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Error running seqArchR in parallel #1

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snikumbh opened this issue Jan 16, 2023 · 0 comments
Open

Error running seqArchR in parallel #1

snikumbh opened this issue Jan 16, 2023 · 0 comments

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@snikumbh
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If you encounter an error similar to the one below, you probably have an older version of BiocParallel. See this issue:Bioconductor/BiocParallel#237

Error in manager$availability[[as.character(result$node)]] <- TRUE : 
  wrong args for environment subassignment
Calls: <Anonymous> ... .bploop_impl -> .collect_result -> .manager_recv -> .manager_recv
In addition: Warning message:
...
Execution halted
Error in serialize(data, node$con, xdr = FALSE) : ignoring SIGPIPE signal
Calls: <Anonymous> ... .send_to -> <Anonymous> -> sendData.SOCK0node -> serialize

As mentioned, updating BiocParallel to 1.32.5 (release version) should make the error go away!

This solution has worked on my side.

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