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schema: '2.0'
stages:
schema:
cmd: python -m boilercv.stages.schema
deps:
- path: src/boilercv/models/paths.py
md5: 1fb691e416d85285b69bdeed1f0199c3
size: 5010
- path: src/boilercv/stages/schema.py
md5: 6eaac97ab24e94f410ccff1517f42d0e
size: 641
outs:
- path: data/schema
md5: 27d4da10420e152d39b1c80f7d5a1403.dir
size: 7966
nfiles: 1
update_binarized_preview:
cmd: python -m boilercv.stages.update_binarized_preview
deps:
- path: data/rois
md5: 1300e5dce1774bdc91feb6365369c7d8.dir
size: 186726548
nfiles: 308
- path: data/sources
md5: a409ab9bcababc1baaea4dc53e312bda.dir
size: 7424602696
nfiles: 308
- path: src/boilercv/stages/update_binarized_preview.py
md5: 186799fb6a90ec27a63cb274e05eca54
size: 1153
outs:
- path: data/previews/binarized.nc
md5: 5598ee8b69f8591e2035194a9054f2c3
size: 147879321
preview_binarized:
cmd: pwsh -Command "./Invoke-Uv.ps1 boilercv-pipeline stage preview-binarized
--scale 1.3 --marker-scale 20.0 --precision 3 --display-rows 12"
deps:
- path: data/rois
hash: md5
md5: e47325f1e13a630c356426538a3b8759.dir
size: 205435895
nfiles: 337
- path: data/sources
hash: md5
md5: 3e979d24a00d1a10bbc6123e12cfe4e4.dir
size: 7444398568
nfiles: 336
- path: packages/pipeline/boilercv_pipeline/stages/preview_binarized
hash: md5
md5: bb9d27c1e81ba17e9ca088079fbd750f.dir
size: 2137
nfiles: 2
params:
params.yaml:
stage:
compare_with_trackpy: --no-compare-with-trackpy
display_rows: 12
frame_count: 0
frame_step: 1
guess_diameter: 21
load_src_from_outs: --no-load-src-from-outs
marker_scale: 20.0
only_sample: --no-only-sample
precision: 3
sample: 2024-07-18T17-44-35
scale: 1.3
outs:
- path: data/previews/binarized_preview.nc
hash: md5
md5: ea5080f6e0420727276d1a713a5591a8
size: 3526688
contours:
cmd: python -m boilercv.stages.contours
deps:
- path: data/sources
md5: a409ab9bcababc1baaea4dc53e312bda.dir
size: 7424602696
nfiles: 308
- path: src/boilercv/stages/contours.py
md5: 2104838a50deea4958e9fb8a4c330110
size: 3041
outs:
- path: data/contours
md5: d43be95333c9df0e76d570f8b11aada2.dir
size: 4279876062
nfiles: 308
fill:
cmd: pwsh -Command "./Invoke-Uv.ps1 boilercv-pipeline stage fill --scale 1.3 --marker-scale
20.0 --precision 3 --display-rows 12"
deps:
- path: data/contours
hash: md5
md5: da949dd69775b9cdeb57c297dbef53c0.dir
size: 4427447588
nfiles: 337
- path: data/rois
hash: md5
md5: e47325f1e13a630c356426538a3b8759.dir
size: 205435895
nfiles: 337
- path: data/sources
hash: md5
md5: 3e979d24a00d1a10bbc6123e12cfe4e4.dir
size: 7444398568
nfiles: 336
- path: packages/pipeline/boilercv_pipeline/stages/fill
hash: md5
md5: b120d0b79bbfe69bacdbd0e2d39a3ad9.dir
size: 2579
nfiles: 2
params:
params.yaml:
stage:
compare_with_trackpy: --no-compare-with-trackpy
display_rows: 12
frame_count: 0
frame_step: 1
guess_diameter: 21
load_src_from_outs: --no-load-src-from-outs
marker_scale: 20.0
only_sample: --no-only-sample
precision: 3
sample: 2024-07-18T17-44-35
scale: 1.3
outs:
- path: data/filled
hash: md5
md5: dd689eddfd2017e88d817ea549e22c2f.dir
size: 3616770112
nfiles: 337
update_filled_preview:
cmd: python -m boilercv.stages.update_filled_preview
deps:
- path: data/filled
md5: 9d9b406833ae3911940fd4d717bb20e1.dir
size: 3482532424
nfiles: 308
- path: src/boilercv/stages/update_filled_preview.py
md5: 2b467aa2304c045ab9acd4a3c429dd39
size: 1273
outs:
- path: data/previews/filled.nc
md5: 913c0dca978f8f3ff088adb765bf8029
size: 147879321
check_cv:
cmd: python -m boilercv.stages.check_cv
deps:
- path: data/samples
md5: 2039f3ac1b4df1e9059cfb4d74b8c1db.dir
size: 22147287
nfiles: 113
- path: src/boilercv/stages/check_cv.py
md5: fb029ebceb5076c48f032c9b2ae3da1e
size: 97
binarized_preview:
cmd: python -m boilercv.stages.update_previews.binarized
deps:
- path: data/rois
md5: 1300e5dce1774bdc91feb6365369c7d8.dir
size: 186726548
nfiles: 308
- path: data/sources
md5: a409ab9bcababc1baaea4dc53e312bda.dir
size: 7424602696
nfiles: 308
- path: src/boilercv/stages/update_previews/binarized.py
md5: 0c528f648e4975729f1642c77e3ae15e
size: 835
outs:
- path: data/previews/binarized.nc
md5: a254f85beabe041bf6c4b0820024465d
size: 3446443
gray_preview:
cmd: python -m boilercv.stages.update_previews.gray
deps:
- path: data/sources
md5: a409ab9bcababc1baaea4dc53e312bda.dir
size: 7424602696
nfiles: 308
- path: src/boilercv/stages/update_previews/gray.py
md5: 089e35a18791e628d5bcd75e7fdca100
size: 768
outs:
- path: data/previews/gray.nc
md5: bca01dd9d72e5a7c25db766c5522652e
size: 18686615
filled_preview:
cmd: python -m boilercv.stages.update_previews.filled
deps:
- path: data/filled
md5: 9d9b406833ae3911940fd4d717bb20e1.dir
size: 3482532424
nfiles: 308
- path: data/sources
md5: a409ab9bcababc1baaea4dc53e312bda.dir
size: 7424602696
nfiles: 308
- path: src/boilercv/stages/update_previews/filled.py
md5: 879e5a5452d1e5ecc5dfaa79789f3840
size: 767
outs:
- path: data/previews/filled.nc
md5: f3596d4b5c08d8701b7630f1136c45aa
size: 1661392
unobstructed:
cmd: python -m boilercv.stages.unobstructed
deps:
- path: data/contours
md5: d43be95333c9df0e76d570f8b11aada2.dir
size: 4279876062
nfiles: 308
- path: src/boilercv/stages/unobstructed.py
md5: 1ac8ebbe39d30d3208f1357f45db0191
size: 72
outs:
- path: data/unobstructed
md5: d751713988987e9331980363e24189ce.dir
size: 0
nfiles: 0
tracks:
cmd: python -m boilercv.stages.tracks
deps:
- path: data/unobstructed
md5: d751713988987e9331980363e24189ce.dir
size: 0
nfiles: 0
- path: src/boilercv/stages/tracks.py
md5: 62e86ce4b840b2f318431b628fd629b9
size: 22
outs:
- path: data/tracks
md5: d751713988987e9331980363e24189ce.dir
size: 0
nfiles: 0
correlations:
cmd: python -m boilercv.stages.correlations
deps:
- path: src/boilercv/stages/correlations.py
md5: 6dc3104f27c37113ff04c12d4fa15a18
size: 62
outs:
- path: data/correlations
md5: d751713988987e9331980363e24189ce.dir
size: 0
nfiles: 0
lifetimes:
cmd: python -m boilercv.stages.lifetimes
deps:
- path: data/correlations
md5: d751713988987e9331980363e24189ce.dir
size: 0
nfiles: 0
- path: data/tracks
md5: d751713988987e9331980363e24189ce.dir
size: 0
nfiles: 0
- path: src/boilercv/stages/lifetimes.py
md5: a0e078277617753ae38f0229ac783a1d
size: 64
outs:
- path: data/lifetimes
md5: d751713988987e9331980363e24189ce.dir
size: 0
nfiles: 0
find_contours:
cmd: pwsh -Command "./Invoke-Uv.ps1 boilercv-pipeline stage find-contours --scale
1.3 --marker-scale 20.0 --precision 3 --display-rows 12"
deps:
- path: data/rois
hash: md5
md5: e47325f1e13a630c356426538a3b8759.dir
size: 205435895
nfiles: 337
- path: data/sources
hash: md5
md5: 3e979d24a00d1a10bbc6123e12cfe4e4.dir
size: 7444398568
nfiles: 336
- path: packages/pipeline/boilercv_pipeline/stages/find_contours
hash: md5
md5: 979ffb48238bf90a827976b6c69f566c.dir
size: 4228
nfiles: 2
params:
params.yaml:
stage:
compare_with_trackpy: --no-compare-with-trackpy
display_rows: 12
frame_count: 0
frame_step: 1
guess_diameter: 21
load_src_from_outs: --no-load-src-from-outs
marker_scale: 20.0
only_sample: --no-only-sample
precision: 3
sample: 2024-07-18T17-44-35
scale: 1.3
outs:
- path: data/contours
hash: md5
md5: da949dd69775b9cdeb57c297dbef53c0.dir
size: 4427447588
nfiles: 337
preview_filled:
cmd: pwsh -Command "./Invoke-Uv.ps1 boilercv-pipeline stage preview-filled --scale
1.3 --marker-scale 20.0 --precision 3 --display-rows 12"
deps:
- path: data/filled
hash: md5
md5: dd689eddfd2017e88d817ea549e22c2f.dir
size: 3616770112
nfiles: 337
- path: data/rois
hash: md5
md5: e47325f1e13a630c356426538a3b8759.dir
size: 205435895
nfiles: 337
- path: packages/pipeline/boilercv_pipeline/stages/preview_filled
hash: md5
md5: d173f961dc88ece9efb8948a76fdbeba.dir
size: 2042
nfiles: 2
params:
params.yaml:
stage:
compare_with_trackpy: --no-compare-with-trackpy
display_rows: 12
frame_count: 0
frame_step: 1
guess_diameter: 21
load_src_from_outs: --no-load-src-from-outs
marker_scale: 20.0
only_sample: --no-only-sample
precision: 3
sample: 2024-07-18T17-44-35
scale: 1.3
outs:
- path: data/previews/filled_preview.nc
hash: md5
md5: e43b9ddb4ad1ad6a3a1603996604e599
size: 1693748
preview_gray:
cmd: pwsh -Command "./Invoke-Uv.ps1 boilercv-pipeline stage preview-gray --scale
1.3 --marker-scale 20.0 --precision 3 --display-rows 12"
deps:
- path: data/large_sources
hash: md5
md5: 658d0528ed596161c3a269f67587f41f.dir
size: 30563612808
nfiles: 17
- path: packages/pipeline/boilercv_pipeline/stages/preview_gray
hash: md5
md5: c70b2b2b46d6359bc6374767eb85d61a.dir
size: 1856
nfiles: 2
params:
params.yaml:
stage:
compare_with_trackpy: --no-compare-with-trackpy
display_rows: 12
frame_count: 0
frame_step: 1
guess_diameter: 21
load_src_from_outs: --no-load-src-from-outs
marker_scale: 20.0
only_sample: --no-only-sample
precision: 3
sample: 2024-07-18T17-44-35
scale: 1.3
outs:
- path: data/previews/gray_preview.nc
hash: md5
md5: 55ca0f81794bd1344fd688bcb78a4091
size: 186409
find_unobstructed:
cmd: python pipeline/boilercv_pipeline/stages/find_unobstructed.py
deps:
- path: data/contours
hash: md5
md5: 580c3168f9cf0ab979bb776cc14341ac.dir
size: 4429746285
nfiles: 338
- path: pipeline/boilercv_pipeline/stages/find_unobstructed.py
hash: md5
md5: 610f35980e37e6c97dd7bb78829ea518
size: 259
outs:
- path: data/unobstructed
hash: md5
md5: d86b284d61c0341668c7594a76e10ec3.dir
size: 0
nfiles: 1
find_tracks:
cmd: pwsh -Command "./Invoke-Uv.ps1 boilercv-pipeline stage find-tracks --scale
1.3 --marker-scale 20.0 --precision 3 --display-rows 12 --sample 2024-07-18T17-44-35
--no-only-sample --frame-count 0 --frame-step 1"
deps:
- path: data/e230920/objects
hash: md5
md5: ea2ffb3850ce5d33bc2d7ae2887ee4e7.dir
size: 92859509
nfiles: 16
- path: data/e230920/thermal.h5
hash: md5
md5: 9996d840f1902fa3d3fffad11bdb1225
size: 402404
- path: data/filled
hash: md5
md5: dd689eddfd2017e88d817ea549e22c2f.dir
size: 3616770112
nfiles: 337
- path: docs/notebooks/find_tracks.ipynb
hash: md5
md5: b358895a5f50e13c4cb99e442aba6d95
size: 32023
- path: packages/pipeline/boilercv_pipeline/stages/find_tracks
hash: md5
md5: a9e78f1299ce20dba7779fba0b4bd81f.dir
size: 10373
nfiles: 2
params:
params.yaml:
stage:
compare_with_trackpy: --no-compare-with-trackpy
display_rows: 12
frame_count: 0
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marker_scale: 20.0
only_sample: --no-only-sample
precision: 3
sample: 2024-07-18T17-44-35
scale: 1.3
outs:
- path: data/headers
hash: md5
md5: f1de24e095c017140acb57f141cb45ce.dir
size: 1265736
nfiles: 336
- path: data/large_sources
hash: md5
md5: 658d0528ed596161c3a269f67587f41f.dir
size: 30563612808
nfiles: 17
flatten_data_dir:
cmd: boilercv_pipeline stages flatten-data-dir
deps:
- path: data/hierarchical_data
hash: md5
md5: 6ffbaaad7b4ac6e1afabed19a80b2560.dir
size: 0
nfiles: 1
e230920_update_thermal_data:
cmd: boilercv-pipeline stage e230920-update-thermal-data
deps:
- path: data/e230920/thermal_raw.csv
hash: md5
md5: d41d8cd98f00b204e9800998ecf8427e
size: 0
- path: docs/notebooks/e230920_get_thermal_data.ipynb
hash: md5
md5: 7d031f1ec18637fdedbe55103bac75dd
size: 3996
- path: pipeline/boilercv_pipeline/stages/e230920_get_thermal_data
hash: md5
md5: 9b61c0cbab32b545d62fbe3e15a8c069.dir
size: 1515
nfiles: 2
outs:
- path: data/e230920/thermal.h5
hash: md5
md5: d41d8cd98f00b204e9800998ecf8427e
size: 0
e230920_find_contours:
cmd: boilercv-pipeline stage e230920-find-contours
deps:
- path: data/contours
hash: md5
md5: 580c3168f9cf0ab979bb776cc14341ac.dir
size: 4429746285
nfiles: 338