From 7602b3fe99c169388b98139dde506e1b3cb2ebce Mon Sep 17 00:00:00 2001
From: Surya Saha <ss2489@cornell.edu>
Date: Thu, 7 Mar 2019 15:31:47 -0500
Subject: [PATCH] added apollo and jbrowse links #68

---
 mason/genomes/Citrus_sinensis.mas | 14 +++++++++-----
 1 file changed, 9 insertions(+), 5 deletions(-)

diff --git a/mason/genomes/Citrus_sinensis.mas b/mason/genomes/Citrus_sinensis.mas
index 916d859..bed9fd3 100644
--- a/mason/genomes/Citrus_sinensis.mas
+++ b/mason/genomes/Citrus_sinensis.mas
@@ -38,11 +38,13 @@ The genome assembly, pseudomolecules, annotations and genome browser are availab
     __border   => 0,
     __multicol => 2,
     'Bulk Datasets (via CAP)' =>
-    '<a href="http://citrus.hzau.edu.cn/orange/download/index.php">Genome sequence and Annotation</a>',
+    '<a href="http://citrus.hzau.edu.cn/orange/download/index.php" target="_blank">Genome sequence and Annotation</a>',
     BLAST => '<a href="/tools/blast/?db_id=5">TODO Genome, CDS and Proteins</a>',
-    'Genome browser' => '<a href="/jbrowse_citrusgreening/current/?data=data/json/Citrus_sinensis&tracks=DNA%2CGene%20models%20v1.1&highlight=">TODO Jbrowse</a>',
+    'Genome browser' => '<a href="/jbrowse_citrusgreening/current/?data=data/json/Citrus_sinensis-v2&tracks=DNA%2CGene%20models%20v2&highlight=" target="_blank"> Jbrowse</a>',
     'Pathways' =>
-    '<a href="http://ptools.citrusgenomedb.org/organism-summary?object=CSINENSIS">Metabolic pathway database</a>'
+    '<a href="http://ptools.citrusgenomedb.org/organism-summary?object=CSINENSIS" target="_blank">Metabolic pathway database</a>',
+    'Gene curation' =>
+    '<a href="http://apollo.sgn.cornell.edu/apollo/1121939/jbrowse/index.html?loc=chrUn:0..175209&tracks=" target="_blank">Apollo annotation editor</a>'
     )
     %>
 </&>
@@ -69,11 +71,13 @@ The genome assembly, pseudomolecules, annotations and genome browser are availab
     __border   => 0,
     __multicol => 2,
     'Bulk Datasets (via Phytozome)' =>
-    '<a href="http://phytozome.jgi.doe.gov/pz/portal.html#!bulk?org=Org_Csinensis">Genome sequence and Annotation</a>',
+    '<a href="http://phytozome.jgi.doe.gov/pz/portal.html#!bulk?org=Org_Csinensis" target="_blank">Genome sequence and Annotation</a>',
     BLAST => '<a href="/tools/blast/?db_id=5">Genome, CDS and Proteins</a>',
     'Genome browser' => '<a href="/jbrowse_citrusgreening/current/?data=data/json/Citrus_sinensis&tracks=DNA%2CGene%20models%20v1.1&highlight=">Jbrowse</a>',
     'Pathways' =>
-    '<a href="http://ptools.citrusgenomedb.org/organism-summary?object=CSINENSIS_ML">Metabolic pathway database</a>'
+    '<a href="http://ptools.citrusgenomedb.org/organism-summary?object=CSINENSIS_ML" target="_blank">Metabolic pathway database</a>',
+    'Gene curation' =>
+    '<a href="http://apollo.sgn.cornell.edu/apollo/1121939/jbrowse/index.html?loc=chrUn:0..175209&tracks=" target="_blank">Apollo annotation editor</a>'
     )
     %>
 </&>