generated from specklesystems/speckle_automate_python_example
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Dockerfile
251 lines (226 loc) · 8.32 KB
/
Dockerfile
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
FROM debian:bullseye-slim
# Install basic packages
RUN set -eux; \
apt-get update; \
apt-get install -y --no-install-recommends \
ca-certificates \
curl \
gnupg \
netbase \
wget; \
rm -rf /var/lib/apt/lists/*
# Install version control systems and procps
RUN apt-get update && apt-get install -y --no-install-recommends \
git \
mercurial \
openssh-client \
subversion \
procps; \
rm -rf /var/lib/apt/lists/*
# Install various development tools and libraries
RUN set -ex; \
apt-get update; \
apt-get install -y --no-install-recommends \
autoconf \
automake \
bzip2 \
dpkg-dev \
file \
g++ \
gcc \
imagemagick \
libbz2-dev \
libc6-dev \
libcurl4-openssl-dev \
libdb-dev \
libevent-dev \
libffi-dev \
libgdbm-dev \
libglib2.0-dev \
libgmp-dev \
libjpeg-dev \
libkrb5-dev \
liblzma-dev \
libmagickcore-dev \
libmagickwand-dev \
libmaxminddb-dev \
libncurses5-dev \
libncursesw5-dev \
libpng-dev \
libpq-dev \
libreadline-dev \
libsqlite3-dev \
libssl-dev \
libtool \
libwebp-dev \
libxml2-dev \
libxslt-dev \
libyaml-dev \
make \
patch \
unzip \
xz-utils \
zlib1g-dev \
$(if apt-cache show 'default-libmysqlclient-dev' 2>/dev/null | grep -q '^Version:'; then \
echo 'default-libmysqlclient-dev'; \
else \
echo 'libmysqlclient-dev'; \
fi); \
rm -rf /var/lib/apt/lists/*
# Set environment variables
ENV PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
ENV LANG=C.UTF-8
# Install additional libraries
RUN /bin/sh -c set -eux; \
apt-get update; \
apt-get install -y --no-install-recommends \
libbluetooth-dev \
tk-dev \
uuid-dev; \
rm -rf /var/lib/apt/lists/*
# Set GPG key and Python version
ENV GPG_KEY=A035C8C19219BA821ECEA86B64E628F8D684696D
ENV PYTHON_VERSION=3.10.13
# Install Python from source
RUN /bin/sh -c set -eux; \
wget -O python.tar.xz "https://www.python.org/ftp/python/${PYTHON_VERSION%%[a-z]*}/Python-$PYTHON_VERSION.tar.xz"; \
wget -O python.tar.xz.asc "https://www.python.org/ftp/python/${PYTHON_VERSION%%[a-z]*}/Python-$PYTHON_VERSION.tar.xz.asc"; \
GNUPGHOME="$(mktemp -d)"; export GNUPGHOME; \
gpg --batch --keyserver hkps://keys.openpgp.org --recv-keys "$GPG_KEY"; \
gpg --batch --verify python.tar.xz.asc python.tar.xz; \
gpgconf --kill all; \
rm -rf "$GNUPGHOME" python.tar.xz.asc; \
mkdir -p /usr/src/python; \
tar --extract --directory /usr/src/python --strip-components=1 --file python.tar.xz; \
rm python.tar.xz; \
cd /usr/src/python; \
gnuArch="$(dpkg-architecture --query DEB_BUILD_GNU_TYPE)"; \
./configure \
--build="$gnuArch" \
--enable-loadable-sqlite-extensions \
--enable-optimizations \
--enable-option-checking=fatal \
--enable-shared \
--with-lto \
--with-system-expat \
--without-ensurepip; \
nproc="$(nproc)"; \
EXTRA_CFLAGS="$(dpkg-buildflags --get CFLAGS)"; \
LDFLAGS="$(dpkg-buildflags --get LDFLAGS)"; \
make -j "$nproc" \
"EXTRA_CFLAGS=${EXTRA_CFLAGS:-}" \
"LDFLAGS=${LDFLAGS:-}" \
"PROFILE_TASK=${PROFILE_TASK:-}"; \
rm python; \
make -j "$nproc" \
"EXTRA_CFLAGS=${EXTRA_CFLAGS:-}" \
"LDFLAGS=${LDFLAGS:--Wl},-rpath='\$\$ORIGIN/../lib'" \
"PROFILE_TASK=${PROFILE_TASK:-}" \
python; \
make install; \
bin="$(readlink -ve /usr/local/bin/python3)"; \
dir="$(dirname "$bin")"; \
mkdir -p "/usr/share/gdb/auto-load/$dir"; \
cp -vL Tools/gdb/libpython.py "/usr/share/gdb/auto-load/$bin-gdb.py"; \
cd /; \
rm -rf /usr/src/python; \
find /usr/local -depth \
\( \
\( -type d -a \( -name test -o -name tests -o -name idle_test \) \) \
-o \( -type f -a \( -name '*.pyc' -o -name '*.pyo' -o -name 'libpython*.a' \) \) \
\) -exec rm -rf '{}' +; \
ldconfig; \
python3 --version
# Create symlinks for Python tools
RUN /bin/sh -c set -eux; \
for src in idle3 pydoc3 python3 python3-config; do \
dst="$(echo "$src" | tr -d 3)"; \
[ -s "/usr/local/bin/$src" ]; \
[ ! -e "/usr/local/bin/$dst" ]; \
ln -svT "$src" "/usr/local/bin/$dst"; \
done
# Set Python pip and setuptools versions and install pip
ENV PYTHON_PIP_VERSION=23.0.1
ENV PYTHON_SETUPTOOLS_VERSION=65.5.1
ENV PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/c6add47b0abf67511cdfb4734771cbab403af062/public/get-pip.py
ENV PYTHON_GET_PIP_SHA256=22b849a10f86f5ddf7ce148ca2a31214504ee6c83ef626840fde6e5dcd809d11
RUN /bin/sh -c set -eux; \
wget -O get-pip.py "$PYTHON_GET_PIP_URL"; \
echo "$PYTHON_GET_PIP_SHA256 *get-pip.py" | sha256sum -c -; \
export PYTHONDONTWRITEBYTECODE=1; \
python get-pip.py \
--disable-pip-version-check \
--no-cache-dir \
--no-compile \
"pip==$PYTHON_PIP_VERSION" \
"setuptools==$PYTHON_SETUPTOOLS_VERSION"; \
rm -f get-pip.py; \
pip --version
# Set working directory
WORKDIR /root/
# Set build arguments
ARG BRANCH=main
ARG NUM_CORES=10
# Clone a git repository
RUN /bin/sh -c "git clone --single-branch --depth 1 -b $BRANCH https://github.com/nuvolos-cloud/PyMesh.git"
# Set environment variables
ENV PYMESH_PATH=/root/PyMesh
ENV NUM_CORES=10
# Install additional packages
RUN echo "deb http://ftp.us.debian.org/debian unstable main contrib non-free" >> /etc/apt/sources.list.d/unstable.list && \
apt-get update && apt-get install -y \
gcc-9 \
g++-9 \
git \
cmake \
libgmp-dev \
libmpfr-dev \
libgmpxx4ldbl \
libboost-dev \
libboost-thread-dev \
zip unzip patchelf && \
apt-get clean
# Build and install PyMesh
WORKDIR /root/PyMesh
RUN git clone --depth 1 https://github.com/PyMesh/cgal.git $PYMESH_PATH/third_party/cgal
RUN git clone --depth 1 https://github.com/PyMesh/libigl.git $PYMESH_PATH/third_party/libigl
RUN git clone --depth 1 https://github.com/PyMesh/carve.git $PYMESH_PATH/third_party/carve
RUN git clone --depth 1 https://github.com/PyMesh/cork.git $PYMESH_PATH/third_party/cork
RUN git clone --depth 1 https://github.com/PyMesh/tetgen.git $PYMESH_PATH/third_party/tetgen
RUN git clone --depth 1 https://github.com/PyMesh/qhull.git $PYMESH_PATH/third_party/qhull
RUN git clone --depth 1 https://github.com/PyMesh/Clipper.git $PYMESH_PATH/third_party/Clipper
RUN git clone --depth 1 https://github.com/PyMesh/eigen.git $PYMESH_PATH/third_party/eigen
RUN git clone --depth 1 https://github.com/PyMesh/pybind11.git $PYMESH_PATH/third_party/pybind11
RUN git clone --depth 1 https://github.com/PyMesh/geogram.git $PYMESH_PATH/third_party/geogram
RUN git clone --depth 1 https://github.com/PyMesh/draco.git $PYMESH_PATH/third_party/draco
RUN git clone --depth 1 https://github.com/PyMesh/TetWild.git $PYMESH_PATH/third_party/TetWild
RUN git clone --depth 1 https://github.com/PyMesh/WindingNumber.git $PYMESH_PATH/third_party/WindingNumber
RUN git clone --depth 1 https://github.com/PyMesh/tbb.git $PYMESH_PATH/third_party/tbb
RUN git clone --depth 1 https://github.com/PyMesh/jigsaw.git $PYMESH_PATH/third_party/jigsaw
RUN git clone --depth 1 https://github.com/fmtlib/fmt.git $PYMESH_PATH/third_party/fmt
RUN git clone --depth 1 https://github.com/gabime/spdlog.git $PYMESH_PATH/third_party/spdlog
RUN git submodule update --init third_party/triangle
RUN git submodule update --init third_party/quartet
RUN git submodule update --init third_party/mmg
RUN git submodule update --init third_party/json
RUN pip install -r $PYMESH_PATH/python/requirements.txt
RUN ./setup.py bdist_wheel
RUN rm -rf build_3.7 third_party/build
RUN python $PYMESH_PATH/docker/patches/patch_wheel.py dist/pymesh2*.whl
RUN pip install --upgrade pip
RUN pip install dist/pymesh2*.whl
# Build third-party libraries for PyMesh
WORKDIR /root/PyMesh/third_party
RUN /bin/sh -c "python ./build.py mmg && python ./build.py tetgen"
# We install poetry to generate a list of dependencies which will be required by our application
RUN pip install poetry
# We set the working directory to be the /home/speckle directory; all of our files will be copied here.
WORKDIR /home/speckle
# Copy all of our code and assets from the local directory into the /home/speckle directory of the container.
# We also ensure that the user 'speckle' owns these files, so it can access them
# This assumes that the Dockerfile is in the same directory as the rest of the code
COPY . /home/speckle
# Using poetry, we generate a list of requirements, save them to requirements.txt, and then use pip to install them
RUN poetry export --format requirements.txt --output /home/speckle/requirements.txt --without-hashes && \
pip install --requirement /home/speckle/requirements.txt
RUN poetry install --no-root