Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Manual retrieve of the labels-disc because of git-annex issues #34

Closed
jcohenadad opened this issue Aug 30, 2020 · 1 comment
Closed

Comments

@jcohenadad
Copy link
Member

jcohenadad commented Aug 30, 2020

Because of the git-annex issue #24 and the fact that we cannot wait anymore for the issue to be fixed (we have hard deadlines to analyze data), I had no choice but manually copy the labels produced by @lrouhier directly from our internal server. Below are the command lines I used to bundle these manual labels:

  1. zip label files by keeping the directory structure:
# connect as root to rosenberg
cd /home/GRAMES.POLYMTL.CA/luroub/spineclean/error_redo/data-multi-subject
find . -name "*labels-disc-manual*.*" | while read F; do zip labels-disc.zip $F; done
  1. copy them onto compute canada cluster, under the data-multi-subject root directory
  2. unzip: unzip labels-disc.zip and press "A" for replace all.

For the record, here are the labels: labels-disc.zip

@jcohenadad
Copy link
Member Author

issue is now fixed (thanks @kousu !) more context in #24

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant