bifrost_sp_cdiff_workflow.yml

name: bifrost sp cdiff workflow

on:
  push:
    branches: ["main"]
  pull_request:
    branches: ["main"]
  repository_dispatch:  # webhook event to trigger this action workflow upon push to the submodule cdiff_fbi 
    types: 
      - cdiff-fbi-webhook 

jobs:
  build:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: ["ubuntu-latest"]
        python-version: ["3.11"]
  
    steps:
      # Step 1: Checkout repository
      - name: Checkout repository
        uses: actions/checkout@v3
        with:
          submodules: 'true'  #Initialize and update submodules -> git submodule init && git submodule update
        
      # Step 2: Update submodule to the latest commit
      - name: Update submodule
        run: |
          cd bifrost_sp_cdiff/cdiff_fbi
          git fetch origin
          git checkout main  # or the specific branch you want to track
          git pull origin main  # pull the latest changes
          
          # print the latest commit of cdiff_fbi
          LATEST_COMMIT=$(git rev-parse HEAD)
          echo "Updated cdiff_fbi to latest commit: $LATEST_COMMIT"

      # Step 3: Set environment variables
      - name: Set environment variables
        run: |
          echo "BIFROST_INSTALL_DIR='${{ github.workspace }}'" >> $GITHUB_ENV

      # Step 4: Extract version from __init__.py and set ENV_NAME
      - name: Set ENV_NAME
        run: |
          VERSION=$(grep "__version__" bifrost_sp_cdiff/__init__.py | cut -d "'" -f 2)
          REPO_NAME=$(basename "${{ github.workspace }}")
          ENV_NAME="${REPO_NAME}_v${VERSION}"
          # Echo the ENV_NAME to the log for debugging
          echo "Setting ENV_NAME to: $ENV_NAME"
          echo "ENV_NAME=$ENV_NAME" >> $GITHUB_ENV

      # Step 5: Build Docker image
      - name: Build Docker image
        run: |
          docker build --build-arg BIFROST_DB_KEY="${{ secrets.MONGODB_ATLAS_TEST }}" --build-arg CONDA_ENV_NAME="${{ env.ENV_NAME }}" -t bifrost_sp_cdiff_image .

      # Step 6: Run Docker container and execute the command
      - name: Run Docker container
        run: |
          docker run --env BIFROST_DB_KEY="${{ secrets.MONGODB_ATLAS_TEST  }}" --env CONDA_ENV_NAME="${{ env.ENV_NAME }}" bifrost_sp_cdiff_image