diff --git a/new_project_from_mongo.py b/new_project_from_mongo.py index 98ef82a..597dae2 100644 --- a/new_project_from_mongo.py +++ b/new_project_from_mongo.py @@ -11,8 +11,8 @@ from functions import new_project help_desc = ("Create a new project in Microreact using one or more trees defined in MongoDB. " - "The script assumes a local MongoDB instance is running on default port and with no authentication requirements. " - "The MongoDB instance must contain a database named 'bio_api_test' containing a collection named 'tree_calculations.' " + "The script depends on a MongoDB database defined by BIO_API_MONGO_CONNECTION, or in the case this environment " + "variable is not set, a MongoDB database on mongodb://mongodb:27017/bio_api_test. " "A minimal data table will be generated automatically.") parser = argparse.ArgumentParser(description=help_desc) parser.add_argument(