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Copy pathPrimers-Actin.fasta
299 lines (299 loc) · 17.4 KB
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Primers-Actin.fasta
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>OENM01000373.1 Rotaria magnacalcarata genome assembly, contig: RMAG00373, whole genome shotgun sequence
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------------------------------------ATAGAATTCAAAGAAATCATTTAT
TTTCTTATTTCGTTTTCAGCAATGTATGTTGCTATTCAAGCTGTACTTTCATTGTATGCA
AGTGGTCGAACAACTGGTATTGTACTTGATTCAGGTGATGGTGTTACACATACAGTACCA
ATCTATGAAGGTTATGCATTACCACATGCTATACTCCGTCTTGACTTAGCTGGACGAGAT
TTAACTGATTATTTGATGAAAATCTTGACTGAACGTGGTTATTCATTTGTAACAACAGCC
GAACGTGAAATCGTTCGTGATATTAAAGAAAAATTATGTTATGTTGCATTAGATTTCGAA
CAAGAAATGGCTACCGCTGCATCATCTTCATCATTGGAAAAAAGTTATGAATTACCTGAT
GGACAAGTTATTACTATTGGCAATGAACGTTTTCGTTGTCCTGAAGCTTTATTTCAACCA
AGCTTTCTCGGAATGGAAACAGCTGGTAAGAGAC----------ACATTTCTTCATCGAG
AAGCTAAAAAATCAAATAATAATTCTGTATTTATGTTT---TAGGTATTCATGAAACAAC
ATATAATTCAATTATGAAATGCGACATCGATATTCGTAAAGATTTATATGCTAATACAGT
TCTTTCTGGTGGTTCAACAATGTATCCAGGCATTGCTGATCGTATGCAAAAAGAAATAAC
ATCATTGGCACCATCGACAATGAAGATTAAGATCATCGCACCACCTGAACGTAAATACTC
GGTATGGATTGGTGGCTCAATCTTAGCTTCGTTATCAACCTTTCAACAAATGTGGATTTC
AAAACAAGAATACGATGAATCAGGTCCATCAATTGTTCATCGAAAATGTTTTTAAAAATT
TT
>CAWI020040887.1 Adineta vaga WGS project CAWI000000000 data, contig 771, whole genome shotgun sequence
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------------------------------------AATCATTCTATTCTATTCTATTCT
ATTCTTTCTCTCTTTTCAGCTATGTATGTTGCTATTCAAGCTGTACTTTCACTTTATGCT
AGTGGTCGTACAACTGGTATTGTACTTGATTCAGGTGATGGTGTCACACACACAGTTCCC
ATCTATGAAGGATATGCATTACCACATGCTATTCTTCGTCTTGATTTAGCTGGTCGTGAT
TTGACTGATTATTTGATGAAAATCTTGACCGAACGTGGTTATTCATTTGTGACAACAGCT
GAACGTGAAATCGTTCGTGATATCAAAGAAAAACTTTGCTATGTCGCACTTGATTTCGAA
CAAGAAATGGCTACAGCTGCATCATCATCATCATTGGAAAAGAGCTATGAATTACCCGAT
GGTCAAGTCATTACCATTGGTAATGAACGATTCCGTTGTCCTGAAGCTGTATTTCAACCA
AGCTTCCTCGGAATGGAAACAGCTGGTGAGTAGA--------TAAAATGACATAGTTAAG
TTGATGATGAACTAATTCTATCTATTGTAT------TG---TAGGTATTCATGAAACAAC
ATACAATTCAATCATGAAATGCGATATTGATATTCGTAAAGATTTGTATGCAAATACAGT
TTTATCAGGTGGTACAACGATGTATCCAGGTATTGCTGATCGTATGCAAAAAGAAATAAC
ATCATTGGCACCATCAACAATGAAAATCAAAATCATTGCTCCACCTGAACGTAAATATTC
AGTCTGGATTGGTGGTTCAATTTTGGCTTCATTATCAACCTTTCAACAAATGTGGATTTC
GAAACAAGAATATGATGAATCGGGTCCATCAATTGTTCACCGAAAATGCTTTTAAACAAA
TG
>CAWI020041581.1 Adineta vaga WGS project CAWI000000000 data, contig 77, whole genome shotgun sequence
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------------------------------TGTGTGTATGACTTCATTTACATCTCATCT
TTGTTTCTT------CTAGCCATGTATGTCGCTATTCAAGCAGTTCTTTCTCTCTATGCA
AGTGGTCGAACAACTGGTATTGTTCTTGATTCAGGTGATGGTGTCACACATACTGTACCC
ATCTATGAAGGTTATGCATTACCACATGCTATTCTTCGTCTTGATTTGGCTGGTCGAGAT
TTGACTGATTATTTGATGAAAATCTTGACTGAACGTGGTTATTCATTTGTCACAACAGCT
GAACGTGAAATTGTTCGAGATATCAAAGAAAAACTTTGTTATGTTGCATTAGATTTCGAA
CAAGAAATGGCCACAGCTGCTTCATCATCATCATTAGAAAAGAGTTATGAACTTCCTGAT
GGTCAAGTCATTACTATTGGTAATGAACGATTTCGATGTCCAGAAGCATTGTTTCAACCA
AGTTTTCTTGGAATGGAAACTGCTGGTAAGTTTTGTTGA--TGAAGATGGTTTTGT----
-------TGAAATAGAAAGTGATAATGTTCTGTTTTTG---TAGGTATTCATGAAACAAC
ATATAATTCGATCATGAAATGTGATATCGATATTCGTAAAGATTTATATGCAAACACAGT
GTTATCTGGTGGTACAACCATGTATCCAGGTATTGCTGATCGTATGCAAAAAGAAATCAC
TTCATTAGCACCATCAACAATGAAGATCAAAATCATTGCACCACCTGAACGTAAATATTC
AGTATGGATTGGTGGATCAATTTTGGCGTCATTATCAACATTTCAACAGATGTGGATCTC
GAAACAAGAATATGATGAATCAGGTCCATCAATTGTTCATCGAAAATGTTTTTAAAGAAA
TA
>OEOC01000002.1 Adineta vaga isolate MBL genome assembly, contig: AVAG00002, whole genome shotgun sequence
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------------------------------TGTGTGTATGACTTCATTTACATCTCATCT
TTGTTTCTT------CTAGCCATGTATGTCGCTATTCAAGCAGTTCTTTCTCTCTATGCA
AGTGGTCGAACAACTGGTATTGTTCTTGATTCAGGTGATGGTGTCACACATACTGTACCC
ATCTATGAAGGTTATGCATTACCACATGCTATTCTTCGTCTTGATTTGGCTGGTCGAGAT
TTGACTGATTATTTGATGAAAATCTTGACTGAACGTGGTTATTCATTTGTCACAACAGCT
GAACGTGAAATTGTTCGAGATATCAAAGAAAAACTTTGTTATGTTGCATTAGATTTCGAA
CAAGAAATGGCCACAGCTGCTTCATCATCATCATTAGAAAAGAGTTATGAACTTCCTGAT
GGTCAAGTCATTACTATTGGTAATGAACGATTTCGATGTCCAGAAGCATTGTTTCAACCA
AGTTTTCTTGGAATGGAAACTGCTGGTAAGTTTTGTTGA--TGAAAATGGTTTTGT----
-------TGAAATAGAAAGTGATAATGTTCTGTTTTTG---TAGGTATTCATGAAACAAC
ATATAATTCGATCATGAAATGTGATATCGATATTCGTAAAGATTTATATGCAAACACAGT
GTTATCTGGTGGTACAACCATGTATCCAGGTATTGCTGATCGTATGCAAAAAGAAATCAC
TTCATTAGCACCATCAACAATGAAGATCAAAATCATTGCACCACCTGAACGTAAATATTC
AGTATGGATTGGTGGATCAATTTTGGCGTCATTATCAACATTTCAACAGATGTGGATCTC
GAAACAAGAATATGATGAATCAGGTCCATCAATTGTTCATCGAAAATGTTTTTAAAGAAA
TA
>OENM01000373.1 Rotaria magnacalcarata genome assembly, contig: RMAG00373, whole genome shotgun sequence
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------------------------------------ATAGAATTCAAAGAAATCATTTAT
TTTCTTATTTCGTTTTCAGCAATGTATGTTGCTATTCAAGCTGTACTTTCATTGTATGCA
AGTGGTCGAACAACTGGTATTGTACTTGATTCAGGTGATGGTGTTACACATACAGTACCA
ATCTATGAAGGTTATGCATTACCACATGCTATACTCCGTCTTGACTTAGCTGGACGAGAT
TTAACTGATTATTTGATGAAAATCTTGACTGAACGTGGTTATTCATTTGTAACAACAGCC
GAACGTGAAATCGTTCGTGATATTAAAGAAAAATTATGTTATGTTGCATTAGATTTCGAA
CAAGAAATGGCTACCGCTGCATCATCTTCATCATTGGAAAAAAGTTATGAATTACCTGAT
GGACAAGTTATTACTATTGGCAATGAACGTTTTCGTTGTCCTGAAGCTTTATTTCAACCA
AGCTTTCTCGGAATGGAAACAGCTGGTAAGAGAC----------ACATTTCTTCATCGAG
AAGCTAAAAAATCAAATAATAATTCTGTATTTATGTTT---TAGGTATTCATGAAACAAC
ATATAATTCAATTATGAAATGCGACATCGATATTCGTAAAGATTTATATGCTAATACAGT
TCTTTCTGGTGGTTCAACAATGTATCCAGGCATTGCTGATCGTATGCAAAAAGAAATAAC
ATCATTGGCACCATCGACAATGAAGATTAAGATCATCGCACCACCTGAACGTAAATACTC
GGTATGGATTGGTGGCTCAATCTTAGCTTCGTTATCAACCTTTCAACAAATGTGGATTTC
AAAACAAGAATACGATGAATCAGGTCCATCAATTGTTCATCGAAAATGTTTTTAAAAATT
TT
>CAWI020040887.1 Adineta vaga WGS project CAWI000000000 data, contig 771, whole genome shotgun sequence
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------------------------------------AATCATTCTATTCTATTCTATTCT
ATTCTTTCTCTCTTTTCAGCTATGTATGTTGCTATTCAAGCTGTACTTTCACTTTATGCT
AGTGGTCGTACAACTGGTATTGTACTTGATTCAGGTGATGGTGTCACACACACAGTTCCC
ATCTATGAAGGATATGCATTACCACATGCTATTCTTCGTCTTGATTTAGCTGGTCGTGAT
TTGACTGATTATTTGATGAAAATCTTGACCGAACGTGGTTATTCATTTGTGACAACAGCT
GAACGTGAAATCGTTCGTGATATCAAAGAAAAACTTTGCTATGTCGCACTTGATTTCGAA
CAAGAAATGGCTACAGCTGCATCATCATCATCATTGGAAAAGAGCTATGAATTACCCGAT
GGTCAAGTCATTACCATTGGTAATGAACGATTCCGTTGTCCTGAAGCTGTATTTCAACCA
AGCTTCCTCGGAATGGAAACAGCTGGTGAGTAGA--------TAAAATGACATAGTTAAG
TTGATGATGAACTAATTCTATCTATTGTAT------TG---TAGGTATTCATGAAACAAC
ATACAATTCAATCATGAAATGCGATATTGATATTCGTAAAGATTTGTATGCAAATACAGT
TTTATCAGGTGGTACAACGATGTATCCAGGTATTGCTGATCGTATGCAAAAAGAAATAAC
ATCATTGGCACCATCAACAATGAAAATCAAAATCATTGCTCCACCTGAACGTAAATATTC
AGTCTGGATTGGTGGTTCAATTTTGGCTTCATTATCAACCTTTCAACAAATGTGGATTTC
GAAACAAGAATATGATGAATCGGGTCCATCAATTGTTCACCGAAAATGCTTTTAAACAAA
TG
>CAWI020041581.1 Adineta vaga WGS project CAWI000000000 data, contig 77, whole genome shotgun sequence
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------------------------------TGTGTGTATGACTTCATTTACATCTCATCT
TTGTTTCTT------CTAGCCATGTATGTCGCTATTCAAGCAGTTCTTTCTCTCTATGCA
AGTGGTCGAACAACTGGTATTGTTCTTGATTCAGGTGATGGTGTCACACATACTGTACCC
ATCTATGAAGGTTATGCATTACCACATGCTATTCTTCGTCTTGATTTGGCTGGTCGAGAT
TTGACTGATTATTTGATGAAAATCTTGACTGAACGTGGTTATTCATTTGTCACAACAGCT
GAACGTGAAATTGTTCGAGATATCAAAGAAAAACTTTGTTATGTTGCATTAGATTTCGAA
CAAGAAATGGCCACAGCTGCTTCATCATCATCATTAGAAAAGAGTTATGAACTTCCTGAT
GGTCAAGTCATTACTATTGGTAATGAACGATTTCGATGTCCAGAAGCATTGTTTCAACCA
AGTTTTCTTGGAATGGAAACTGCTGGTAAGTTTTGTTGA--TGAAGATGGTTTTGT----
-------TGAAATAGAAAGTGATAATGTTCTGTTTTTG---TAGGTATTCATGAAACAAC
ATATAATTCGATCATGAAATGTGATATCGATATTCGTAAAGATTTATATGCAAACACAGT
GTTATCTGGTGGTACAACCATGTATCCAGGTATTGCTGATCGTATGCAAAAAGAAATCAC
TTCATTAGCACCATCAACAATGAAGATCAAAATCATTGCACCACCTGAACGTAAATATTC
AGTATGGATTGGTGGATCAATTTTGGCGTCATTATCAACATTTCAACAGATGTGGATCTC
GAAACAAGAATATGATGAATCAGGTCCATCAATTGTTCATCGAAAATGTTTTTAAAGAAA
TA
>OEOC01000002.1 Adineta vaga isolate MBL genome assembly, contig: AVAG00002, whole genome shotgun sequence
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------------------------------TGTGTGTATGACTTCATTTACATCTCATCT
TTGTTTCTT------CTAGCCATGTATGTCGCTATTCAAGCAGTTCTTTCTCTCTATGCA
AGTGGTCGAACAACTGGTATTGTTCTTGATTCAGGTGATGGTGTCACACATACTGTACCC
ATCTATGAAGGTTATGCATTACCACATGCTATTCTTCGTCTTGATTTGGCTGGTCGAGAT
TTGACTGATTATTTGATGAAAATCTTGACTGAACGTGGTTATTCATTTGTCACAACAGCT
GAACGTGAAATTGTTCGAGATATCAAAGAAAAACTTTGTTATGTTGCATTAGATTTCGAA
CAAGAAATGGCCACAGCTGCTTCATCATCATCATTAGAAAAGAGTTATGAACTTCCTGAT
GGTCAAGTCATTACTATTGGTAATGAACGATTTCGATGTCCAGAAGCATTGTTTCAACCA
AGTTTTCTTGGAATGGAAACTGCTGGTAAGTTTTGTTGA--TGAAAATGGTTTTGT----
-------TGAAATAGAAAGTGATAATGTTCTGTTTTTG---TAGGTATTCATGAAACAAC
ATATAATTCGATCATGAAATGTGATATCGATATTCGTAAAGATTTATATGCAAACACAGT
GTTATCTGGTGGTACAACCATGTATCCAGGTATTGCTGATCGTATGCAAAAAGAAATCAC
TTCATTAGCACCATCAACAATGAAGATCAAAATCATTGCACCACCTGAACGTAAATATTC
AGTATGGATTGGTGGATCAATTTTGGCGTCATTATCAACATTTCAACAGATGTGGATCTC
GAAACAAGAATATGATGAATCAGGTCCATCAATTGTTCATCGAAAATGTTTTTAAAGAAA
TA
>AL3_15_METAGENOME
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----------------GTATTGTACTTGATTCAGGTGATGGTGTAACACATACAGTTCCC
ATCTATGAAGGTTATGCATTACCACATGCTATTCTTCGTCTTGACTTAGCTGGTCGAGAT
TTGACTGATTATTTGATGAAAATCTTAACTGAACGTGGTTATTCATTTGTAACAACAGCT
GAACGTGAAATAGTTCGTGATATCAAAGAAAAACTATGTTATGTTGCACTAGATTTTGAA
CAAGAAATGGCTACAGCTGCATCAACATCATCACTAGAAAAAAGCTATGAACTACCTGAT
GGTCAAGTCATTACAATTGGTAATTAACGATTTCGATGTCCTGAAGCATTATTTCAACCA
AGTTTTCTTGGAATGGAAACTGCTGGTAAGATAT-TTGATACGCCAATCTTCTTCT----
-------------ATATCAATCTATCTAATTTTTGTTTGACTAGGTATTCATGAAACAAC
CTATAACTCAATAATGAAATGTGATATTGATATTCGTAAAGATTTGTATGCTAATACAGT
TTTATCTGGCGGTACAACAATGTATCCGGGTATTGCTGATCG------------------
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--
>Trih_adh|AJ549224.1_cds_CAD70272.1_1 [gene=actin] [db_xref=GOA:Q7YTV5,HSSP:1NLV,InterPro:IPR004000,InterPro:IPR004001,InterPro:IPR020902,UniProtKB/TrEMBL:Q7YTV5] [protein=actin] [protein_id=CAD70272.1] [location=132..1262] [gbkey=CDS]
ATGTCAGAAGAAGATGTTCAAGCTTTGGTAATCGACAATGGCTCCGGTATGTGTAAAGCC
GGATTTGCTGGCGATGATGCTCCTCGTGCTGTTTTCCCTTCAATCGTCGGCCGACCTCGC
CATCAAGGTATCATGGTTGGAATGGGTCAAAAAGACTCGTATGTTGGTGACGAAGCACAA
AGTAAGAGAGGTATCCTTACCTTGAAATATCCTATCGAGCACGGAATTGTCACTAACTGG
GATGATATGGAAAAGATCTGGCATCACACTTTTTACAACGAATTGCGTGTAGCTCCAGAA
GAACATCCCGTCTTACTAACTGAAGCTCCCATGAATCCCAAAGCTAACCGTGAAAAAATG
ACTCAAATCATGTTCGAAACATTCAACACC------------------------------
---------------CCAGCTATGTATGTCAACATCCAAGCTGTACTATCCTTGTATGCT
TCTGGTCGTACTACTGGTATCGTTCTCGATTCTGGCGATGGTGTAAGCCATACCGTTCCA
ATCTACGAAGGTTACGCTTTGCCTCATGCTATGATGCGTTTGGACTTGGCTGGCCGTGAC
TTAACTGACTACATGATGAAAATCTTGACTGAACGTGGCTATACTTTCACTACTACCGCT
GAACGTGAAATCGTTCGTGATATCAAGGAAAAATTAGCCTATGTTGCTTTAGACTTTGAG
CAAGAAATGCAAACCGCTGCTTCTAGTTCAAGCCTTGAAAAGAGCTATGAATTACCTGAC
GGTCAAGTCATCACCATTGGTAATGAACGATTCCGCTGCCCAGAAGCTCTCTTCCAACCC
GCTTTCTTAGGTATGGAATCCGCTGG----------------------------------
---------------------------------------------TATCCACGAAACTAC
CTACAACTCTGTAATGAAATGCGACGTCGATATTCGAAAAGACTTATACAGTAATATTGT
CTTGTCTGGCGGTACTACTATGTTCCCTGGTATTGCTGACCGTATGCAAAAGGAAATTGT
TAGCTTGGCACCTCCAACTATGAAAATTAAGATCGTTGCTCCACCAGAAAGGAAATACTC
TGTCTGGATCGGAGGATCTATTTTGGCTAGTTTATCCACCTTCCAACAGATGTGGATCTC
CAAACAAGAATACGATGAATCTGGCCCCGCTATCGTTCACCGTAAATGCTTCTAA-----
--
>act433f
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---------------------------------------------------------GCA
AGTGGTCGAACAACTGG-------------------------------------------
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--
>C_act821r
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------CTTGGAATGGAAACTGCTGG----------------------------------
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--
>C_act1009r
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---------------------------------CATTGCACCACCTGAACGTA-------
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--