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DEG from tradeseq #260
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Dear developers, @HectorRDB @jwokaty @nturaga @sandrinedudoit , Wondering whether anyone of you could help answer my question regarding tradeseq output in the attach! I recently adapted my code based on your vignettes:
I understand you are very busy and appreciate if you could help! Kind Regards, Synat |
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Dear Authors,
I used tradeSeq for my monocle3 object to find DEG of various lineage along trajectory. Output provides gene names, waldStat, pvalue and meanLogFC.
This is my first time doing tradeSeq. Therefore, I am wondering whether p-value here referered ajust-pvalue? How to know which genes are upregulated and downregulated. Less than 1 is down or greater than 1 is up? because I did not see any negative meanLogFC in my tradeSeq output at all. Hope you could help review and give me some answers.
Kind Regards,
Synat
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