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tidyseurat::aggregate_cells doesn't pull all meta.data columns of Seurat object? #81
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Hello, Only metadata columns relative to samples and features are pulled. the ones about cells do not fit bulk data anymore. @william-hutchison could you please add a message to the aggregate_cells of tidyseurat and tidySCE communicating this? Only for tidyseurat also add a second message that says that you can then use tidySE to convert to SE with the code .. Please @denvercal1234GitHub confirm that such message is very understandable by you. Otherwise please propose an alternative. |
The comment that But, I am confused about the conversion to SE using Thank you both. |
actually is tidybulk::as_SummarizedExperiment you want SE if you do bulk analyses for example. many tools including tidybulk accept SE |
I see. |
Hi there,
Thanks for a great tool.
tidyseurat::aggregate_cells
only pull some but not all metadata columns of the original Seurat object.Would you mind taking a look?
Thank you again.
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