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lfric_test.yml
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# -----------------------------------------------------------------------------
# BSD 3-Clause License
#
# Copyright (c) 2023-2024, Science and Technology Facilities Council.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# * Redistributions of source code must retain the above copyright notice, this
# list of conditions and the following disclaimer.
#
# * Redistributions in binary form must reproduce the above copyright notice,
# this list of conditions and the following disclaimer in the documentation
# and/or other materials provided with the distribution.
#
# * Neither the name of the copyright holder nor the names of its
# contributors may be used to endorse or promote products derived from
# this software without specific prior written permission.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
# FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
# COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
# INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
# BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
# LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN
# ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
# POSSIBILITY OF SUCH DAMAGE.
# -----------------------------------------------------------------------------
# Author S. Siso, STFC Daresbury Lab
# This workflow will use a self-hosted runner to perform the more expensive
# integrations tests that are not run on GHA systems.
name: LFRic Integration Tests
on:
push
jobs:
run_if_on_mirror:
if: ${{ github.repository == 'stfc/PSyclone-mirror' }}
runs-on: self-hosted
env:
LFRIC_APPS_REV: 3269
PYTHON_VERSION: 3.12.5
steps:
- uses: actions/checkout@v3
with:
submodules: recursive
# This is required to get the commit history for merge commits for
# the ci-skip check below.
fetch-depth: '0'
- name: Check for [skip ci] in commit message
uses: mstachniuk/ci-skip@v1
with:
# This setting causes the tests to 'fail' if [skip ci] is specified
fail-fast: true
commit-filter: '[skip ci]'
- name: Install dependencies
run: |
# Use a specific version of Python (rather than the system-wide one).
module load python/${PYTHON_VERSION}
python -m venv .runner_venv
. .runner_venv/bin/activate
python -m pip install --upgrade pip
# Uncomment the below to use the submodule version of fparser rather
# than the latest release from pypi.
# pip install external/fparser
pip install .[test]
pip install jinja2
# PSyclone, compile and run MetOffice gungho_model on GPU
- name: LFRic GungHo with OpenACC offload
run: |
# Set up environment
source /apps/spack/psyclone-spack/spack-repo/share/spack/setup-env.sh
spack load lfric-build-environment%nvhpc
source .runner_venv/bin/activate
export PSYCLONE_LFRIC_DIR=${GITHUB_WORKSPACE}/examples/lfric/scripts
export PSYCLONE_CONFIG_FILE=${PSYCLONE_LFRIC_DIR}/KGOs/lfric_psyclone.cfg
# The LFRic source must be patched to workaround bugs in the NVIDIA
# compiler's namelist handling.
rm -rf ${HOME}/LFRic/gpu_build
mkdir -p ${HOME}/LFRic/gpu_build
cp -r ${HOME}/LFRic/lfric_apps_${LFRIC_APPS_REV} ${HOME}/LFRic/gpu_build/lfric_apps
cp -r ${HOME}/LFRic/lfric_core_50869 ${HOME}/LFRic/gpu_build/lfric
cd ${HOME}/LFRic/gpu_build
patch -p1 < ../lfric_${LFRIC_APPS_REV}_nvidia.patch
# Update the compiler definitions to build for GPU
cp ../nvfortran.mk lfric/infrastructure/build/fortran/.
cp ../nvc++.mk lfric/infrastructure/build/cxx/.
# Update dependencies.sh to point to our patched lfric core.
sed -i -e 's/export lfric_core_sources=.*$/export lfric_core_sources\=\/home\/gh_runner\/LFRic\/gpu_build\/lfric/' lfric_apps/dependencies.sh
export LFRIC_DIR=${HOME}/LFRic/gpu_build/lfric_apps
export OPT_DIR=${LFRIC_DIR}/applications/gungho_model/optimisation/psyclone-test
cd ${LFRIC_DIR}
# PSyclone scripts must now be under 'optimisation' and be called 'global.py'
mkdir -p ${OPT_DIR}
cp ${PSYCLONE_LFRIC_DIR}/acc_parallel.py ${OPT_DIR}/global.py
# Clean previous version and compile again
rm -rf applications/gungho_model/working
./build/local_build.py -a gungho_model -p psyclone-test
cd applications/gungho_model/example
cp ${PSYCLONE_LFRIC_DIR}/KGOs/lfric_gungho_configuration_4its.nml configuration.nml
mpirun -n 1 ../bin/gungho_model configuration.nml |& tee output.txt
python ${PSYCLONE_LFRIC_DIR}/compare_ouput.py ${PSYCLONE_LFRIC_DIR}/KGOs/lfric_gungho_configuration_4its_checksums.txt gungho_model-checksums.txt
cat timer.txt
export VAR_TIME=$(grep "gungho_model" timer.txt | cut -d'|' -f5)
export VAR_HALOS=$(grep "gungho_model" halo_calls_counter.txt | cut -d'|' -f5)
echo $GITHUB_REF_NAME $GITHUB_SHA $VAR_TIME $VAR_HALOS >> ${HOME}/store_results/lfric_acc_performance_history
${HOME}/mongosh-2.1.1-linux-x64/bin/mongosh \
"mongodb+srv://cluster0.x8ncpxi.mongodb.net/PerformanceMonitoring" \
--quiet --apiVersion 1 --username ${{ secrets.MONGODB_USERNAME }} \
--password ${{ secrets.MONGODB_PASSWORD }} \
--eval 'db.GitHub_CI.insertOne({branch_name: "'"$GITHUB_REF_NAME"'", commit: "'"$GITHUB_SHA"'",
github_job: "'"$GITHUB_RUN_ID"'"-"'"$GITHUB_RUN_ATTEMPT"'",
# TODO - update revision 2222 below.
ci_test: "LFRic OpenACC", lfric_apps_version: '"$LFRIC_APPS_REV"', system: "GlaDos",
compiler:"spack-nvhpc-24.5", date: new Date(), elapsed_time: '"$VAR_TIME"',
num_of_halo_exchanges: '"$VAR_HALOS"'})'
# PSyclone, compile and run MetOffice LFRic with 6 MPI ranks
- name: LFRic passthrough (with DistributedMemory)
run: |
# Set up environment
source /apps/spack/psyclone-spack/spack-repo/share/spack/setup-env.sh
spack load lfric-build-environment%gcc@14
source .runner_venv/bin/activate
export PSYCLONE_LFRIC_DIR=${GITHUB_WORKSPACE}/examples/lfric/scripts
export PSYCLONE_CONFIG_FILE=${PSYCLONE_LFRIC_DIR}/KGOs/lfric_psyclone.cfg
export LFRIC_DIR=${HOME}/LFRic/lfric_apps_${LFRIC_APPS_REV}
cd ${LFRIC_DIR}
# Clean previous version and compile again
rm -rf applications/gungho_model/working
./build/local_build.py -a gungho_model -v
# Run
cd applications/gungho_model/example
cp ${PSYCLONE_LFRIC_DIR}/KGOs/lfric_gungho_configuration_4its.nml configuration.nml
mpirun -n 6 ../bin/gungho_model configuration.nml |& tee output.txt
python ${PSYCLONE_LFRIC_DIR}/compare_ouput.py ${PSYCLONE_LFRIC_DIR}/KGOs/lfric_gungho_configuration_4its_checksums.txt gungho_model-checksums.txt
cat timer.txt
export VAR_TIME=$(grep "gungho_model" timer.txt | cut -d'|' -f5)
export VAR_HALOS=$(grep "gungho_model" halo_calls_counter.txt | cut -d'|' -f5)
echo $GITHUB_REF_NAME $GITHUB_SHA $VAR_TIME $VAR_HALOS >> ${HOME}/store_results/lfric_passthrough_performance_history
${HOME}/mongosh-2.1.1-linux-x64/bin/mongosh \
"mongodb+srv://cluster0.x8ncpxi.mongodb.net/PerformanceMonitoring" \
--quiet --apiVersion 1 --username ${{ secrets.MONGODB_USERNAME }} \
--password ${{ secrets.MONGODB_PASSWORD }} \
--eval 'db.GitHub_CI.insertOne({branch_name: "'"$GITHUB_REF_NAME"'", commit: "'"$GITHUB_SHA"'",
github_job: "'"$GITHUB_RUN_ID"'"-"'"$GITHUB_RUN_ATTEMPT"'",
ci_test: "LFRic Passthrough with DM", lfric_apps_version: '"$LFRIC_APPS_REV"', system: "GlaDos",
compiler:"spack-gfortran-14", date: new Date(), elapsed_time: '"$VAR_TIME"',
num_of_halo_exchanges: '"$VAR_HALOS"'})'
- name: Upload LFRic passthrough results
uses: exuanbo/actions-deploy-gist@v1
with:
token: ${{ secrets.GIST_TOKEN }}
gist_id: a4049a0fc0a0a11651a5ce6a04d76160
file_path: ../../../../store_results/lfric_passthrough_performance_history
# PSyclone, compile and run MetOffice LFRic with all optimisations and 6 OpenMP threads
- name: LFRic with all transformations
run: |
# Set up environment
source /apps/spack/psyclone-spack/spack-repo/share/spack/setup-env.sh
spack load lfric-build-environment%gcc@14
source .runner_venv/bin/activate
export PSYCLONE_LFRIC_DIR=${GITHUB_WORKSPACE}/examples/lfric/scripts
export PSYCLONE_CONFIG_FILE=${PSYCLONE_LFRIC_DIR}/KGOs/lfric_psyclone.cfg
export LFRIC_DIR=${HOME}/LFRic/lfric_apps_${LFRIC_APPS_REV}
export OPT_DIR=${LFRIC_DIR}/applications/gungho_model/optimisation/psyclone-test
cd ${LFRIC_DIR}
# PSyclone scripts must now be under 'optimisation' and be called 'global.py'
mkdir -p applications/gungho_model/optimisation/psyclone-test
cp ${PSYCLONE_LFRIC_DIR}/everything_everywhere_all_at_once.py ${OPT_DIR}/global.py
# Clean previous version and compile again
rm -rf applications/gungho_model/working
./build/local_build.py -a gungho_model -p psyclone-test -v
# Run
cd applications/gungho_model/example
cp ${PSYCLONE_LFRIC_DIR}/KGOs/lfric_gungho_configuration_4its.nml configuration.nml
export OMP_NUM_THREADS=6
mpirun -n 1 ../bin/gungho_model configuration.nml |& tee output.txt
python ${PSYCLONE_LFRIC_DIR}/compare_ouput.py ${PSYCLONE_LFRIC_DIR}/KGOs/lfric_gungho_configuration_4its_checksums.txt gungho_model-checksums.txt
cat timer.txt
export VAR_TIME=$(grep "gungho_model" timer.txt | cut -d'|' -f5)
export VAR_HALOS=$(grep "gungho_model" halo_calls_counter.txt | cut -d'|' -f5)
echo $GITHUB_REF_NAME $GITHUB_SHA $VAR_TIME $VAR_HALOS >> ${HOME}/store_results/lfric_optimised_performance_history
${HOME}/mongosh-2.1.1-linux-x64/bin/mongosh \
"mongodb+srv://cluster0.x8ncpxi.mongodb.net/PerformanceMonitoring" \
--quiet --apiVersion 1 --username ${{ secrets.MONGODB_USERNAME }} \
--password ${{ secrets.MONGODB_PASSWORD }} \
--eval 'db.GitHub_CI.insertOne({branch_name: "'"$GITHUB_REF_NAME"'", commit: "'"$GITHUB_SHA"'",
github_job: "'"$GITHUB_RUN_ID"'"-"'"$GITHUB_RUN_ATTEMPT"'",
ci_test: "LFRic all transformations", lfric_version: '"$LFRIC_APPS_REV"', omp_threads: '"$OMP_NUM_THREADS"',
system: "GlaDos", compiler:"spack-gfortran-14", date: new Date(), elapsed_time: '"$VAR_TIME"',
num_of_halo_exchanges: '"$VAR_HALOS"'})'
- name: Upload LFRic optimised results
uses: exuanbo/actions-deploy-gist@v1
with:
token: ${{ secrets.GIST_TOKEN }}
gist_id: a4049a0fc0a0a11651a5ce6a04d76160
file_path: ../../../../store_results/lfric_optimised_performance_history