config_paper_hdn.yaml

parameters:
    network_file : ''
    sp_matrix: ""
    rwr_matrix: ""
    geneset_file: ''
    geneset_csv: ''
    outpath: 'results/hdn/'
    diagnostic_folder: ''
    
topology:
    analyse: ['module','rwr', 'sp']
    number_of_permutations: 3
    cores: 1

association:
    analyse: ['']
    geneset_B : ''
    number_of_permutations: 3
    cores: 1

within_comparison:
    analyse: []
    number_of_permutations: 3
    cores: 1

figures:
    extension: ['png', 'pdf']
    outpath: 'results/hdn/'

hdn_parameters:
    number_simulations: 5
    n_nodes: 1000
    network_probability: [0.06, 0.1, 0.2]
    hdn_probability: [0.1,0.05]
    hdn_percentage: [2,4]

sbm_parameters:
    number_simulations: 2
    n_nodes: 10
    theta0: '0.9,0.7,0.3,0.1'
    percentage: '0.1'
    density: '0.5'