Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

RegionHeatmap order #1745

Open
umutcakir opened this issue Jul 10, 2024 · 0 comments
Open

RegionHeatmap order #1745

umutcakir opened this issue Jul 10, 2024 · 0 comments

Comments

@umutcakir
Copy link

umutcakir commented Jul 10, 2024

Dear community,

I plot fragment counts using RegionHeatmap. This is my code and the output is attached:

RM <- RegionMatrix(
ATAC,
range,
key = 'key',
assay = 'peaks',
upstream = 3000,
downstream = 3000
)

heatmap <- RegionHeatmap(
RM,
key = 'key',
assay = 'peaks',
normalize = TRUE,
upstream = 3000,
downstream = 3000,
max.cutoff = "q95",
cols = NULL,
min.counts = 1,
window = 6000/30,
order = TRUE,
nrow = 1
)

How can I change the order of identities? (Like 0,1,2,3,4,5,6,7,8, etc. instead of 0,1,10,11)

image

Thank you in advance for your help.

@umutcakir umutcakir changed the title RegionHeatmap RegionHeatmap order Jul 10, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant