NAMESPACE

# Generated by roxygen2: do not edit by hand

export(buildMetaData)
export(callACRs)
export(callClusters)
export(cleanData)
export(coAccess)
export(convertSparseData)
export(countRemoveOrganelle)
export(detectDoublets)
export(filterDoublets)
export(findCells)
export(generateMatrix)
export(loadBEDandGenomeData)
export(loadSparseData)
export(logisticModel)
export(mergeQCdataRDS)
export(mergeSocratesRDS)
export(plotUMAP)
export(projectUMAP)
export(reduceDims)
export(regModel)
export(regModel2)
export(standardizeResiduals)
export(tfidf)
export(writeReadME)
import(DelayedArray)
import(Matrix)
import(RColorBrewer)
import(Seurat)
import(SeuratObject)
import(cicero)
import(doSNOW)
import(glmnet)
import(iterators)
import(itertools)
import(parallel)
import(scales)
import(viridis)
importFrom(CMF,matrix_to_triplets)
importFrom(FNN,get.knn)
importFrom(GenomicFeatures,makeTxDbFromGFF)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,promoters)
importFrom(GenomicRanges,tileGenome)
importFrom(IRanges,subsetByOverlaps)
importFrom(MASS,kde2d)
importFrom(Matrix,colMeans)
importFrom(Matrix,colSums)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Matrix,sparseMatrix)
importFrom(RcppML,nmf)
importFrom(irlba,irlba)
importFrom(nabor,knn)
importFrom(parallel,mclapply)
importFrom(uwot,umap)
importFrom(viridis,magma)