- Flux balance analysis and its variants (FBA)
- Flux Variability Analysis (FVA)
- Atomically resolve a metabolic reconstruction (atomicallyResolveReconstruction)
- Minimal spanning pathway vectors (minSpan)
- Relaxed Flux Balance Analysis (relaxedFBA)
- Sparse Flux Balance Analysis (sparseFBA)
- Uniform sampling of steady-state fluxes (uniformSampling)
- Variational kinetic modelling (variationalKinetics)
- Thermodynamically constrain a metabolic model (vonBertalanffy)
analysis
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