Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Multi-animal bottom-up training: python(36403,0x7ff855b867c0) malloc: *** error for object 0x600005d481a4: pointer being freed was not allocated #2016

Open
1 of 4 tasks
ValeriePineauNoel opened this issue Nov 4, 2024 · 2 comments
Assignees
Labels
2024-hackathon documentation This issue exists because the documentation is outdated.

Comments

@ValeriePineauNoel
Copy link

ValeriePineauNoel commented Nov 4, 2024

Bug description

I use my own labeled dataset and I want to train SLEAP with multi-animal bottom pipeline. I go through the GUI to train.

Expected behaviour

Training works.

Actual behaviour

I have an error at the very beginning of the training

[...]
INFO:sleap.nn.training:Created run path: /Users/dcclab/Documents/vpineaunoel/GitHub/AutomaticBehaviourAnalysis/mice_vivarium_sleap/models/20241104-MultianimalBottomUp241104_110233.multi_instance.n=1540
INFO:sleap.nn.training:Setting up visualization...
python(36403,0x7ff855b867c0) malloc: *** error for object 0x600005d481a4: pointer being freed was not allocated
python(36403,0x7ff855b867c0) malloc: *** set a breakpoint in malloc_error_break to debug
Run Path: /Users/dcclab/Documents/vpineaunoel/GitHub/AutomaticBehaviourAnalysis/mice_vivarium_sleap/models/20241104-MultianimalBottomUp241104_110233.multi_instance.n=1540

I thought it was a problem with the memory so I changed the maximal number of threads to 16 before launching the SLEAP GUI with export OMP_NUM_THREADS=16 but I still have the error.

Your personal set up

  • OS: MacOS Pro 2019
  • Processor : 3.2 GHz 16-Core Intel Xeon W
  • Memory : 768 GB 2933 MHz DDR4
  • GPU : AMD Radeon Pro Vega II, 32 GB of VRAM
  • Version(s): SLEAP 1.3.3, python 3.9.15, tensorflow 2.12.0 (I actually installed tensorflow-metal to use my GPU), numpy 1.23.00 (I changed that to make all dependencies work)
Environment packages

mamba list :

# packages in environment at /Users/dcclab/miniforge3/envs/sleap:
#
# Name                    Version                   Build  Channel
abseil-cpp                20211102.0           hddbf539_3    conda-forge
absl-py                   2.1.0              pyhd8ed1ab_0    conda-forge
aiohappyeyeballs          2.4.3              pyhd8ed1ab_0    conda-forge
aiohttp                   3.10.10          py39h33701b3_0    conda-forge
aiosignal                 1.3.1              pyhd8ed1ab_0    conda-forge
aom                       3.5.0                hf0c8a7f_0    conda-forge
astunparse                1.6.3              pyhd8ed1ab_2    conda-forge
async-timeout             4.0.3              pyhd8ed1ab_0    conda-forge
attrs                     23.1.0                   pypi_0    pypi
blinker                   1.8.2              pyhd8ed1ab_0    conda-forge
blosc                     1.21.5               heccf04b_0    conda-forge
brotli                    1.0.9                hb7f2c08_9    conda-forge
brotli-bin                1.0.9                hb7f2c08_9    conda-forge
brotli-python             1.0.9            py39h7a8716b_9    conda-forge
brunsli                   0.1                  h046ec9c_0    conda-forge
bzip2                     1.0.8                hfdf4475_7    conda-forge
c-ares                    1.34.2               h32b1619_0    conda-forge
c-blosc2                  2.12.0               h0ae8482_0    conda-forge
ca-certificates           2024.8.30            h8857fd0_0    conda-forge
cached-property           1.5.2                hd8ed1ab_1    conda-forge
cached_property           1.5.2              pyha770c72_1    conda-forge
cachetools                5.5.0              pyhd8ed1ab_0    conda-forge
cairo                     1.16.0            h904041c_1014    conda-forge
cattrs                    1.1.1              pyhd8ed1ab_0    conda-forge
certifi                   2024.8.30          pyhd8ed1ab_0    conda-forge
cffi                      1.17.1           py39h8ddeee6_0    conda-forge
cfitsio                   4.2.0                hd56cc12_0    conda-forge
charls                    2.3.4                he49afe7_0    conda-forge
charset-normalizer        3.4.0              pyhd8ed1ab_0    conda-forge
click                     8.1.7           unix_pyh707e725_0    conda-forge
contourpy                 1.2.1            py39h0ca7971_0    conda-forge
cryptography              39.0.0           py39h7eb6a14_0    conda-forge
cycler                    0.12.1             pyhd8ed1ab_0    conda-forge
dav1d                     1.2.1                h0dc2134_0    conda-forge
efficientnet              1.0.0                    pypi_0    pypi
expat                     2.6.3                hac325c4_0    conda-forge
ffmpeg                    4.4.2           gpl_h8b4fe81_112    conda-forge
flatbuffers               24.3.25                  pypi_0    pypi
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 h77eed37_3    conda-forge
fontconfig                2.14.2               h5bb23bf_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fonttools                 4.54.1           py39h20cc651_1    conda-forge
freetype                  2.12.1               h60636b9_2    conda-forge
frozenlist                1.5.0            py39h296a897_0    conda-forge
gast                      0.4.0              pyh9f0ad1d_0    conda-forge
geos                      3.13.0               hac325c4_0    conda-forge
gettext                   0.22.5               hdfe23c8_3    conda-forge
gettext-tools             0.22.5               hdfe23c8_3    conda-forge
giflib                    5.2.2                h10d778d_0    conda-forge
glib                      2.80.2               h0f68cf7_0    conda-forge
glib-tools                2.80.2               hc27840c_0    conda-forge
gmp                       6.3.0                hf036a51_2    conda-forge
gnutls                    3.7.9                h1951705_0    conda-forge
google-auth               2.35.0             pyhff2d567_0    conda-forge
google-auth-oauthlib      1.0.0                    pypi_0    pypi
google-pasta              0.2.0              pyhd8ed1ab_1    conda-forge
graphite2                 1.3.13            h73e2aa4_1003    conda-forge
grpc-cpp                  1.46.4               hea9d06c_3    conda-forge
grpcio                    1.67.1                   pypi_0    pypi
gst-plugins-base          1.22.9               h3fb38fc_1    conda-forge
gstreamer                 1.22.9               hf63bbb8_1    conda-forge
h2                        4.1.0              pyhd8ed1ab_0    conda-forge
h5py                      3.8.0           nompi_py39h7d40783_100    conda-forge
harfbuzz                  5.3.0                h08f8713_0    conda-forge
hdf5                      1.12.2          nompi_h70e9adf_101    conda-forge
hpack                     4.0.0              pyh9f0ad1d_0    conda-forge
hyperframe                6.0.1              pyhd8ed1ab_0    conda-forge
icu                       70.1                 h96cf925_0    conda-forge
idna                      3.10               pyhd8ed1ab_0    conda-forge
image-classifiers         1.0.0                    pypi_0    pypi
imagecodecs               2022.9.26        py39h8036967_4    conda-forge
imageio                   2.36.0             pyh12aca89_1    conda-forge
imgaug                    0.4.0              pyhd8ed1ab_1    conda-forge
imgstore                  0.2.9                    pypi_0    pypi
importlib-metadata        8.5.0              pyha770c72_0    conda-forge
importlib-resources       6.4.5              pyhd8ed1ab_0    conda-forge
importlib_resources       6.4.5              pyhd8ed1ab_0    conda-forge
jasper                    2.0.33               h7c6fec8_1    conda-forge
jax                       0.4.30                   pypi_0    pypi
jaxlib                    0.4.30                   pypi_0    pypi
joblib                    1.4.2              pyhd8ed1ab_0    conda-forge
jpeg                      9e                   hb7f2c08_3    conda-forge
jsmin                     3.0.1              pyhd8ed1ab_0    conda-forge
jsonpickle                1.2                        py_0    conda-forge
jsonschema                4.19.0                   pypi_0    pypi
jsonschema-specifications 2023.7.1                 pypi_0    pypi
jxrlib                    1.1                  h10d778d_3    conda-forge
keras                     2.12.0                   pypi_0    pypi
keras-applications        1.0.8                    pypi_0    pypi
keras-preprocessing       1.1.2              pyhd8ed1ab_0    conda-forge
kiwisolver                1.4.7            py39h0d8d0ca_0    conda-forge
krb5                      1.20.1               h0165f36_0    conda-forge
lame                      3.100             hb7f2c08_1003    conda-forge
lazy-loader               0.4                pyhd8ed1ab_1    conda-forge
lazy_loader               0.4                pyhd8ed1ab_1    conda-forge
lcms2                     2.14                 h90f4b2a_0    conda-forge
lerc                      4.0.0                hb486fe8_0    conda-forge
libabseil                 20211102.0      cxx17_h844d122_3    conda-forge
libaec                    1.1.3                h73e2aa4_0    conda-forge
libasprintf               0.22.5               hdfe23c8_3    conda-forge
libasprintf-devel         0.22.5               hdfe23c8_3    conda-forge
libavif                   0.11.1               h22361c6_2    conda-forge
libblas                   3.9.0           20_osx64_openblas    conda-forge
libbrotlicommon           1.0.9                hb7f2c08_9    conda-forge
libbrotlidec              1.0.9                hb7f2c08_9    conda-forge
libbrotlienc              1.0.9                hb7f2c08_9    conda-forge
libcblas                  3.9.0           20_osx64_openblas    conda-forge
libclang                  18.1.1                   pypi_0    pypi
libclang13                16.0.1          default_h395b6a0_0    conda-forge
libcurl                   7.87.0               haf73cf8_0    conda-forge
libcxx                    19.1.2               hf95d169_0    conda-forge
libdeflate                1.14                 hb7f2c08_0    conda-forge
libedit                   3.1.20191231         h0678c8f_2    conda-forge
libev                     4.33                 h10d778d_2    conda-forge
libexpat                  2.6.3                hac325c4_0    conda-forge
libffi                    3.4.2                h0d85af4_5    conda-forge
libgettextpo              0.22.5               hdfe23c8_3    conda-forge
libgettextpo-devel        0.22.5               hdfe23c8_3    conda-forge
libgfortran               5.0.0           13_2_0_h97931a8_3    conda-forge
libgfortran5              13.2.0               h2873a65_3    conda-forge
libglib                   2.80.2               h0f68cf7_0    conda-forge
libiconv                  1.17                 hd75f5a5_2    conda-forge
libidn2                   2.3.7                h10d778d_0    conda-forge
libintl                   0.22.5               hdfe23c8_3    conda-forge
libintl-devel             0.22.5               hdfe23c8_3    conda-forge
liblapack                 3.9.0           20_osx64_openblas    conda-forge
liblapacke                3.9.0           20_osx64_openblas    conda-forge
libllvm13                 13.0.1               h64f94b2_2    conda-forge
libllvm16                 16.0.1               h7001e86_0    conda-forge
libnghttp2                1.51.0               h0dd9d14_0    conda-forge
libogg                    1.3.5                hfdf4475_0    conda-forge
libopenblas               0.3.25          openmp_hfef2a42_0    conda-forge
libopencv                 4.6.0            py39h93c2317_3    conda-forge
libopus                   1.3.1                hc929b4f_1    conda-forge
libpng                    1.6.43               h92b6c6a_0    conda-forge
libpq                     15.1                 hdbdeef1_3    conda-forge
libprotobuf               3.20.3               hbc0c0cd_0    conda-forge
libsodium                 1.0.18               hbcb3906_1    conda-forge
libsqlite                 3.46.0               h1b8f9f3_0    conda-forge
libssh2                   1.10.0               h7535e13_3    conda-forge
libtasn1                  4.19.0               hb7f2c08_0    conda-forge
libtiff                   4.4.0                h6268bbc_5    conda-forge
libunistring              0.9.10               h0d85af4_0    conda-forge
libvorbis                 1.3.7                h046ec9c_0    conda-forge
libvpx                    1.11.0               he49afe7_3    conda-forge
libwebp-base              1.4.0                h10d778d_0    conda-forge
libxcb                    1.13              h0d85af4_1004    conda-forge
libxml2                   2.10.3               h201ad9d_4    conda-forge
libxslt                   1.1.37               h5d22bc9_0    conda-forge
libzlib                   1.2.13               h87427d6_6    conda-forge
libzopfli                 1.0.3                h046ec9c_0    conda-forge
llvm-openmp               19.1.2               hf78d878_0    conda-forge
lz4-c                     1.9.4                hf0c8a7f_0    conda-forge
markdown                  3.6                pyhd8ed1ab_0    conda-forge
markdown-it-py            3.0.0              pyhd8ed1ab_0    conda-forge
markupsafe                3.0.2            py39h20cc651_0    conda-forge
matplotlib-base           3.8.4            py39hfca4cae_2    conda-forge
mdurl                     0.1.2              pyhd8ed1ab_0    conda-forge
ml-dtypes                 0.5.0                    pypi_0    pypi
multidict                 6.1.0            py39h781ac47_1    conda-forge
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
mysql-common              8.0.32               h7ebae80_0    conda-forge
mysql-libs                8.0.32               hc37e033_0    conda-forge
ncurses                   6.5                  hf036a51_1    conda-forge
ndx-pose                  0.1.1                    pypi_0    pypi
nettle                    3.9.1                h8e11ae5_0    conda-forge
networkx                  3.2.1              pyhd8ed1ab_0    conda-forge
nixio                     1.5.3                    pypi_0    pypi
nspr                      4.36                 h97d8b74_0    conda-forge
nss                       3.100                h6606ded_0    conda-forge
numexpr                   2.10.0           py39hbb604f3_0    conda-forge
numpy                     1.23.0                   pypi_0    pypi
oauthlib                  3.2.2              pyhd8ed1ab_0    conda-forge
opencv                    4.6.0            py39h6e9494a_3    conda-forge
openh264                  2.3.1                hf0c8a7f_2    conda-forge
openjpeg                  2.5.0                h5d0d7b0_1    conda-forge
openssl                   1.1.1w               h8a1eda9_0    conda-forge
opt_einsum                3.4.0              pyhd8ed1ab_0    conda-forge
p11-kit                   0.24.1               h65f8906_0    conda-forge
packaging                 24.1               pyhd8ed1ab_0    conda-forge
pandas                    2.2.3            py39h88a5ddd_1    conda-forge
patsy                     0.5.6              pyhd8ed1ab_0    conda-forge
pcre2                     10.43                h0ad2156_0    conda-forge
pillow                    9.2.0            py39h35d4919_3    conda-forge
pip                       24.2               pyh8b19718_1    conda-forge
pixman                    0.43.4               h73e2aa4_0    conda-forge
propcache                 0.2.0            py39h06d86d0_2    conda-forge
protobuf                  3.20.3           py39h7a8716b_1    conda-forge
psutil                    6.1.0            py39h296a897_0    conda-forge
pthread-stubs             0.4               h00291cd_1002    conda-forge
py-opencv                 4.6.0            py39h71a6800_3    conda-forge
pyasn1                    0.6.1              pyhd8ed1ab_1    conda-forge
pyasn1-modules            0.4.1              pyhd8ed1ab_0    conda-forge
pycparser                 2.22               pyhd8ed1ab_0    conda-forge
pygments                  2.18.0             pyhd8ed1ab_0    conda-forge
pyjwt                     2.9.0              pyhd8ed1ab_1    conda-forge
pykalman                  0.9.7              pyhd8ed1ab_0    conda-forge
pynwb                     2.5.0                    pypi_0    pypi
pyopenssl                 23.2.0             pyhd8ed1ab_1    conda-forge
pyparsing                 3.2.0              pyhd8ed1ab_1    conda-forge
pyside2                   5.15.8           py39heedc0ee_2    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
pytables                  3.7.0            py39hc15ac9a_3    conda-forge
python                    3.9.15          h531fd05_0_cpython    conda-forge
python-dateutil           2.9.0              pyhd8ed1ab_0    conda-forge
python-rapidjson          1.20             py39h09c4c31_0    conda-forge
python-tzdata             2024.2             pyhd8ed1ab_0    conda-forge
python_abi                3.9                      5_cp39    conda-forge
pytz                      2024.1             pyhd8ed1ab_0    conda-forge
pyu2f                     0.1.5              pyhd8ed1ab_0    conda-forge
pywavelets                1.6.0            py39hb943cd9_0    conda-forge
pyyaml                    6.0.2            py39h06d86d0_1    conda-forge
pyzmq                     26.2.0           py39ha6bd863_0    conda-forge
qimage2ndarray            1.10.0                   pypi_0    pypi
qt-main                   5.15.8               h1d3b3f8_6    conda-forge
qtpy                      2.4.1              pyhd8ed1ab_0    conda-forge
re2                       2022.06.01           hb486fe8_1    conda-forge
readline                  8.2                  h9e318b2_1    conda-forge
referencing               0.30.2                   pypi_0    pypi
requests                  2.32.3             pyhd8ed1ab_0    conda-forge
requests-oauthlib         2.0.0              pyhd8ed1ab_0    conda-forge
rich                      13.9.3             pyhd8ed1ab_0    conda-forge
rpds-py                   0.10.3                   pypi_0    pypi
rsa                       4.9                pyhd8ed1ab_0    conda-forge
ruamel-yaml               0.17.32                  pypi_0    pypi
ruamel-yaml-clib          0.2.7                    pypi_0    pypi
scikit-image              0.24.0           py39hbb604f3_1    conda-forge
scikit-learn              1.0              py39hd2caeff_1    conda-forge
scikit-video              1.1.11             pyh24bf2e0_0    conda-forge
scipy                     1.9.0            py39h29d19b3_0    conda-forge
seaborn                   0.13.2               hd8ed1ab_2    conda-forge
seaborn-base              0.13.2             pyhd8ed1ab_2    conda-forge
segmentation-models       1.0.1                    pypi_0    pypi
setuptools                75.1.0             pyhd8ed1ab_0    conda-forge
shapely                   2.0.6            py39hfde7aa9_2    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
sleap                     1.3.3                    pypi_0    pypi
snappy                    1.1.10               h6dc393e_1    conda-forge
sqlite                    3.46.0               h28673e1_0    conda-forge
statsmodels               0.14.4           py39hff9a475_0    conda-forge
svt-av1                   1.4.1                hf0c8a7f_0    conda-forge
tensorboard               2.12.3                   pypi_0    pypi
tensorboard-data-server   0.7.2                    pypi_0    pypi
tensorboard-plugin-wit    1.8.1              pyhd8ed1ab_0    conda-forge
tensorflow                2.9.1           cpu_py39hb0a6171_0    conda-forge
tensorflow-estimator      2.12.0                   pypi_0    pypi
tensorflow-hub            0.12.0             pyhca92ed8_0    conda-forge
tensorflow-io-gcs-filesystem 0.37.1                   pypi_0    pypi
tensorflow-macos          2.12.0                   pypi_0    pypi
tensorflow-metal          1.0.0                    pypi_0    pypi
termcolor                 2.5.0              pyhd8ed1ab_0    conda-forge
threadpoolctl             3.5.0              pyhc1e730c_0    conda-forge
tifffile                  2022.10.10         pyhd8ed1ab_0    conda-forge
tk                        8.6.13               h1abcd95_1    conda-forge
typing-extensions         4.12.2               hd8ed1ab_0    conda-forge
typing_extensions         4.12.2             pyha770c72_0    conda-forge
tzdata                    2024b                hc8b5060_0    conda-forge
tzlocal                   5.0.1                    pypi_0    pypi
unicodedata2              15.1.0           py39h296a897_1    conda-forge
urllib3                   2.2.3              pyhd8ed1ab_0    conda-forge
werkzeug                  3.0.6              pyhd8ed1ab_0    conda-forge
wheel                     0.44.0             pyhd8ed1ab_0    conda-forge
wrapt                     1.14.1                   pypi_0    pypi
x264                      1!164.3095           h775f41a_2    conda-forge
x265                      3.5                  hbb4e6a2_3    conda-forge
xorg-libxau               1.0.11               h00291cd_1    conda-forge
xorg-libxdmcp             1.1.5                h00291cd_0    conda-forge
xz                        5.2.6                h775f41a_0    conda-forge
yaml                      0.2.5                h0d85af4_2    conda-forge
yarl                      1.16.0           py39h296a897_0    conda-forge
zeromq                    4.3.5                h93d8f39_0    conda-forge
zfp                       1.0.1                h469392a_2    conda-forge
zipp                      3.20.2             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               h87427d6_6    conda-forge
zlib-ng                   2.0.7                hb7f2c08_0    conda-forge
zstandard                 0.23.0           py39hc23f734_1    conda-forge
zstd                      1.5.6                h915ae27_0    conda-forge
Logs
==========SYSTEM==========

utc:			2024-11-04 16:16:30.456948
python:			3.9.15
system:			Darwin, x86_64, 23.3.0, Darwin Kernel Version 23.3.0: Wed Dec 20 21:28:58 PST 2023; root:xnu-10002.81.5~7/RELEASE_X86_64
path:			/Users/dcclab/miniforge3/envs/sleap/bin:/Users/dcclab/miniforge3/condabin:/usr/local/bin:/usr/local/sbin:/Library/Frameworks/Python.framework/Versions/3.10/bin:/usr/local/mysql/bin:/opt/anaconda3/bin:/opt/local/bin:/opt/local/sbin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Library/Apple/usr/bin

==========IMPORTS==========

sleap import:			True
sleap path:			/Users/dcclab/miniforge3/envs/sleap/lib/python3.9/site-packages/sleap/__init__.py
sleap version:			1.3.3
pyside2 import:			True
pyside path:			/Users/dcclab/miniforge3/envs/sleap/lib/python3.9/site-packages/PySide2/__init__.py
successfully created PySide2.QtWidgets.QApplication instance

pyside6 import:			False
cv2 import:			True

==========GIT==========

cf3f7f1dfa1a193055f5526c95b8cd94084570bd

Valerie-Train-SLEAP-with-multanimal-bottom-up-(better-comparison-with-DeepLabCut)


==========TENSORFLOW==========

tensorflow import:			True
tensorflow version:			2.12.0
tensorflow path:			/Users/dcclab/miniforge3/envs/sleap/lib/python3.9/site-packages/tensorflow/__init__.py
gpus:			[PhysicalDevice(name='/physical_device:GPU:0', device_type='GPU')]

==========CONDA==========

# packages in environment at /Users/dcclab/miniforge3/envs/sleap:
#
# Name                    Version                   Build  Channel
abseil-cpp                20211102.0           hddbf539_3    conda-forge
absl-py                   2.1.0              pyhd8ed1ab_0    conda-forge
aiohappyeyeballs          2.4.3              pyhd8ed1ab_0    conda-forge
aiohttp                   3.10.10          py39h33701b3_0    conda-forge
aiosignal                 1.3.1              pyhd8ed1ab_0    conda-forge
aom                       3.5.0                hf0c8a7f_0    conda-forge
astunparse                1.6.3              pyhd8ed1ab_2    conda-forge
async-timeout             4.0.3              pyhd8ed1ab_0    conda-forge
attrs                     23.1.0                   pypi_0    pypi
blinker                   1.8.2              pyhd8ed1ab_0    conda-forge
blosc                     1.21.5               heccf04b_0    conda-forge
brotli                    1.0.9                hb7f2c08_9    conda-forge
brotli-bin                1.0.9                hb7f2c08_9    conda-forge
brotli-python             1.0.9            py39h7a8716b_9    conda-forge
brunsli                   0.1                  h046ec9c_0    conda-forge
bzip2                     1.0.8                hfdf4475_7    conda-forge
c-ares                    1.34.2               h32b1619_0    conda-forge
c-blosc2                  2.12.0               h0ae8482_0    conda-forge
ca-certificates           2024.8.30            h8857fd0_0    conda-forge
cached-property           1.5.2                hd8ed1ab_1    conda-forge
cached_property           1.5.2              pyha770c72_1    conda-forge
cachetools                5.5.0              pyhd8ed1ab_0    conda-forge
cairo                     1.16.0            h904041c_1014    conda-forge
cattrs                    1.1.1              pyhd8ed1ab_0    conda-forge
certifi                   2024.8.30          pyhd8ed1ab_0    conda-forge
cffi                      1.17.1           py39h8ddeee6_0    conda-forge
cfitsio                   4.2.0                hd56cc12_0    conda-forge
charls                    2.3.4                he49afe7_0    conda-forge
charset-normalizer        3.4.0              pyhd8ed1ab_0    conda-forge
click                     8.1.7           unix_pyh707e725_0    conda-forge
contourpy                 1.2.1            py39h0ca7971_0    conda-forge
cryptography              39.0.0           py39h7eb6a14_0    conda-forge
cycler                    0.12.1             pyhd8ed1ab_0    conda-forge
dav1d                     1.2.1                h0dc2134_0    conda-forge
efficientnet              1.0.0                    pypi_0    pypi
expat                     2.6.3                hac325c4_0    conda-forge
ffmpeg                    4.4.2           gpl_h8b4fe81_112    conda-forge
flatbuffers               24.3.25                  pypi_0    pypi
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 h77eed37_3    conda-forge
fontconfig                2.14.2               h5bb23bf_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fonttools                 4.54.1           py39h20cc651_1    conda-forge
freetype                  2.12.1               h60636b9_2    conda-forge
frozenlist                1.5.0            py39h296a897_0    conda-forge
gast                      0.4.0              pyh9f0ad1d_0    conda-forge
geos                      3.13.0               hac325c4_0    conda-forge
gettext                   0.22.5               hdfe23c8_3    conda-forge
gettext-tools             0.22.5               hdfe23c8_3    conda-forge
giflib                    5.2.2                h10d778d_0    conda-forge
glib                      2.80.2               h0f68cf7_0    conda-forge
glib-tools                2.80.2               hc27840c_0    conda-forge
gmp                       6.3.0                hf036a51_2    conda-forge
gnutls                    3.7.9                h1951705_0    conda-forge
google-auth               2.35.0             pyhff2d567_0    conda-forge
google-auth-oauthlib      1.0.0                    pypi_0    pypi
google-pasta              0.2.0              pyhd8ed1ab_1    conda-forge
graphite2                 1.3.13            h73e2aa4_1003    conda-forge
grpc-cpp                  1.46.4               hea9d06c_3    conda-forge
grpcio                    1.67.1                   pypi_0    pypi
gst-plugins-base          1.22.9               h3fb38fc_1    conda-forge
gstreamer                 1.22.9               hf63bbb8_1    conda-forge
h2                        4.1.0              pyhd8ed1ab_0    conda-forge
h5py                      3.8.0           nompi_py39h7d40783_100    conda-forge
harfbuzz                  5.3.0                h08f8713_0    conda-forge
hdf5                      1.12.2          nompi_h70e9adf_101    conda-forge
hpack                     4.0.0              pyh9f0ad1d_0    conda-forge
hyperframe                6.0.1              pyhd8ed1ab_0    conda-forge
icu                       70.1                 h96cf925_0    conda-forge
idna                      3.10               pyhd8ed1ab_0    conda-forge
image-classifiers         1.0.0                    pypi_0    pypi
imagecodecs               2022.9.26        py39h8036967_4    conda-forge
imageio                   2.36.0             pyh12aca89_1    conda-forge
imgaug                    0.4.0              pyhd8ed1ab_1    conda-forge
imgstore                  0.2.9                    pypi_0    pypi
importlib-metadata        8.5.0              pyha770c72_0    conda-forge
importlib-resources       6.4.5              pyhd8ed1ab_0    conda-forge
importlib_resources       6.4.5              pyhd8ed1ab_0    conda-forge
jasper                    2.0.33               h7c6fec8_1    conda-forge
jax                       0.4.30                   pypi_0    pypi
jaxlib                    0.4.30                   pypi_0    pypi
joblib                    1.4.2              pyhd8ed1ab_0    conda-forge
jpeg                      9e                   hb7f2c08_3    conda-forge
jsmin                     3.0.1              pyhd8ed1ab_0    conda-forge
jsonpickle                1.2                        py_0    conda-forge
jsonschema                4.19.0                   pypi_0    pypi
jsonschema-specifications 2023.7.1                 pypi_0    pypi
jxrlib                    1.1                  h10d778d_3    conda-forge
keras                     2.12.0                   pypi_0    pypi
keras-applications        1.0.8                    pypi_0    pypi
keras-preprocessing       1.1.2              pyhd8ed1ab_0    conda-forge
kiwisolver                1.4.7            py39h0d8d0ca_0    conda-forge
krb5                      1.20.1               h0165f36_0    conda-forge
lame                      3.100             hb7f2c08_1003    conda-forge
lazy-loader               0.4                pyhd8ed1ab_1    conda-forge
lazy_loader               0.4                pyhd8ed1ab_1    conda-forge
lcms2                     2.14                 h90f4b2a_0    conda-forge
lerc                      4.0.0                hb486fe8_0    conda-forge
libabseil                 20211102.0      cxx17_h844d122_3    conda-forge
libaec                    1.1.3                h73e2aa4_0    conda-forge
libasprintf               0.22.5               hdfe23c8_3    conda-forge
libasprintf-devel         0.22.5               hdfe23c8_3    conda-forge
libavif                   0.11.1               h22361c6_2    conda-forge
libblas                   3.9.0           20_osx64_openblas    conda-forge
libbrotlicommon           1.0.9                hb7f2c08_9    conda-forge
libbrotlidec              1.0.9                hb7f2c08_9    conda-forge
libbrotlienc              1.0.9                hb7f2c08_9    conda-forge
libcblas                  3.9.0           20_osx64_openblas    conda-forge
libclang                  18.1.1                   pypi_0    pypi
libclang13                16.0.1          default_h395b6a0_0    conda-forge
libcurl                   7.87.0               haf73cf8_0    conda-forge
libcxx                    19.1.2               hf95d169_0    conda-forge
libdeflate                1.14                 hb7f2c08_0    conda-forge
libedit                   3.1.20191231         h0678c8f_2    conda-forge
libev                     4.33                 h10d778d_2    conda-forge
libexpat                  2.6.3                hac325c4_0    conda-forge
libffi                    3.4.2                h0d85af4_5    conda-forge
libgettextpo              0.22.5               hdfe23c8_3    conda-forge
libgettextpo-devel        0.22.5               hdfe23c8_3    conda-forge
libgfortran               5.0.0           13_2_0_h97931a8_3    conda-forge
libgfortran5              13.2.0               h2873a65_3    conda-forge
libglib                   2.80.2               h0f68cf7_0    conda-forge
libiconv                  1.17                 hd75f5a5_2    conda-forge
libidn2                   2.3.7                h10d778d_0    conda-forge
libintl                   0.22.5               hdfe23c8_3    conda-forge
libintl-devel             0.22.5               hdfe23c8_3    conda-forge
liblapack                 3.9.0           20_osx64_openblas    conda-forge
liblapacke                3.9.0           20_osx64_openblas    conda-forge
libllvm13                 13.0.1               h64f94b2_2    conda-forge
libllvm16                 16.0.1               h7001e86_0    conda-forge
libnghttp2                1.51.0               h0dd9d14_0    conda-forge
libogg                    1.3.5                hfdf4475_0    conda-forge
libopenblas               0.3.25          openmp_hfef2a42_0    conda-forge
libopencv                 4.6.0            py39h93c2317_3    conda-forge
libopus                   1.3.1                hc929b4f_1    conda-forge
libpng                    1.6.43               h92b6c6a_0    conda-forge
libpq                     15.1                 hdbdeef1_3    conda-forge
libprotobuf               3.20.3               hbc0c0cd_0    conda-forge
libsodium                 1.0.18               hbcb3906_1    conda-forge
libsqlite                 3.46.0               h1b8f9f3_0    conda-forge
libssh2                   1.10.0               h7535e13_3    conda-forge
libtasn1                  4.19.0               hb7f2c08_0    conda-forge
libtiff                   4.4.0                h6268bbc_5    conda-forge
libunistring              0.9.10               h0d85af4_0    conda-forge
libvorbis                 1.3.7                h046ec9c_0    conda-forge
libvpx                    1.11.0               he49afe7_3    conda-forge
libwebp-base              1.4.0                h10d778d_0    conda-forge
libxcb                    1.13              h0d85af4_1004    conda-forge
libxml2                   2.10.3               h201ad9d_4    conda-forge
libxslt                   1.1.37               h5d22bc9_0    conda-forge
libzlib                   1.2.13               h87427d6_6    conda-forge
libzopfli                 1.0.3                h046ec9c_0    conda-forge
llvm-openmp               19.1.2               hf78d878_0    conda-forge
lz4-c                     1.9.4                hf0c8a7f_0    conda-forge
markdown                  3.6                pyhd8ed1ab_0    conda-forge
markdown-it-py            3.0.0              pyhd8ed1ab_0    conda-forge
markupsafe                3.0.2            py39h20cc651_0    conda-forge
matplotlib-base           3.8.4            py39hfca4cae_2    conda-forge
mdurl                     0.1.2              pyhd8ed1ab_0    conda-forge
ml-dtypes                 0.5.0                    pypi_0    pypi
multidict                 6.1.0            py39h781ac47_1    conda-forge
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
mysql-common              8.0.32               h7ebae80_0    conda-forge
mysql-libs                8.0.32               hc37e033_0    conda-forge
ncurses                   6.5                  hf036a51_1    conda-forge
ndx-pose                  0.1.1                    pypi_0    pypi
nettle                    3.9.1                h8e11ae5_0    conda-forge
networkx                  3.2.1              pyhd8ed1ab_0    conda-forge
nixio                     1.5.3                    pypi_0    pypi
nspr                      4.36                 h97d8b74_0    conda-forge
nss                       3.100                h6606ded_0    conda-forge
numexpr                   2.10.0           py39hbb604f3_0    conda-forge
numpy                     1.23.0                   pypi_0    pypi
oauthlib                  3.2.2              pyhd8ed1ab_0    conda-forge
opencv                    4.6.0            py39h6e9494a_3    conda-forge
openh264                  2.3.1                hf0c8a7f_2    conda-forge
openjpeg                  2.5.0                h5d0d7b0_1    conda-forge
openssl                   1.1.1w               h8a1eda9_0    conda-forge
opt_einsum                3.4.0              pyhd8ed1ab_0    conda-forge
p11-kit                   0.24.1               h65f8906_0    conda-forge
packaging                 24.1               pyhd8ed1ab_0    conda-forge
pandas                    2.2.3            py39h88a5ddd_1    conda-forge
patsy                     0.5.6              pyhd8ed1ab_0    conda-forge
pcre2                     10.43                h0ad2156_0    conda-forge
pillow                    9.2.0            py39h35d4919_3    conda-forge
pip                       24.2               pyh8b19718_1    conda-forge
pixman                    0.43.4               h73e2aa4_0    conda-forge
propcache                 0.2.0            py39h06d86d0_2    conda-forge
protobuf                  3.20.3           py39h7a8716b_1    conda-forge
psutil                    6.1.0            py39h296a897_0    conda-forge
pthread-stubs             0.4               h00291cd_1002    conda-forge
py-opencv                 4.6.0            py39h71a6800_3    conda-forge
pyasn1                    0.6.1              pyhd8ed1ab_1    conda-forge
pyasn1-modules            0.4.1              pyhd8ed1ab_0    conda-forge
pycparser                 2.22               pyhd8ed1ab_0    conda-forge
pygments                  2.18.0             pyhd8ed1ab_0    conda-forge
pyjwt                     2.9.0              pyhd8ed1ab_1    conda-forge
pykalman                  0.9.7              pyhd8ed1ab_0    conda-forge
pynwb                     2.5.0                    pypi_0    pypi
pyopenssl                 23.2.0             pyhd8ed1ab_1    conda-forge
pyparsing                 3.2.0              pyhd8ed1ab_1    conda-forge
pyside2                   5.15.8           py39heedc0ee_2    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
pytables                  3.7.0            py39hc15ac9a_3    conda-forge
python                    3.9.15          h531fd05_0_cpython    conda-forge
python-dateutil           2.9.0              pyhd8ed1ab_0    conda-forge
python-rapidjson          1.20             py39h09c4c31_0    conda-forge
python-tzdata             2024.2             pyhd8ed1ab_0    conda-forge
python_abi                3.9                      5_cp39    conda-forge
pytz                      2024.1             pyhd8ed1ab_0    conda-forge
pyu2f                     0.1.5              pyhd8ed1ab_0    conda-forge
pywavelets                1.6.0            py39hb943cd9_0    conda-forge
pyyaml                    6.0.2            py39h06d86d0_1    conda-forge
pyzmq                     26.2.0           py39ha6bd863_0    conda-forge
qimage2ndarray            1.10.0                   pypi_0    pypi
qt-main                   5.15.8               h1d3b3f8_6    conda-forge
qtpy                      2.4.1              pyhd8ed1ab_0    conda-forge
re2                       2022.06.01           hb486fe8_1    conda-forge
readline                  8.2                  h9e318b2_1    conda-forge
referencing               0.30.2                   pypi_0    pypi
requests                  2.32.3             pyhd8ed1ab_0    conda-forge
requests-oauthlib         2.0.0              pyhd8ed1ab_0    conda-forge
rich                      13.9.3             pyhd8ed1ab_0    conda-forge
rpds-py                   0.10.3                   pypi_0    pypi
rsa                       4.9                pyhd8ed1ab_0    conda-forge
ruamel-yaml               0.17.32                  pypi_0    pypi
ruamel-yaml-clib          0.2.7                    pypi_0    pypi
scikit-image              0.24.0           py39hbb604f3_1    conda-forge
scikit-learn              1.0              py39hd2caeff_1    conda-forge
scikit-video              1.1.11             pyh24bf2e0_0    conda-forge
scipy                     1.9.0            py39h29d19b3_0    conda-forge
seaborn                   0.13.2               hd8ed1ab_2    conda-forge
seaborn-base              0.13.2             pyhd8ed1ab_2    conda-forge
segmentation-models       1.0.1                    pypi_0    pypi
setuptools                75.1.0             pyhd8ed1ab_0    conda-forge
shapely                   2.0.6            py39hfde7aa9_2    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
sleap                     1.3.3                    pypi_0    pypi
snappy                    1.1.10               h6dc393e_1    conda-forge
sqlite                    3.46.0               h28673e1_0    conda-forge
statsmodels               0.14.4           py39hff9a475_0    conda-forge
svt-av1                   1.4.1                hf0c8a7f_0    conda-forge
tensorboard               2.12.3                   pypi_0    pypi
tensorboard-data-server   0.7.2                    pypi_0    pypi
tensorboard-plugin-wit    1.8.1              pyhd8ed1ab_0    conda-forge
tensorflow                2.9.1           cpu_py39hb0a6171_0    conda-forge
tensorflow-estimator      2.12.0                   pypi_0    pypi
tensorflow-hub            0.12.0             pyhca92ed8_0    conda-forge
tensorflow-io-gcs-filesystem 0.37.1                   pypi_0    pypi
tensorflow-macos          2.12.0                   pypi_0    pypi
tensorflow-metal          1.0.0                    pypi_0    pypi
termcolor                 2.5.0              pyhd8ed1ab_0    conda-forge
threadpoolctl             3.5.0              pyhc1e730c_0    conda-forge
tifffile                  2022.10.10         pyhd8ed1ab_0    conda-forge
tk                        8.6.13               h1abcd95_1    conda-forge
typing-extensions         4.12.2               hd8ed1ab_0    conda-forge
typing_extensions         4.12.2             pyha770c72_0    conda-forge
tzdata                    2024b                hc8b5060_0    conda-forge
tzlocal                   5.0.1                    pypi_0    pypi
unicodedata2              15.1.0           py39h296a897_1    conda-forge
urllib3                   2.2.3              pyhd8ed1ab_0    conda-forge
werkzeug                  3.0.6              pyhd8ed1ab_0    conda-forge
wheel                     0.44.0             pyhd8ed1ab_0    conda-forge
wrapt                     1.14.1                   pypi_0    pypi
x264                      1!164.3095           h775f41a_2    conda-forge
x265                      3.5                  hbb4e6a2_3    conda-forge
xorg-libxau               1.0.11               h00291cd_1    conda-forge
xorg-libxdmcp             1.1.5                h00291cd_0    conda-forge
xz                        5.2.6                h775f41a_0    conda-forge
yaml                      0.2.5                h0d85af4_2    conda-forge
yarl                      1.16.0           py39h296a897_0    conda-forge
zeromq                    4.3.5                h93d8f39_0    conda-forge
zfp                       1.0.1                h469392a_2    conda-forge
zipp                      3.20.2             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               h87427d6_6    conda-forge
zlib-ng                   2.0.7                hb7f2c08_0    conda-forge
zstandard                 0.23.0           py39hc23f734_1    conda-forge
zstd                      1.5.6                h915ae27_0    conda-forge


==========PIP==========

absl-py @ file:///home/conda/feedstock_root/build_artifacts/absl-py_1705494584803/work
aiohappyeyeballs @ file:///home/conda/feedstock_root/build_artifacts/aiohappyeyeballs_1727779797566/work
aiohttp @ file:///Users/runner/miniforge3/conda-bld/aiohttp_1728629000337/work
aiosignal @ file:///home/conda/feedstock_root/build_artifacts/aiosignal_1667935791922/work
astunparse @ file:///home/conda/feedstock_root/build_artifacts/astunparse_1728923142236/work
async-timeout @ file:///home/conda/feedstock_root/build_artifacts/async-timeout_1691763562544/work
attrs==23.1.0
blinker @ file:///home/conda/feedstock_root/build_artifacts/blinker_1715091184126/work
Brotli @ file:///Users/runner/miniforge3/conda-bld/brotli-split_1687884187023/work
cached-property @ file:///home/conda/feedstock_root/build_artifacts/cached_property_1615209429212/work
cachetools @ file:///home/conda/feedstock_root/build_artifacts/cachetools_1724028158384/work
cattrs @ file:///home/conda/feedstock_root/build_artifacts/cattrs_1604136207372/work
certifi @ file:///home/conda/feedstock_root/build_artifacts/certifi_1725278078093/work/certifi
cffi @ file:///Users/runner/miniforge3/conda-bld/cffi_1725560567968/work
charset-normalizer @ file:///home/conda/feedstock_root/build_artifacts/charset-normalizer_1728479282467/work
click @ file:///home/conda/feedstock_root/build_artifacts/click_1692311806742/work
contourpy @ file:///Users/runner/miniforge3/conda-bld/contourpy_1712429956050/work
cryptography @ file:///Users/runner/miniforge3/conda-bld/cryptography-split_1672672491497/work
cycler @ file:///home/conda/feedstock_root/build_artifacts/cycler_1696677705766/work
efficientnet==1.0.0
flatbuffers==24.3.25
fonttools @ file:///Users/runner/miniforge3/conda-bld/fonttools_1729530356476/work
frozenlist @ file:///Users/runner/miniforge3/conda-bld/frozenlist_1729699486805/work
gast @ file:///home/conda/feedstock_root/build_artifacts/gast_1596839682936/work
google-auth @ file:///home/conda/feedstock_root/build_artifacts/google-auth_1726832896641/work
google-auth-oauthlib==1.0.0
google-pasta @ file:///home/conda/feedstock_root/build_artifacts/google-pasta_1722873999312/work
grpcio==1.67.1
h2 @ file:///home/conda/feedstock_root/build_artifacts/h2_1634280454336/work
h5py @ file:///Users/runner/miniforge3/conda-bld/h5py_1674499365073/work
hdmf==3.9.0
hpack==4.0.0
hyperframe @ file:///home/conda/feedstock_root/build_artifacts/hyperframe_1619110129307/work
idna @ file:///home/conda/feedstock_root/build_artifacts/idna_1726459485162/work
image-classifiers==1.0.0
imagecodecs @ file:///Users/runner/miniforge3/conda-bld/imagecodecs_1668867656682/work
imageio @ file:///home/conda/feedstock_root/build_artifacts/imageio_1729190692267/work
imgaug @ file:///home/conda/feedstock_root/build_artifacts/imgaug_1640909786103/work
imgstore==0.2.9
importlib_metadata @ file:///home/conda/feedstock_root/build_artifacts/importlib-metadata_1726082825846/work
importlib_resources @ file:///home/conda/feedstock_root/build_artifacts/importlib_resources_1725921340658/work
jax==0.4.30
jaxlib==0.4.30
joblib @ file:///home/conda/feedstock_root/build_artifacts/joblib_1714665484399/work
jsmin @ file:///home/conda/feedstock_root/build_artifacts/jsmin_1642532731678/work
jsonpickle==1.2
jsonschema==4.19.0
jsonschema-specifications==2023.7.1
keras==2.12.0
Keras-Applications==1.0.8
Keras-Preprocessing @ file:///home/conda/feedstock_root/build_artifacts/keras-preprocessing_1610713559828/work
kiwisolver @ file:///Users/runner/miniforge3/conda-bld/kiwisolver_1725459195356/work
lazy_loader @ file:///home/conda/feedstock_root/build_artifacts/lazy-loader_1723774329602/work
libclang==18.1.1
Markdown @ file:///home/conda/feedstock_root/build_artifacts/markdown_1710435156458/work
markdown-it-py @ file:///home/conda/feedstock_root/build_artifacts/markdown-it-py_1686175045316/work
MarkupSafe @ file:///Users/runner/miniforge3/conda-bld/markupsafe_1729351318299/work
matplotlib @ file:///Users/runner/miniforge3/conda-bld/matplotlib-suite_1715976186715/work
mdurl @ file:///home/conda/feedstock_root/build_artifacts/mdurl_1704317613764/work
ml_dtypes==0.5.0
multidict @ file:///Users/runner/miniforge3/conda-bld/multidict_1729065493631/work
munkres==1.1.4
ndx-pose==0.1.1
networkx @ file:///home/conda/feedstock_root/build_artifacts/networkx_1698504735452/work
nixio==1.5.3
numexpr @ file:///Users/runner/miniforge3/conda-bld/numexpr_1716812180135/work
numpy==1.23.0
oauthlib @ file:///home/conda/feedstock_root/build_artifacts/oauthlib_1666056362788/work
opencv-python==4.6.0
opt_einsum @ file:///home/conda/feedstock_root/build_artifacts/opt_einsum_1727392354687/work
packaging @ file:///home/conda/feedstock_root/build_artifacts/packaging_1718189413536/work
pandas @ file:///Users/runner/miniforge3/conda-bld/pandas_1726878426767/work
patsy @ file:///home/conda/feedstock_root/build_artifacts/patsy_1704469236901/work
Pillow @ file:///Users/runner/miniforge3/conda-bld/pillow_1666920647802/work
propcache @ file:///Users/runner/miniforge3/conda-bld/propcache_1728545746686/work
protobuf==3.20.3
psutil @ file:///Users/runner/miniforge3/conda-bld/psutil_1729847081697/work
pyasn1 @ file:///home/conda/feedstock_root/build_artifacts/pyasn1_1726839225972/work
pyasn1_modules @ file:///home/conda/feedstock_root/build_artifacts/pyasn1-modules_1726029546107/work
pycparser @ file:///home/conda/feedstock_root/build_artifacts/pycparser_1711811537435/work
Pygments @ file:///home/conda/feedstock_root/build_artifacts/pygments_1714846767233/work
PyJWT @ file:///home/conda/feedstock_root/build_artifacts/pyjwt_1722701264352/work
pykalman @ file:///home/conda/feedstock_root/build_artifacts/pykalman_1711547707628/work
pynwb==2.5.0
pyOpenSSL @ file:///home/conda/feedstock_root/build_artifacts/pyopenssl_1685514481738/work
pyparsing @ file:///home/conda/feedstock_root/build_artifacts/pyparsing_1728880423364/work
PySide2==5.15.8
PySocks @ file:///home/conda/feedstock_root/build_artifacts/pysocks_1661604839144/work
python-dateutil @ file:///home/conda/feedstock_root/build_artifacts/python-dateutil_1709299778482/work
python-rapidjson @ file:///Users/runner/miniforge3/conda-bld/python-rapidjson_1722901885195/work
pytz @ file:///home/conda/feedstock_root/build_artifacts/pytz_1706886791323/work
pyu2f @ file:///home/conda/feedstock_root/build_artifacts/pyu2f_1604248910016/work
PyWavelets==1.6.0
PyYAML @ file:///Users/runner/miniforge3/conda-bld/pyyaml_1725456176118/work
pyzmq @ file:///Users/runner/miniforge3/conda-bld/pyzmq_1724399128390/work
qimage2ndarray==1.10.0
QtPy @ file:///home/conda/feedstock_root/build_artifacts/qtpy_1698112029416/work
referencing==0.30.2
requests @ file:///home/conda/feedstock_root/build_artifacts/requests_1717057054362/work
requests-oauthlib @ file:///home/conda/feedstock_root/build_artifacts/requests-oauthlib_1711290127547/work
rich @ file:///home/conda/feedstock_root/build_artifacts/rich_1729622917073/work/dist
rpds-py==0.10.3
rsa @ file:///home/conda/feedstock_root/build_artifacts/rsa_1658328885051/work
ruamel.yaml==0.17.32
ruamel.yaml.clib==0.2.7
scikit-image @ file:///Users/runner/miniforge3/conda-bld/scikit-image_1719499435765/work/dist/scikit_image-0.24.0-cp39-cp39-macosx_10_13_x86_64.whl#sha256=dc1cb9c710a4541be80ed6d8503634ad2ba466ccd9a3abe9d2e6617fe07dc874
scikit-learn @ file:///Users/runner/miniforge3/conda-bld/scikit-learn_1632611470401/work
scikit-video==1.1.11
scipy==1.9.0
seaborn @ file:///home/conda/feedstock_root/build_artifacts/seaborn-split_1714494649443/work
segmentation-models==1.0.1
shapely @ file:///Users/runner/miniforge3/conda-bld/shapely_1727273432006/work
shiboken2==5.15.8
six @ file:///home/conda/feedstock_root/build_artifacts/six_1620240208055/work
sleap==1.3.3
statsmodels @ file:///Users/runner/miniforge3/conda-bld/statsmodels_1727986739068/work
tables @ file:///Users/runner/miniforge3/conda-bld/pytables_1666850070504/work
tensorboard==2.12.3
tensorboard-data-server==0.7.2
tensorboard-plugin-wit @ file:///home/conda/feedstock_root/build_artifacts/tensorboard-plugin-wit_1641458951060/work/tensorboard_plugin_wit-1.8.1-py3-none-any.whl
tensorflow-estimator==2.12.0
tensorflow-hub @ file:///home/conda/feedstock_root/build_artifacts/tensorflow-hub_1618768305670/work/wheel_dir/tensorflow_hub-0.12.0-py2.py3-none-any.whl
tensorflow-io-gcs-filesystem==0.37.1
tensorflow-macos==2.12.0
tensorflow-metal==1.0.0
termcolor @ file:///home/conda/feedstock_root/build_artifacts/termcolor_1728288976871/work
threadpoolctl @ file:///home/conda/feedstock_root/build_artifacts/threadpoolctl_1714400101435/work
tifffile @ file:///home/conda/feedstock_root/build_artifacts/tifffile_1665588749940/work
typing_extensions @ file:///home/conda/feedstock_root/build_artifacts/typing_extensions_1717802530399/work
tzdata @ file:///home/conda/feedstock_root/build_artifacts/python-tzdata_1727140567071/work
tzlocal==5.0.1
unicodedata2 @ file:///Users/runner/miniforge3/conda-bld/unicodedata2_1729704644728/work
urllib3 @ file:///home/conda/feedstock_root/build_artifacts/urllib3_1726496430923/work
Werkzeug @ file:///home/conda/feedstock_root/build_artifacts/werkzeug_1729884156362/work
wrapt==1.14.1
yarl @ file:///Users/runner/miniforge3/conda-bld/yarl_1729798487102/work
zipp @ file:///home/conda/feedstock_root/build_artifacts/zipp_1726248574750/work
zstandard==0.23.0


==========NVIDIA==========

unable to locate nvidia-smi

Screenshots

How to reproduce

  1. Launch the GUI with sleap-label
  2. Open the project
  3. Predict > Run Training...
  4. Set the pipeline to Multi-animal bottom-up
  5. Validation fraction is set to 0.2
  6. No prediction for now
  7. I set the output with a name such as 20241104-MultianimalBottomUp
  8. Click on Run
  9. The error appears after around 10 seconds in the terminal
@eberrigan
Copy link
Contributor

Hi @ValeriePineauNoel,

We actually don't support training on anything besides NVIDIA GPUs or Silicon Macs.

We can make this more explicit in the documentation in the future.

While SLEAP is installable on Pre-M1 (MacOS without Silicon GPUs) we do not expect training to work as is.

Our recommendation is to have a workstation with a NVIDIA GPU for training models. Depending on how difficult your models are to train, a workstation with around 24 GB of GPU memory is a real asset for a project. If you are not training frequently or if your models aren't too difficult to train, 8 GB of GPU memory could be sufficient.

The Apple Mini's with the latest Silicon GPU is another good option. With the Silicon GPU hardware changing rapidly our team will have to prioritize the latest hardware to maintain compatibility with our software.

Best,

Elizabeth

@eberrigan eberrigan added documentation This issue exists because the documentation is outdated. and removed bug Something isn't working labels Nov 8, 2024
@ValeriePineauNoel
Copy link
Author

Thank you for your answer! I will take this into account.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
2024-hackathon documentation This issue exists because the documentation is outdated.
Projects
None yet
Development

No branches or pull requests

3 participants