diff --git a/tests/assembly/hic.py/inputs/seqids b/tests/assembly/hic.py/inputs/seqids new file mode 100644 index 00000000..4d4b7403 --- /dev/null +++ b/tests/assembly/hic.py/inputs/seqids @@ -0,0 +1 @@ +Cv_chr4,Le_chr4 diff --git a/tests/assembly/hic.py/inputs/test.bam b/tests/assembly/hic.py/inputs/test.bam new file mode 100644 index 00000000..206231cd Binary files /dev/null and b/tests/assembly/hic.py/inputs/test.bam differ diff --git a/tests/assembly/hic.py/references/test.resolution_500000.json b/tests/assembly/hic.py/references/test.resolution_500000.json new file mode 100644 index 00000000..b33346a3 --- /dev/null +++ b/tests/assembly/hic.py/references/test.resolution_500000.json @@ -0,0 +1,3015 @@ +{ + "distbinsizes": [ + 1, + 1, + 1, + 1, + 1, + 1, + 1, + 1, + 1, + 1, + 2, + 1, + 1, + 1, + 1, + 1, + 1, + 2, + 1, + 1, + 1, + 1, + 2, + 1, + 1, + 2, + 1, + 1, + 1, + 2, + 1, + 1, + 2, + 1, + 2, + 1, + 2, + 1, + 1, + 2, + 1, + 2, + 1, + 2, + 1, + 2, + 2, + 1, + 2, + 1, + 2, + 2, + 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288704667, + 291591714, + 294507631, + 297452708, + 300427235 + ], + "resolution": 500000, + "sizes": { + "Cv_chr4": 37, + "Le_chr4": 39 + }, + "starts": { + "Cv_chr4": 0, + "Le_chr4": 37 + }, + "total_bins": 76 +} \ No newline at end of file diff --git a/tests/assembly/hic.py/tests.yml b/tests/assembly/hic.py/tests.yml new file mode 100644 index 00000000..bceb604d --- /dev/null +++ b/tests/assembly/hic.py/tests.yml @@ -0,0 +1,6 @@ +bam2mat: + action: bam2mat + opts: --seqids=__DIR__/inputs/seqids + args: __DIR__/inputs/test.bam + outputs: [__DIR__/inputs/test.resolution_500000.json] + references: [references/test.resolution_500000.json] \ No newline at end of file