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Abricate_on_Metabat_bins.txt
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Abricate_on_Metabat_bins.txt
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Lmod is automatically replacing "intel/2020.1.217" with "gcc/9.3.0".
Due to MODULEPATH changes, the following have been reloaded:
1) openmpi/4.0.3
abricate databases are located in $EBROOTABRICATE/db
Using nucl database ncbi: 5386 sequences - 2021-Oct-12
Processing: MEGAHIT-COR01e_t2_M.10.fa
#FILE SEQUENCE START END STRAND GENE COVERAGE COVERAGE_MAP GAPS %COVERAGE %IDENTITY DATABASE ACCESSION PRODUCT RESISTANCE
Found 0 genes in MEGAHIT-COR01e_t2_M.10.fa
Tip: did you know? abricate was named after 'A'nti 'B'acterial 'R'esistiance
Done.
Processing: MEGAHIT-COR01e_t2_M.11.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.11.fa
Tip: you can use the --summary option to combine reports in a presence/absence matrix.
Done.
Processing: MEGAHIT-COR01e_t2_M.12.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.12.fa
Tip: remember that abricate is unable to find AMR-mediated SNPs.
Done.
Processing: MEGAHIT-COR01e_t2_M.13.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.13.fa
Tip: abricate can also find virulence factors; use --list to see all supported databases.
Done.
Processing: MEGAHIT-COR01e_t2_M.14.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.14.fa
Tip: remember that abricate is unable to find AMR-mediated SNPs.
Done.
Processing: MEGAHIT-COR01e_t2_M.15.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.15.fa
Tip: did you know? abricate was named after 'A'nti 'B'acterial 'R'esistiance
Done.
Processing: MEGAHIT-COR01e_t2_M.16.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.16.fa
Tip: remember that abricate is unable to find AMR-mediated SNPs.
Done.
Processing: MEGAHIT-COR01e_t2_M.17.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.17.fa
Tip: abricate can also find virulence factors; use --list to see all supported databases.
Done.
Processing: MEGAHIT-COR01e_t2_M.18.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.18.fa
Tip: the abricate manual is at https://github.com/tseemann/abricate/blob/master/README.md
Done.
Processing: MEGAHIT-COR01e_t2_M.19.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.19.fa
Tip: the --fofn option allows you to feed in a big list of files to run on.
Done.
Processing: MEGAHIT-COR01e_t2_M.1.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.1.fa
Tip: abricate can also find virulence factors; use --list to see all supported databases.
Done.
Processing: MEGAHIT-COR01e_t2_M.20.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.20.fa
Tip: found a bug in abricate? Post it at https://github.com/tseemann/abricate/issues.
Done.
Processing: MEGAHIT-COR01e_t2_M.21.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.21.fa
Tip: you can use the --summary option to combine reports in a presence/absence matrix.
Done.
Processing: MEGAHIT-COR01e_t2_M.22.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.22.fa
Tip: it's important to realise abricate uses DNA matching, not AA.
Done.
Processing: MEGAHIT-COR01e_t2_M.23.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.23.fa
Tip: it's important to realise abricate uses DNA matching, not AA.
Done.
Processing: MEGAHIT-COR01e_t2_M.24.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.24.fa
Tip: the abricate manual is at https://github.com/tseemann/abricate/blob/master/README.md
Done.
Processing: MEGAHIT-COR01e_t2_M.2.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.2.fa
Tip: abricate can also find virulence factors; use --list to see all supported databases.
Done.
Processing: MEGAHIT-COR01e_t2_M.3.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.3.fa
Tip: the abricate manual is at https://github.com/tseemann/abricate/blob/master/README.md
Done.
Processing: MEGAHIT-COR01e_t2_M.4.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.4.fa
Tip: found a bug in abricate? Post it at https://github.com/tseemann/abricate/issues.
Done.
Processing: MEGAHIT-COR01e_t2_M.5.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.5.fa
Tip: abricate can also find virulence factors; use --list to see all supported databases.
Done.
Processing: MEGAHIT-COR01e_t2_M.6.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.6.fa
Tip: did you know? abricate was named after 'A'nti 'B'acterial 'R'esistiance
Done.
Processing: MEGAHIT-COR01e_t2_M.7.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.7.fa
Tip: it's important to realise abricate uses DNA matching, not AA.
Done.
Processing: MEGAHIT-COR01e_t2_M.8.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.8.fa
Tip: have a suggestion for abricate? Tell me at https://github.com/tseemann/abricate/issues
Done.
Processing: MEGAHIT-COR01e_t2_M.9.fa
Found 0 genes in MEGAHIT-COR01e_t2_M.9.fa
Tip: abricate can also find virulence factors; use --list to see all supported databases.
Done.