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index.html
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index.html
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<html>
<head>
<title>assembly stats</title>
</head>
<body>
<link rel="stylesheet" type="text/css" href="css/circle-plot.css?v1">
<link rel="stylesheet" type="text/css" href="css/square-plot.css?v1">
<link rel="stylesheet" type="text/css" href="css/table.css?v1">
<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.12.2/jquery.min.js"></script>
<script src="https://d3js.org/d3.v3.min.js" charset="utf-8"></script>
<script src="js/d3-tip.js"></script>
<script type="text/javascript" src="js/circle-plot.js?v1"></script>
<script type="text/javascript" src="js/square-plot.js?v1"></script>
<script type="text/javascript" src="js/table.js?v1"></script>
<style>
html, body {
padding:0px;
margin:0px;
overflow:hidden;
}
#assembly {
text-align:center;
position:fixed;
top:0;
left:0;
bottom:0;
right:0;
font-family:helvetica,arial,sans-serif;font-size:14pt;
overflow:hidden;
}
#assembly_stats {
height:100%;
width:100%;
}
.asm-tab-container {
position:relative;width:100%;height:34px;text-align:center;
color:#555555;
background-color:#cccccc;
}
.asm-tab {
position:relative;width:50%;height:30px;display:inline-block;
font-size:12pt;
line-height:30px;
margin-left:-2px;
margin-top:2px;
border:solid 2px #555555;
border-top:none;
border-bottom:none;
cursor:pointer;
border-radius:17px;
}
.asm-tab.active {
color:black;
margin-top:0;
border:solid 2px #555555;
background-color:#bbbbbb;
}
.asm-tab:hover {
margin-top:0;
border:solid 2px #555555;
}
.asm-plot-container {
position:relative;width:100%;height:90%;text-align:center;
}
#assembly_stats_left {
position:relative;width:50%;height:90%;float:left;text-align:center;
}
#assembly_stats_right {
position:relative;width:50%;height:90%;float:right;text-align:center;
}
</style>
<div id="assembly_stats"></div>
<script>
var queries = window.location.href.replace(/^.+\?/,'').split('&')
var params = []
params["path"] = ["json/"]
params["assembly"] = ["output"]
params["view"] = ["circle"]
params["altView"] = ["cumulative", "table"]
queries.forEach(function(q){
parts = q.split('=')
if (!params[parts[0]]) params[parts[0]] = [];
params[parts[0]].push(parts[1])
})
var assemblies = params['assembly'];
var path = params['path'] || "json/";
if (params['altAssembly']) assemblies = assemblies.concat(params['altAssembly'])
var views = params['view'];
if (!views) views = ['circle']
var div = d3.select('div#assembly_stats')
if (params['altView']){
views = views.concat(params['altView'])
// generate tabs
var tab_container = div.append('div').attr('class','asm-tab-container')
var tabcount = views.length;
var tabwidth = 100;
for (var i = 0; i < tabcount; i++){
var tab_div = tab_container.append('div')
.attr('class',function(){if (i == 0) return 'asm-tab active'; return 'asm-tab'})
.style('width',tabwidth)
.text(views[i])
tab_div.on('click',function(){
d3.selectAll('.asm-tab').classed('active',false);
d3.select(this).classed('active',true);
var view = d3.select(this).text();
if (view == 'circle'){
plot_container.html('')
arr[0].drawPlot('asm-plot-container');
}
else if (view == 'compare') {
plot_container.html('')
compare(arr[0],arr[1]);
}
else if (view == 'cumulative') {
plot_container.html('')
arr[0].squarePlot('asm-plot-container');
arr[0].addKey(assemblies)
setTimeout(function(){
arr.forEach(function(asm,index){
if (index > 0){
var data = asm.prepareLine();
arr[0].addLine(data,asm.name,asm);
}
})
},250)
}
else if (view == 'table') {
plot_container.html('')
arr[0].drawTable('asm-plot-container');
//setTimeout(function(){
arr.forEach(function(asm,index){
if (index > 0){
arr[0].addColumn(asm);
}
})
//},250)
}
})
}
}
var plot_container = div.append('div').attr('class','asm-plot-container').attr('id','asm-plot-container')
document.title = assemblies[0] + " assembly stats"
var arr = [];
assemblies.forEach(function(assembly,index){
d3.json(path+assembly+".assembly-stats.json", function(error, json) {
if (error) return console.warn(error);
arr[index] = new Assembly (json);
arr[index].name = assembly.replace('.','_');;
if (views[0] == 'compare'){
if (index <= 1) compare(arr[0],arr[1]);
}
else if (views[0] == 'cumulative'){
if (index == 0){
arr[0].squarePlot('asm-plot-container');
arr[0].addKey(assemblies)
}
else {
var data = arr[index].prepareLine();
setTimeout(function(){
arr[0].addLine(data,assembly,arr[index]);
},250)
}
}
else if (views[0] == 'table'){
if (index == 0){
arr[0].drawTable('asm-plot-container');
}
else {
setTimeout(function(){
arr[0].addColumn(arr[index]);
},250)
}
}
else {
arr[0].drawPlot('asm-plot-container');
}
});
})
function compare (asm1,asm2){
if (!asm1) return;
if (!asm2) return;
plot_container.append('div').attr('id','assembly_stats_left').append('p').text(assemblies[0]);
plot_container.append('div').attr('id','assembly_stats_right').append('p').text(assemblies[1]);
var span = Math.max(asm1.assembly,asm2.assembly)
var longest = Math.max(asm1.scaffolds[0],asm2.scaffolds[0])
asm1.drawPlot('assembly_stats_left',longest,span);
asm2.drawPlot('assembly_stats_right',longest,span);
}
</script>
</body>
</html>