Topaz training error

[rijuaxt]

Error in image dimension , try dim=2 or 3 .

I was using topaz for training huge dataset. after preprocessing topaz exited with the error in image dimension.
Version: latest one

However, the older version works fine for the same dataset.

[DarnellGranberry]

Can you please post the error message you got, as well as your conda environment?

[rijuaxt]

I will post here soon. I was just wondering if it’s possible to train using the old version and extract with the new Topaz extraction? I already have a trained model, but I couldn’t extract because it showed the 'long list argument' issue.

If so, could you please refer me to the command-line option where I wouldn’t have to introduce all the micrographs with '*'? I would prefer that Topaz be able to read a list of micrographs instead.

[DarnellGranberry]

You can list the argument filenames in a text file and read them with @filenames.txt, as described here.

[DarnellGranberry]

Closing this for now. Let us know if you run into further issues.

[rijuaxt]

[CPU: 298.7 MB Avail: 114.80 GB]
Traceback (most recent call last):
File "cryosparc_master/cryosparc_compute/run.py", line 129, in cryosparc_master.cryosparc_compute.run.main
File "/usr/local/cryosparc/2.0/cryosparc_worker/cryosparc_compute/jobs/topaz/run_topaz.py", line 384, in run_topaz_wrapper_train
utils.run_process(train_command)
File "/usr/local/cryosparc/2.0/cryosparc_worker/cryosparc_compute/jobs/topaz/topaz_utils.py", line 99, in run_process
assert process.returncode == 0, f"Subprocess exited with status {process.returncode} ({str_command})"
AssertionError: Subprocess exited with status 1 (/opt/topaz/conda/0.3.5/bin/topaz train --train-images