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GGBN Mapping - MIXS:0000046 pcr_primers #49

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gdadade opened this issue Mar 9, 2021 · 0 comments
Open

GGBN Mapping - MIXS:0000046 pcr_primers #49

gdadade opened this issue Mar 9, 2021 · 0 comments
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GGBN-MIxS Mapping The issue is about the mapping of a MIxS term to a GGBN term or terms. GGBN-MIxS TG This issue is related to the work of the GGBN-MIxS Task Group

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@gdadade
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gdadade commented Mar 9, 2021

Field Value
subject_id http://data.ggbn.org/schemas/ggbn/terms/primerName
subject_definition Name of primer used for this amplification, cloning, or single read
subject_usage_notes can be used for ABCD implementation; for Darwin Core-Archive implementation please use ggbn:primerNameForward or ggbn:primerNameReverse
subject_examples
predicate_id skos:narrowMatch
object_id MIXS:0000046
object_label pcr_primers
object definition PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters
object source https://github.com/GenomicsStandardsConsortium/mixs-legacy/blob/master/mixs5/mixs_v5.xlsx

or {

Field Value
subject_id http://data.ggbn.org/schemas/ggbn/terms/primerNameForward
subject_definition Name of primer used for this amplification, cloning, or single read
subject_usage_notes only for Darwin Core-Archive implementation! For ABCD implementation please use ggbn:primerName
subject_examples
predicate_id skos:narrowMatch
object_id MIXS:0000046
object_label pcr_primers
object definition PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters
object source https://github.com/GenomicsStandardsConsortium/mixs-legacy/blob/master/mixs5/mixs_v5.xlsx

and

Field Value
subject_id http://data.ggbn.org/schemas/ggbn/terms/primerNameReverse
subject_definition Name of primer used for this amplification, cloning, or single read
subject_usage_notes only for Darwin Core-Archive implementation! For ABCD implementation please use ggbn:primerName
subject_examples
predicate_id skos:narrowMatch
object_id MIXS:0000046
object_label pcr_primers
object definition PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters
object source https://github.com/GenomicsStandardsConsortium/mixs-legacy/blob/master/mixs5/mixs_v5.xlsx

}

and

Field Value
subject_id http://data.ggbn.org/schemas/ggbn/terms/primerSequence
subject_definition DNA sequence of the primer (A,T,G,C; 5' to 3')
subject_usage_notes can be used for ABCD implementation; for Darwin Core-Archive implementation please use ggbn:primerSequenceForward or ggbn:primerSequenceReverse
subject_examples
predicate_id skos:narrowMatch
object_id MIXS:0000046
object_label pcr_primers
object definition PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters
object source https://github.com/GenomicsStandardsConsortium/mixs-legacy/blob/master/mixs5/mixs_v5.xlsx

or {

Field Value
subject_id http://data.ggbn.org/schemas/ggbn/terms/primerSequenceForward
subject_definition DNA sequence of the primer (A,T,G,C; 5' to 3')
subject_usage_notes only for Darwin Core-Archive implementation! For ABCD implementation please use ggbn:primerSequence
subject_examples
predicate_id skos:narrowMatch
object_id MIXS:0000046
object_label pcr_primers
object definition PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters
object source https://github.com/GenomicsStandardsConsortium/mixs-legacy/blob/master/mixs5/mixs_v5.xlsx

and

Field Value
subject_id http://data.ggbn.org/schemas/ggbn/terms/primerSequenceReverse
subject_definition DNA sequence of the primer (A,T,G,C; 5' to 3')
subject_usage_notes only for Darwin Core-Archive implementation! For ABCD implementation please use ggbn:primerSequence
subject_examples
predicate_id skos:narrowMatch
object_id MIXS:0000046
object_label pcr_primers
object definition PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters
object source https://github.com/GenomicsStandardsConsortium/mixs-legacy/blob/master/mixs5/mixs_v5.xlsx

}

@gdadade gdadade added GGBN-MIxS Mapping The issue is about the mapping of a MIxS term to a GGBN term or terms. GGBN-MIxS TG This issue is related to the work of the GGBN-MIxS Task Group labels Mar 9, 2021
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Labels
GGBN-MIxS Mapping The issue is about the mapping of a MIxS term to a GGBN term or terms. GGBN-MIxS TG This issue is related to the work of the GGBN-MIxS Task Group
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