From 4417803ac9d3babbbb61fd4af5fb8cc4ae46222d Mon Sep 17 00:00:00 2001
From: alisterburt <alisterburt@gmail.com>
Date: Wed, 1 Jun 2022 15:02:32 +0100
Subject: [PATCH] tiny refactor

---
 lil_aretomo/aretomo.py | 2 +-
 lil_aretomo/utils.py   | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/lil_aretomo/aretomo.py b/lil_aretomo/aretomo.py
index 44a2176..1b3f869 100644
--- a/lil_aretomo/aretomo.py
+++ b/lil_aretomo/aretomo.py
@@ -65,7 +65,7 @@ def run_aretomo_alignment(
         binning=binning,
         aretomo_executable=aretomo_executable,
         nominal_rotation_angle=nominal_rotation_angle,
-        local_align=local_align,
+        local_alignments=local_align,
         n_patches_xy=n_patches_xy,
         thickness_for_alignment=thickness_for_alignment
     )
diff --git a/lil_aretomo/utils.py b/lil_aretomo/utils.py
index 6f2bf70..a2c3826 100644
--- a/lil_aretomo/utils.py
+++ b/lil_aretomo/utils.py
@@ -31,7 +31,7 @@ def align_tilt_series_aretomo(
         binning: float,
         aretomo_executable: Path,
         nominal_rotation_angle: bool or float,
-        local_align: bool,
+        local_alignments: bool,
         n_patches_xy: tuple[int, int],
         thickness_for_alignment: float
 ):
@@ -54,7 +54,7 @@ def align_tilt_series_aretomo(
         command.append('-TiltAxis')
         command.append(f'{nominal_rotation_angle}')
 
-    if local_align:
+    if local_alignments is True:
         command.append('-Patch')
         command.append(f'{n_patches_xy[0]}')
         command.append(f'{n_patches_xy[1]}')