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ppr_prediction_main.m
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ppr_prediction_main.m
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function ppr_prediction_main(arglist)
global TrainingResults;
global TrainingDataFile;
global OutputFileMat;
global data;
[params, exitCode] = parse_arguments(arglist);
if exitCode == 0
% Read data and training results
[ exitCode] = ppr_io_read_params_json(params.infile);
end
if exitCode == 0
[exitCode, X, y, spotID, strLabel] = ppr_data_format();
end
if exitCode == 0
[exitCode, cr] = ppr_predict(X, y, strLabel, spotID);
end
if exitCode == 0
ppr_io_save_results(cr, TrainingDataFile, X);
end
fprintf('Program finished with error code %d\n', exitCode);
end % END of function pamsoft_grid
function [params, exitCode] = parse_arguments(argline)
exitCode = 0;
params = struct;
if isempty(argline)
exitCode = -1000;
ppr_util_error_message(exitCode);
return
end
argStrIdx = strfind(argline, '--');
argStrValid = regexp(argline, '--infile=.+', 'ONCE');
if isempty(argStrValid)
exitCode = -1000;
ppr_util_error_message(exitCode);
return
end
% @TODO Create regex validation of the parameter passed to ensure the
% code below works with the expected format
nArgs = length(argStrIdx);
for i = 1:nArgs-1
arg = argline(argStrIdx(i)+2:argStrIdx(i+1)-1);
arg = strrep(arg, '-', '');
if contains( arg, '=' )
[argName, argVal] = strtok(arg, '=');
else
[argName, argVal] = strtok(arg, ' ');
end
params.(argName) = strtrim(argVal(2:end));
end
arg = argline(argStrIdx(end)+2:end);
arg = strrep(arg, '-', '');
if contains( arg, '=' )
[argName, argVal] = strtok(arg, '=');
else
[argName, argVal] = strtok(arg, ' ');
end
params.(argName) = strtrim(argVal(2:end));
end