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gfastats container

Main tool : gfastats

Full documentation: https://github.com/vgl-hub/gfastats

The swiss army knife for genome assembly. gfastats is a single fast and exhaustive tool for summary statistics and simultaneous fa (fasta, fastq, gfa [.gz]) genome assembly file manipulation. gfastats also allows seamless fasta<>fastq<>gfa[.gz] conversion.

Example Usage

# from readme
gfastats input.[fasta|fastq|gfa][.gz] [expected genome size] [header[:start-end]]

# sample usage
gfastats  input.gfa --threads 4 --tabular --seq-report