forked from StaPH-B/docker-builds
-
Notifications
You must be signed in to change notification settings - Fork 1
/
panaroo-environment.yml
262 lines (262 loc) · 8.57 KB
/
panaroo-environment.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
name: base
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- perl-file-path=2.18=pl5321hd8ed1ab_0
- perl-file-slurp-tiny=0.004=pl5321hdfd78af_2
- biopython=1.79=py39hb9d737c_2
- tqdm=4.64.0=pyhd8ed1ab_0
- perl-xml-simple=2.25=pl5321hdfd78af_2
- perl-http-daemon=6.14=pl5321hdfd78af_0
- xorg-libxau=1.0.9=h7f98852_0
- kiwisolver=1.4.3=py39hf939315_0
- perl-encode=3.17=pl5321hec16e2b_0
- numba=0.55.2=py39h66db6d7_0
- perl=5.32.1=2_h7f98852_perl5
- perl-file-listing=6.15=pl5321hdfd78af_0
- wheel=0.37.1=pyhd8ed1ab_0
- libbrotlidec=1.0.9=h166bdaf_7
- perl-ipc-run=20200505.0=pl5321hdfd78af_0
- perl-http-message=6.36=pl5321hdfd78af_0
- perl-json-xs=2.34=pl5321h9f5acd7_5
- libuuid=2.32.1=h7f98852_1000
- colorama=0.4.5=pyhd8ed1ab_0
- perl-db_file=1.858=pl5321h166bdaf_0
- brotli-bin=1.0.9=h166bdaf_7
- hmmer=3.3.2=h87f3376_2
- minced=0.4.2=hdfd78af_1
- perl-business-isbn=3.007=pl5321hdfd78af_0
- simplejson=3.17.6=py39hb9d737c_1
- llvm-openmp=8.0.1=hc9558a2_0
- tk=8.6.12=h27826a3_0
- threadpoolctl=3.1.0=pyh8a188c0_0
- libopenblas=0.3.20=pthreads_h78a6416_0
- xorg-libxext=1.3.4=h7f98852_1
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- curl=7.83.1=h2283fc2_0
- lerc=3.0=h9c3ff4c_0
- openjdk=11.0.15=hc6918da_0
- xorg-libxtst=1.2.3=h7f98852_1002
- perl-io-compress=2.106=pl5321h87f3376_0
- perl-xml-namespacesupport=1.12=pl5321hdfd78af_1
- openmp=8.0.1=0
- perl-devel-stacktrace=2.04=pl5321hdfd78af_1
- libdb=6.2.32=h9c3ff4c_0
- perl-net-ssleay=1.74=0
- xorg-libxi=1.7.10=h7f98852_0
- perl-bio-featureio=1.6.905=pl5321hdfd78af_4
- perl-libwww-perl=6.67=pl5321hdfd78af_0
- openjpeg=2.4.0=hb52868f_1
- libedit=3.1.20191231=he28a2e2_2
- python-dateutil=2.8.2=pyhd8ed1ab_0
- networkx=2.8.4=pyhd8ed1ab_0
- argh=0.26.2=pyh9f0ad1d_1002
- libzlib=1.2.12=h166bdaf_1
- libgcc-ng=12.1.0=h8d9b700_16
- _openmp_mutex=4.5=2_gnu
- libffi=3.4.2=h7f98852_5
- krb5=1.19.3=h08a2579_0
- python_abi=3.9=2_cp39
- pthread-stubs=0.4=h36c2ea0_1001
- fonts-conda-ecosystem=1=0
- perl-digest-md5=2.58=pl5321hec16e2b_1
- perl-types-serialiser=1.01=pl5321hdfd78af_0
- perl-io-string=1.08=pl5321hdfd78af_4
- perl-bioperl=1.6.924=6
- zlib=1.2.12=h166bdaf_1
- libllvm11=11.1.0=hf817b99_3
- pip=22.1.2=pyhd8ed1ab_0
- perl-business-isbn-data=20210112.006=pl5321hdfd78af_0
- gettext=0.19.8.1=h73d1719_1008
- perl-list-moreutils-xs=0.430=pl5321hec16e2b_1
- infernal=1.1.4=pl5321hec16e2b_1
- freetype=2.10.4=h0708190_1
- perl-www-robotrules=6.02=pl5321hdfd78af_4
- panaroo=1.2.10=pyhdfd78af_0
- packaging=21.3=pyhd8ed1ab_0
- jpeg=9e=h166bdaf_1
- zstd=1.5.2=h8a70e8d_1
- xorg-libx11=1.7.2=h7f98852_0
- importlib_metadata=4.11.4=hd8ed1ab_0
- perl-xml-dom-xpath=0.14=pl5321hdfd78af_2
- pcre=8.45=h9c3ff4c_0
- xz=5.2.5=h516909a_1
- capnproto=0.9.1=ha19adfc_4
- perl-xml-xpathengine=0.14=pl5321hdfd78af_3
- perl-xml-dom=1.46=pl5321hdfd78af_1
- xorg-xproto=7.0.31=h7f98852_1007
- parallel=20220522=ha770c72_0
- perl-compress-raw-bzip2=2.103=pl5321h87f3376_0
- zipp=3.8.0=pyhd8ed1ab_0
- libidn2=2.3.2=h7f98852_0
- clustalo=1.2.4=h87f3376_5
- llvmlite=0.38.1=py39h7d9a04d_0
- font-ttf-inconsolata=3.000=h77eed37_0
- perl-bioperl-core=1.7.8=pl5321hdfd78af_1
- perl-encode-locale=1.05=pl5321hdfd78af_7
- fontconfig=2.14.0=h8e229c2_0
- libtiff=4.4.0=hc85c160_1
- pillow=9.1.1=py39hae2aec6_1
- perl-xml-sax-expat=0.51=pl5321hdfd78af_4
- tzdata=2022a=h191b570_0
- perl-data-dumper=2.183=pl5321hec16e2b_1
- perl-text-diff=1.45=pl5321hdfd78af_1
- mash=2.3=ha9a2dd8_3
- perl-html-parser=3.78=pl5321h9f5acd7_0
- intbitset=2.4.1=py39hb9d737c_3
- sqlite=3.38.5=h4ff8645_0
- perl-http-cookies=6.10=pl5321hdfd78af_0
- unicodedata2=14.0.0=py39hb9d737c_1
- perl-time-local=1.30=pl5321hdfd78af_0
- perl-capture-tiny=0.48=pl5321ha770c72_1
- perl-io-tty=1.16=pl5321hec16e2b_1
- libglib=2.70.2=h174f98d_4
- cairo=1.16.0=ha61ee94_1011
- ncurses=6.3=h27087fc_1
- libssh2=1.10.0=ha35d2d1_2
- perl-compress-raw-zlib=2.105=pl5321h87f3376_0
- perl-base=2.23=pl5321hdfd78af_2
- pixman=0.40.0=h36c2ea0_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- scipy=1.8.1=py39he49c0e8_0
- xorg-libxrender=0.9.10=h7f98852_1003
- perl-sub-uplevel=0.2800=pl5321hec16e2b_4
- perl-exception-class=1.45=pl5321hdfd78af_0
- keyutils=1.6.1=h166bdaf_0
- perl-ntlm=1.09=pl5321hdfd78af_5
- perl-digest-hmac=1.04=pl5321hdfd78af_0
- graphite2=1.3.13=h58526e2_1001
- perl-json=4.07=pl5321hdfd78af_0
- perl-constant=1.33=pl5321hd8ed1ab_0
- libdeflate=1.12=h166bdaf_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- libgfortran-ng=12.1.0=h69a702a_16
- bedtools=2.30.0=h468198e_3
- lcms2=2.12=hddcbb42_0
- perl-parent=0.238=pl5321hd8ed1ab_0
- c-ares=1.18.1=h7f98852_0
- python-edlib=1.3.9=py39hc16433a_1
- blast=2.12.0=hf3cf87c_4
- perl-http-negotiate=6.01=pl5321hdfd78af_4
- perl-threaded=5.32.1=hdfd78af_1
- libgomp=12.1.0=h8d9b700_16
- perl-tree-dag_node=1.32=pl5321hdfd78af_0
- perl-try-tiny=0.31=pl5321hdfd78af_0
- xorg-libxfixes=5.0.3=h7f98852_1004
- perl-exporter=5.74=pl5321hd8ed1ab_0
- xorg-xextproto=7.3.0=h7f98852_1002
- entrez-direct=16.2=he881be0_1
- barrnap=0.9=hdfd78af_4
- libcups=2.3.3=hf5a7f15_1
- fonts-conda-forge=1=0
- certifi=2022.6.15=py39hf3d152e_0
- perl-file-sort=1.01=pl5321hdfd78af_3
- xorg-recordproto=1.14.2=h7f98852_1002
- argcomplete=2.0.0=pyhd8ed1ab_0
- perl-io-zlib=1.11=pl5321hdfd78af_0
- alsa-lib=1.2.6.1=h7f98852_0
- fonttools=4.33.3=py39hb9d737c_0
- perl-xml-sax-base=1.09=pl5321hdfd78af_1
- libcblas=3.9.0=15_linux64_openblas
- perl-libxml-perl=0.08=pl5321hdfd78af_3
- intel-openmp=2022.0.1=h06a4308_3633
- libgcc=7.2.0=h69d50b8_2
- libunistring=0.9.10=h7f98852_0
- perl-io-html=1.004=pl5321hdfd78af_0
- libev=4.33=h516909a_1
- perl-html-tagset=3.20=pl5321hdfd78af_4
- libblas=3.9.0=15_linux64_openblas
- libnsl=2.0.0=h7f98852_0
- perl-scalar-list-utils=1.62=pl5321hec16e2b_0
- joblib=1.1.0=pyhd8ed1ab_0
- perl-mime-base64=3.16=pl5321hec16e2b_2
- xorg-kbproto=1.0.7=h7f98852_1002
- ca-certificates=2022.6.15=ha878542_0
- perl-pathtools=3.75=pl5321hec16e2b_3
- tenacity=8.0.1=pyhd8ed1ab_0
- xorg-fixesproto=5.0=h7f98852_1002
- bzip2=1.0.8=h7f98852_4
- perl-algorithm-diff=1.201=pl5321hd8ed1ab_0
- prodigal=2.6.3=hec16e2b_4
- xorg-libsm=1.2.3=hd9c2040_1000
- matplotlib-base=3.5.2=py39h700656a_0
- perl-http-date=6.05=pl5321hdfd78af_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- perl-bio-asn1-entrezgene=1.73=pl5321hdfd78af_3
- mafft=7.505=hec16e2b_0
- cycler=0.11.0=pyhd8ed1ab_0
- perl-test-warn=0.36=pl5321hdfd78af_2
- prank=v.170427=h9f5acd7_5
- perl-xml-sax=1.02=pl5321hdfd78af_1
- libstdcxx-ng=12.1.0=ha89aaad_16
- icu=70.1=h27087fc_0
- perl-uri=5.10=pl5321hdfd78af_0
- perl-bio-samtools=1.43=pl5321h7132678_3
- xorg-libice=1.0.10=h7f98852_0
- libbrotlicommon=1.0.9=h166bdaf_7
- aragorn=1.2.41=hec16e2b_0
- libwebp=1.2.2=h3452ae3_0
- perl-test-exception=0.43=pl5321hdfd78af_3
- libbrotlienc=1.0.9=h166bdaf_7
- perl-file-temp=0.2304=pl5321hd8ed1ab_0
- gsl=2.7=he838d99_0
- harfbuzz=4.3.0=hf9f4e7c_0
- readline=8.1.2=h0f457ee_0
- lz4-c=1.9.3=h9c3ff4c_1
- perl-bioperl-run=1.007003=pl5321hdfd78af_0
- wget=1.20.3=ha35d2d1_1
- perl-socket=2.027=pl5321hec16e2b_3
- libpng=1.6.37=h21135ba_2
- perl-extutils-makemaker=7.64=pl5321hd8ed1ab_0
- libidn11=1.34=h1cef754_0
- libcurl=7.83.1=h2283fc2_0
- perl-url-encode=0.03=pl5321h9ee0642_0
- perl-io-socket-ssl=2.074=pl5321hdfd78af_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- prokka=1.13=2
- six=1.16.0=pyh6c4a22f_0
- perl-class-data-inheritable=0.09=pl5321hdfd78af_0
- libnghttp2=1.47.0=he49606f_0
- gffutils=0.11.0=pyh5e36f6f_0
- libiconv=1.16=h516909a_0
- perl-list-moreutils=0.430=pl5321hdfd78af_0
- perl-archive-tar=2.40=pl5321hdfd78af_0
- tbl2asn=25.7=h9ee0642_1
- perl-lwp-mediatypes=6.04=pl5321hdfd78af_1
- mkl=2022.0.1=h06a4308_117
- dendropy=4.5.2=pyh3252c3a_0
- libwebp-base=1.2.2=h7f98852_1
- libgfortran5=12.1.0=hdcd56e2_16
- perl-exporter-tiny=1.002002=pl5321hdfd78af_0
- numpy=1.22.4=py39hc58783e_0
- cd-hit=4.8.1=h5b5514e_6
- expat=2.4.8=h27087fc_0
- xorg-inputproto=2.3.2=h7f98852_1002
- perl-net-http=6.22=pl5321hdfd78af_0
- brotli=1.0.9=h166bdaf_7
- liblapack=3.9.0=15_linux64_openblas
- importlib-metadata=4.11.4=py39hf3d152e_0
- argtable2=2.13=h14c3975_1001
- perl-xml-parser=2.44_01=pl5321hc3e0081_1003
- perl-carp=1.50=pl5321hd8ed1ab_0
- perl-test-differences=0.69=pl5321hdfd78af_0
- perl-test-deep=1.130=pl5321hdfd78af_0
- openssl=3.0.4
- plotly=5.9.0=pyhd8ed1ab_0
- perl-xml-regexp=0.04=pl5321hdfd78af_3
- python=3.9.13=h2660328_0_cpython
- perl-common-sense=3.75=pl5321hdfd78af_0
- _libgcc_mutex=0.1=conda_forge
- scikit-learn=1.1.1=py39h4037b75_0
- perl-test-most=0.37=pl5321hdfd78af_0
- munkres=1.1.4=pyh9f0ad1d_0
- libxcb=1.13=h7f98852_1004
- pyfaidx=0.7.0=pyh5e36f6f_0
- giflib=5.2.1=h36c2ea0_2
- perl-file-spec=3.48_01=pl5321hdfd78af_2
- xorg-renderproto=0.11.1=h7f98852_1002
- font-ttf-ubuntu=0.83=hab24e00_0
- perl-timedate=2.33=pl5321hdfd78af_2
- setuptools=62.6.0=py39hf3d152e_0