From cd32e7497c2962d9d30da6468f04912c2bab2967 Mon Sep 17 00:00:00 2001
From: fraser-combe <frascom@hotmail.com>
Date: Thu, 31 Oct 2024 15:48:17 -0500
Subject: [PATCH] my fav commit mdsums!

---
 tests/workflows/theiacov/test_wf_theiacov_clearlabs.yml   | 4 ++--
 tests/workflows/theiacov/test_wf_theiacov_illumina_pe.yml | 4 ++--
 tests/workflows/theiacov/test_wf_theiacov_illumina_se.yml | 4 ++--
 tests/workflows/theiacov/test_wf_theiacov_ont.yml         | 4 ++--
 4 files changed, 8 insertions(+), 8 deletions(-)

diff --git a/tests/workflows/theiacov/test_wf_theiacov_clearlabs.yml b/tests/workflows/theiacov/test_wf_theiacov_clearlabs.yml
index 0188cc8f2..e42083370 100644
--- a/tests/workflows/theiacov/test_wf_theiacov_clearlabs.yml
+++ b/tests/workflows/theiacov/test_wf_theiacov_clearlabs.yml
@@ -318,7 +318,7 @@
     - path: miniwdl_run/call-pangolin4/work/clearlabs.pangolin_report.csv
       md5sum: 151390c419b00ca44eb83e2bbfb96996
     - path: miniwdl_run/call-stats_n_coverage/command
-      md5sum: 976ccf8be4e09ec5df581c834b5d5792
+      md5sum: 218acd850fc53050a663b1cdc856bdbe
     - path: miniwdl_run/call-stats_n_coverage/inputs.json
       contains: ["bamfile", "samplename"]
     - path: miniwdl_run/call-stats_n_coverage/outputs.json
@@ -350,7 +350,7 @@
     - path: miniwdl_run/call-stats_n_coverage/work/clearlabs.stats.txt
       md5sum: bfed5344c91ce6f4db1f688cac0a3ab9
     - path: miniwdl_run/call-stats_n_coverage_primtrim/command
-      md5sum: 5b211043f0514f94bbfd7a282d50d7c4
+      md5sum: eb5a87024061836b8c244b0cd050bb6c
     - path: miniwdl_run/call-stats_n_coverage_primtrim/inputs.json
       contains: ["bamfile", "samplename"]
     - path: miniwdl_run/call-stats_n_coverage_primtrim/outputs.json
diff --git a/tests/workflows/theiacov/test_wf_theiacov_illumina_pe.yml b/tests/workflows/theiacov/test_wf_theiacov_illumina_pe.yml
index 0feefc993..0d8d12351 100644
--- a/tests/workflows/theiacov/test_wf_theiacov_illumina_pe.yml
+++ b/tests/workflows/theiacov/test_wf_theiacov_illumina_pe.yml
@@ -205,7 +205,7 @@
       md5sum: 511e696afe25f8b96a84d68ec5a8af8a
     # stats n coverage primer trim
     - path: miniwdl_run/call-ivar_consensus/call-stats_n_coverage_primtrim/command
-      md5sum: eb1b72ffa6068223720fe4afd745cdf9
+      md5sum: cd4e1a2a33c10e9513e01c95eb641bdc
     - path: miniwdl_run/call-ivar_consensus/call-stats_n_coverage_primtrim/inputs.json
       contains: ["bamfile", "samplename"]
     - path: miniwdl_run/call-ivar_consensus/call-stats_n_coverage_primtrim/outputs.json
@@ -288,7 +288,7 @@
       md5sum: 6c63395a125f8618334b8af2de4e2d88
     # stats n coverage
     - path: miniwdl_run/call-ivar_consensus/call-stats_n_coverage/command
-      md5sum: 6b32ff212b080a57198d3f1b464bddda
+      md5sum: b4e5c57051c06349d24b01d00d383733
     - path: miniwdl_run/call-ivar_consensus/call-stats_n_coverage/inputs.json
       contains: ["bamfile", "samplename"]
     - path: miniwdl_run/call-ivar_consensus/call-stats_n_coverage/outputs.json
diff --git a/tests/workflows/theiacov/test_wf_theiacov_illumina_se.yml b/tests/workflows/theiacov/test_wf_theiacov_illumina_se.yml
index fb5311a2c..d79e610c7 100644
--- a/tests/workflows/theiacov/test_wf_theiacov_illumina_se.yml
+++ b/tests/workflows/theiacov/test_wf_theiacov_illumina_se.yml
@@ -157,7 +157,7 @@
       md5sum: 603c3cbc771ca910b96d3c032aafe7c9
     # stats n coverage primer trim
     - path: miniwdl_run/call-ivar_consensus/call-stats_n_coverage_primtrim/command
-      md5sum: 4945b2eb1bb9c419cdb6da7e78e7229d
+      md5sum: e9aa93dda1866b935220de3a60a28455
     - path: miniwdl_run/call-ivar_consensus/call-stats_n_coverage_primtrim/inputs.json
       contains: ["bamfile", "samplename"]
     - path: miniwdl_run/call-ivar_consensus/call-stats_n_coverage_primtrim/outputs.json
@@ -240,7 +240,7 @@
       md5sum: 03c5ecf22fdfdb6b240ac3880281a056
     # stats n coverage
     - path: miniwdl_run/call-ivar_consensus/call-stats_n_coverage/command
-      md5sum: 798a1a5da8115c0e3a2f0f7895816e62
+      md5sum: f1c13608d58271a8dcd476f442fc181c
     - path: miniwdl_run/call-ivar_consensus/call-stats_n_coverage/inputs.json
       contains: ["bamfile", "samplename"]
     - path: miniwdl_run/call-ivar_consensus/call-stats_n_coverage/outputs.json
diff --git a/tests/workflows/theiacov/test_wf_theiacov_ont.yml b/tests/workflows/theiacov/test_wf_theiacov_ont.yml
index fd0cd375c..233cd6e4e 100644
--- a/tests/workflows/theiacov/test_wf_theiacov_ont.yml
+++ b/tests/workflows/theiacov/test_wf_theiacov_ont.yml
@@ -232,7 +232,7 @@
       md5sum: 32c0be4fb7f3030bf9c74c0a836d4f2e
     - path: miniwdl_run/call-raw_check_reads/work/_miniwdl_inputs/0/ont.fastq.gz
     - path: miniwdl_run/call-stats_n_coverage/command
-      md5sum: 194a32a05aca8867a2d400465838945d
+      md5sum: 22559ad4e4c2af9c55c563551e95e819
     - path: miniwdl_run/call-stats_n_coverage/inputs.json
       contains: ["bamfile", "samplename"]
     - path: miniwdl_run/call-stats_n_coverage/outputs.json
@@ -257,7 +257,7 @@
     - path: miniwdl_run/call-stats_n_coverage/work/ont.flagstat.txt
     - path: miniwdl_run/call-stats_n_coverage/work/ont.stats.txt
     - path: miniwdl_run/call-stats_n_coverage_primtrim/command
-      md5sum: 7246100df31a6508fe16757463e7c5a2
+      md5sum: ac19abff17f090e6da63cee8b831b212
     - path: miniwdl_run/call-stats_n_coverage_primtrim/inputs.json
       contains: ["bamfile", "samplename"]
     - path: miniwdl_run/call-stats_n_coverage_primtrim/outputs.json