diff --git a/README.md b/README.md index 399cfca..2196388 100644 --- a/README.md +++ b/README.md @@ -2,42 +2,44 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2023-10-22 12:06:00 UTC +2023-10-23 12:06:49 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 499 | 15 | 40 | 100 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290209) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290212) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290229) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290234) | 64cdab | | [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 499 | 15 | 40 | 100 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 259 | 8 | 14 | 35 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) | 1287de | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 260 | 8 | 14 | 35 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) | 1287de | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 260 | 8 | 14 | 35 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6607073831) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6607119954) | c3ced6 | | [theislab/scib](https://github.com/theislab/scib) | 238 | 17 | 27 | 48 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) | ed3e28 | -| [theislab/scgen](https://github.com/theislab/scgen) | 221 | 10 | 18 | 48 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 130 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086700) [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6600425911) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086704) [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086698) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086702) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086701) | 55bcbb | +| [theislab/scgen](https://github.com/theislab/scgen) | 222 | 10 | 18 | 48 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 130 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086700) [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6607022697) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086704) [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086698) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086702) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086701) | 55bcbb | | [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 105 | 6 | 16 | 21 | [![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/6532217835) | 253179 | | [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 99 | 6 | 14 | 14 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/6461737415) | 093ef0 | | [theislab/ncem](https://github.com/theislab/ncem) | 92 | 6 | 23 | 11 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | | [theislab/ncem](https://github.com/theislab/ncem) | 92 | 6 | 23 | 11 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6119220837) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6119220836) | 4137a3 | -| [theislab/moscot](https://github.com/theislab/moscot) | 67 | 4 | 34 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/6456571831) | b23360 | +| [theislab/moscot](https://github.com/theislab/moscot) | 66 | 4 | 34 | 6 | [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/6607080836) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/6607045317) | 91c6f8 | +| [theislab/moscot](https://github.com/theislab/moscot) | 66 | 4 | 34 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/6456571831) | b23360 | | [theislab/destiny](https://github.com/theislab/destiny) | 64 | 5 | 29 | 11 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/3288756982) | 8f083f | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 54 | 5 | 36 | 8 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6577871865) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6577871859) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6577871857) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6577871861) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6577871856) | 00d875 | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 54 | 5 | 36 | 8 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 51 | 5 | 24 | 10 | [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) | \” title=“Revert”Deleted JaxscgenPlot”“\>404835 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 51 | 5 | 24 | 10 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6576225172) | ef8de3 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 51 | 4 | 23 | 10 | [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) | \” title=“Revert”Deleted JaxscgenPlot”“\>404835 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 51 | 4 | 23 | 10 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6604722822) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6604722824) [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6604722825) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6604722829) | 62f8b1 | | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 41 | 7 | 14 | 25 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825767) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825761) | 11ffbb | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Labeler/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3209792663) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3213182368) | e78395 | -| [theislab/spapros](https://github.com/theislab/spapros) | 19 | 3 | 14 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6600880284) | c4c090 | +| [theislab/spapros](https://github.com/theislab/spapros) | 19 | 3 | 14 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6607556150) | c4c090 | | [theislab/spapros](https://github.com/theislab/spapros) | 19 | 3 | 14 | 5 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/6303579093) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/6303579095) | d2f5c6 | | [theislab/geome](https://github.com/theislab/geome) | 13 | 3 | 5 | 4 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 5 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/6461732304) | 8a5b9e | -| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 2 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6527364682) | 677784 | -| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 4 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/6527376440) | bbca9f | +| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 2 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6607087564) | 677784 | +| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 4 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/6607099059) | bbca9f | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 4 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/4510904353) | cb7707 | | [theislab/batch_correction_cellpainting](https://github.com/theislab/batch_correction_cellpainting) | 1 | 1 | 11 | 2 | [![](https://github.com/theislab/batch_correction_cellpainting/workflows/PR%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/6468244415) [![](https://github.com/theislab/batch_correction_cellpainting/workflows/Package%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/6468244416) | 4285a2 | | [theislab/bindome](https://github.com/theislab/bindome) | 1 | 3 | 5 | 1 | [![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) | 3cb12b | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 1 | 0 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369762) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369764) | 96c815 | | [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 0 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6603628470) | c25aa0 | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 0 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6612908683) | eef92d | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/6140914377) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/6140914379) | 1f47f4 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | @@ -46,19 +48,19 @@ GitHub Dashboard | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1174 | 30 | 19 | 424 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1175 | 30 | 19 | 425 | | [theislab/scvelo](https://github.com/theislab/scvelo) | 357 | 15 | 78 | 98 | -| [theislab/scarches](https://github.com/theislab/scarches) | 281 | 14 | 31 | 45 | +| [theislab/scarches](https://github.com/theislab/scarches) | 282 | 14 | 31 | 45 | | [theislab/dca](https://github.com/theislab/dca) | 224 | 11 | 30 | 67 | | [theislab/paga](https://github.com/theislab/paga) | 170 | 10 | 21 | 29 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 169 | 8 | 106 | 22 | | [theislab/kBET](https://github.com/theislab/kBET) | 137 | 9 | 8 | 23 | | [theislab/scCODA](https://github.com/theislab/scCODA) | 120 | 9 | 9 | 21 | | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 110 | 6 | 5 | 9 | -| [theislab/chemCPA](https://github.com/theislab/chemCPA) | 71 | 5 | 8 | 15 | +| [theislab/chemCPA](https://github.com/theislab/chemCPA) | 71 | 5 | 9 | 15 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 52 | 6 | 6 | 8 | | [theislab/trVAE](https://github.com/theislab/trVAE) | 52 | 7 | 2 | 8 | -| [theislab/cpa](https://github.com/theislab/cpa) | 48 | 4 | 8 | 11 | +| [theislab/cpa](https://github.com/theislab/cpa) | 49 | 4 | 8 | 11 | | [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 43 | 6 | 2 | 11 | | [theislab/spatial_scog_workshop_2022](https://github.com/theislab/spatial_scog_workshop_2022) | 41 | 9 | 0 | 24 | | [theislab/pseudodynamics](https://github.com/theislab/pseudodynamics) | 40 | 7 | 0 | 6 | @@ -76,9 +78,9 @@ GitHub Dashboard | [theislab/DeepCollisionalCrossSection](https://github.com/theislab/DeepCollisionalCrossSection) | 12 | 5 | 1 | 6 | | [theislab/multicpa](https://github.com/theislab/multicpa) | 12 | 2 | 0 | 2 | | [theislab/scanpy-in-R](https://github.com/theislab/scanpy-in-R) | 12 | 3 | 1 | 0 | +| [theislab/campa](https://github.com/theislab/campa) | 11 | 4 | 4 | 4 | | [theislab/MetaMap](https://github.com/theislab/MetaMap) | 11 | 7 | 0 | 8 | | [theislab/multigrate](https://github.com/theislab/multigrate) | 11 | 3 | 6 | 3 | -| [theislab/campa](https://github.com/theislab/campa) | 10 | 4 | 4 | 4 | | [theislab/diffxpy_tutorials](https://github.com/theislab/diffxpy_tutorials) | 10 | 8 | 4 | 2 | | [theislab/GWAS-scRNAseq-Integration](https://github.com/theislab/GWAS-scRNAseq-Integration) | 10 | 5 | 0 | 12 | | [theislab/scAnalysisTutorial](https://github.com/theislab/scAnalysisTutorial) | 10 | 3 | 0 | 3 | @@ -158,6 +160,7 @@ GitHub Dashboard | [theislab/moscot-framework_reproducibility](https://github.com/theislab/moscot-framework_reproducibility) | 1 | 2 | 0 | 0 | | [theislab/moscot_benchmarks](https://github.com/theislab/moscot_benchmarks) | 1 | 2 | 1 | 0 | | [theislab/pertpy-datasets](https://github.com/theislab/pertpy-datasets) | 1 | 3 | 0 | 1 | +| [theislab/perturbation-metrics](https://github.com/theislab/perturbation-metrics) | 1 | 2 | 1 | 0 | | [theislab/scPoli_legacy](https://github.com/theislab/scPoli_legacy) | 1 | 5 | 0 | 0 | | [theislab/svaeligr](https://github.com/theislab/svaeligr) | 1 | 2 | 0 | 0 | | [theislab/tissue_reproducibility](https://github.com/theislab/tissue_reproducibility) | 1 | 3 | 0 | 0 | @@ -170,6 +173,7 @@ GitHub Dashboard | [theislab/consensus-clustering-evaluation](https://github.com/theislab/consensus-clustering-evaluation) | 0 | 4 | 0 | 0 | | [theislab/dali](https://github.com/theislab/dali) | 0 | 7 | 0 | 1 | | [theislab/edgepy](https://github.com/theislab/edgepy) | 0 | 3 | 0 | 0 | +| [theislab/ELS_analysis](https://github.com/theislab/ELS_analysis) | 0 | 2 | 0 | 0 | | [theislab/GoBI_single_cell](https://github.com/theislab/GoBI_single_cell) | 0 | 3 | 0 | 0 | | [theislab/hadge-reproducibility](https://github.com/theislab/hadge-reproducibility) | 0 | 1 | 0 | 0 | | [theislab/icml_cbw_2022_clcvae](https://github.com/theislab/icml_cbw_2022_clcvae) | 0 | 2 | 0 | 0 | @@ -180,7 +184,6 @@ GitHub Dashboard | [theislab/multicpa-reproducibility](https://github.com/theislab/multicpa-reproducibility) | 0 | 2 | 0 | 0 | | [theislab/organoid_dexamethason_stimulation](https://github.com/theislab/organoid_dexamethason_stimulation) | 0 | 3 | 0 | 0 | | [theislab/pancreas-targeted_pharmacology](https://github.com/theislab/pancreas-targeted_pharmacology) | 0 | 7 | 0 | 2 | -| [theislab/perturbation-metrics](https://github.com/theislab/perturbation-metrics) | 0 | 2 | 0 | 0 | | [theislab/reproducability_AutoGeneS](https://github.com/theislab/reproducability_AutoGeneS) | 0 | 3 | 0 | 0 | | [theislab/reproducibility_AutoGeneS](https://github.com/theislab/reproducibility_AutoGeneS) | 0 | 3 | 0 | 0 | | [theislab/scanpy.org](https://github.com/theislab/scanpy.org) | 0 | 7 | 1 | 0 | diff --git a/index.html b/index.html index f1b6f65..00d4e52 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

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- - - - - - - - + - + - + - + - + - + - + - + - + - + - + - + diff --git a/repos.csv b/repos.csv index f59f043..8675cca 100644 --- a/repos.csv +++ b/repos.csv @@ -12,6 +12,7 @@ theislab,AutoGeneS,theislab/AutoGeneS,52,6,6,8,FALSE,https://github.com/theislab theislab,Covid_meta_analysis,theislab/Covid_meta_analysis,24,8,2,11,FALSE,https://github.com/theislab/Covid_meta_analysis,24,NA,NA,NA theislab,DeepCollisionalCrossSection,theislab/DeepCollisionalCrossSection,12,5,1,6,FALSE,https://github.com/theislab/DeepCollisionalCrossSection,12,NA,NA,NA theislab,DeepRT,theislab/DeepRT,26,2,11,10,FALSE,https://github.com/theislab/DeepRT,26,NA,NA,NA +theislab,ELS_analysis,theislab/ELS_analysis,0,2,0,0,FALSE,https://github.com/theislab/ELS_analysis,0,NA,NA,NA theislab,GWAS-scRNAseq-Integration,theislab/GWAS-scRNAseq-Integration,10,5,0,12,FALSE,https://github.com/theislab/GWAS-scRNAseq-Integration,10,NA,NA,NA theislab,GoBI_single_cell,theislab/GoBI_single_cell,0,3,0,0,FALSE,https://github.com/theislab/GoBI_single_cell,0,NA,NA,NA theislab,HPA_reproducibility,theislab/HPA_reproducibility,2,3,0,0,FALSE,https://github.com/theislab/HPA_reproducibility,2,NA,NA,NA @@ -56,23 +57,32 @@ theislab,batchglm,theislab/batchglm,26,4,46,9,FALSE,https://github.com/theislab/ Important cookietemple template update 2.1.1 released!",[![](https://github.com/theislab/batchglm/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3213182368) theislab,bindome,theislab/bindome,1,3,5,1,FALSE,https://github.com/theislab/bindome,1,3cb12b5e3c71749003718d8d1768e3b9790d8544,minor fixes,[![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) -theislab,campa,theislab/campa,10,4,4,4,FALSE,https://github.com/theislab/campa,10,NA,NA,NA +theislab,campa,theislab/campa,11,4,4,4,FALSE,https://github.com/theislab/campa,11,NA,NA,NA theislab,campa_ana,theislab/campa_ana,2,4,0,0,FALSE,https://github.com/theislab/campa_ana,2,NA,NA,NA -theislab,cellrank,theislab/cellrank,259,8,14,35,FALSE,https://github.com/theislab/cellrank,259,1287deed96ee4fa49aa50e948688e75c3d173870,Change core development order,[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) +theislab,cellrank,theislab/cellrank,260,8,14,35,FALSE,https://github.com/theislab/cellrank,260,1287deed96ee4fa49aa50e948688e75c3d173870,Change core development order,[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) +theislab,cellrank,theislab/cellrank,260,8,14,35,FALSE,https://github.com/theislab/cellrank,260,c3ced63ead2672f5fce3bf00df2d61c4653eeafa,"Fix/anndata serialization (#1122) + +* Fix AnnData I/O for Lineage, bump version + +* Remove variable + +* Add test + +* Add `zarr` to test reqs",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6607073831) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6607119954) theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,1,0,0,0,FALSE,https://github.com/theislab/cellrank2_reproducibility,1,96c815f78ecbb75d9dc12f0ee995851acf314add,"Add `lint.yml` (#40) Adds CI to check linting on push to `main` or when opeing a PR to merge into `main`.",[![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369762) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369764) -theislab,cellrank_notebooks,theislab/cellrank_notebooks,6,4,2,5,FALSE,https://github.com/theislab/cellrank_notebooks,6,6777840bcc146924d208c0b9b02677da63620805,[ci skip] Fix pepy badge,[![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6527364682) +theislab,cellrank_notebooks,theislab/cellrank_notebooks,6,4,2,5,FALSE,https://github.com/theislab/cellrank_notebooks,6,6777840bcc146924d208c0b9b02677da63620805,[ci skip] Fix pepy badge,[![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6607087564) theislab,cellrank_reproducibility,theislab/cellrank_reproducibility,13,2,0,7,FALSE,https://github.com/theislab/cellrank_reproducibility,13,NA,NA,NA theislab,cellrank_reproducibility_preprint,theislab/cellrank_reproducibility_preprint,4,2,0,0,FALSE,https://github.com/theislab/cellrank_reproducibility_preprint,4,NA,NA,NA -theislab,chemCPA,theislab/chemCPA,71,5,8,15,FALSE,https://github.com/theislab/chemCPA,71,NA,NA,NA +theislab,chemCPA,theislab/chemCPA,71,5,9,15,FALSE,https://github.com/theislab/chemCPA,71,NA,NA,NA theislab,collideseq_reproducibility,theislab/collideseq_reproducibility,0,2,0,0,FALSE,https://github.com/theislab/collideseq_reproducibility,0,NA,NA,NA theislab,consensus-clustering-evaluation,theislab/consensus-clustering-evaluation,0,4,0,0,FALSE,https://github.com/theislab/consensus-clustering-evaluation,0,NA,NA,NA theislab,countae,theislab/countae,1,4,0,0,FALSE,https://github.com/theislab/countae,1,NA,NA,NA theislab,covid-perturbation,theislab/covid-perturbation,3,3,0,0,FALSE,https://github.com/theislab/covid-perturbation,3,NA,NA,NA theislab,covid_macrophages_integration,theislab/covid_macrophages_integration,2,5,0,4,FALSE,https://github.com/theislab/covid_macrophages_integration,2,NA,NA,NA -theislab,cpa,theislab/cpa,48,4,8,11,FALSE,https://github.com/theislab/cpa,48,NA,NA,NA +theislab,cpa,theislab/cpa,49,4,8,11,FALSE,https://github.com/theislab/cpa,49,NA,NA,NA theislab,cpa-reproducibility,theislab/cpa-reproducibility,6,3,0,1,FALSE,https://github.com/theislab/cpa-reproducibility,6,NA,NA,NA theislab,dali,theislab/dali,0,7,0,1,FALSE,https://github.com/theislab/dali,0,NA,NA,NA theislab,dca,theislab/dca,224,11,30,67,FALSE,https://github.com/theislab/dca,224,NA,NA,NA @@ -116,7 +126,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,7,4,0,1,FALSE,http theislab,geome,theislab/geome,13,3,5,4,FALSE,https://github.com/theislab/geome,13,5bf0cd07b2ea7fa224a37f69232542a9e686c5bf,"Merge pull request #31 from theislab/template-update Automated template update from cookiecutter-scverse",[![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) -theislab,gh-dashboard,theislab/gh-dashboard,0,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,0,c25aa076c984c808728442286d0f312993b436fb,[status] 2023-10-21 12:09:15 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6603628470) +theislab,gh-dashboard,theislab/gh-dashboard,0,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,0,eef92d0aca09be4fceb35cf05df21f2652dd4b6a,[status] 2023-10-22 12:07:32 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6612908683) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,greatpy,theislab/greatpy,8,3,3,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA theislab,gut_lineage,theislab/gut_lineage,2,3,0,3,FALSE,https://github.com/theislab/gut_lineage,2,NA,NA,NA @@ -152,7 +162,10 @@ theislab,intercode,theislab/intercode,6,3,1,1,FALSE,https://github.com/theislab/ theislab,ipsc_ipd_analysis,theislab/ipsc_ipd_analysis,0,3,0,0,FALSE,https://github.com/theislab/ipsc_ipd_analysis,0,NA,NA,NA theislab,kBET,theislab/kBET,137,9,8,23,FALSE,https://github.com/theislab/kBET,137,NA,NA,NA theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/kbranches,5,NA,NA,NA -theislab,moscot,theislab/moscot,67,4,34,6,FALSE,https://github.com/theislab/moscot,67,b233601b6aecd7259aaa1a5dba107f2963420614,"Update/lrgw2 (#613) +theislab,moscot,theislab/moscot,66,4,34,6,FALSE,https://github.com/theislab/moscot,66,91c6f813a56654a58cd07e5130943ff566e57738,"Merge pull request #621 from theislab/fix/tag_set_x + +changed tag literal in set_x, y, xy",[![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/6607080836) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/6607045317) +theislab,moscot,theislab/moscot,66,4,34,6,FALSE,https://github.com/theislab/moscot,66,b233601b6aecd7259aaa1a5dba107f2963420614,"Update/lrgw2 (#613) @@ -163,7 +176,7 @@ theislab,moscot_benchmarks,theislab/moscot_benchmarks,1,2,1,0,FALSE,https://gith theislab,moscot_not,theislab/moscot_not,2,2,8,0,FALSE,https://github.com/theislab/moscot_not,2,NA,NA,NA theislab,moscot_notebooks,theislab/moscot_notebooks,6,1,4,2,FALSE,https://github.com/theislab/moscot_notebooks,6,bbca9f2b0243c4349e0cdd98c78af083251cfe9c,"Merge pull request #58 from theislab/fix/func_calls -small fixes for warnings and function calls",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/6527376440) +small fixes for warnings and function calls",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/6607099059) theislab,moslin,theislab/moslin,9,1,0,1,FALSE,https://github.com/theislab/moslin,9,NA,NA,NA theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,6,2,0,2,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,6,NA,NA,NA theislab,mubind,theislab/mubind,18,2,30,0,FALSE,https://github.com/theislab/mubind,18,NA,NA,NA @@ -184,15 +197,23 @@ theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimul theislab,paga,theislab/paga,170,10,21,29,FALSE,https://github.com/theislab/paga,170,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,7,0,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,3,3,0,5,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,3,NA,NA,NA -theislab,pertpy,theislab/pertpy,51,5,24,10,FALSE,https://github.com/theislab/pertpy,51,404835c82f9a3d943b85973c10130303d090839d,"Revert ""Deleted JaxscgenPlot"" +theislab,pertpy,theislab/pertpy,51,4,23,10,FALSE,https://github.com/theislab/pertpy,51,404835c82f9a3d943b85973c10130303d090839d,"Revert ""Deleted JaxscgenPlot"" This reverts commit 161fc137c5a23320a5799a22cd4d7212b550bca9.",[![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) -theislab,pertpy,theislab/pertpy,51,5,24,10,FALSE,https://github.com/theislab/pertpy,51,ef8de38c46d06bc36379cb9a52a867591afcf4d0,"Merge pull request #396 from theislab/fix/numpy_random +theislab,pertpy,theislab/pertpy,51,4,23,10,FALSE,https://github.com/theislab/pertpy,51,62f8b14f6cc8decbc3bb9a741e11517fea6b8167,"Small bug fixes and docs improvements (#409) -Move to new numpy.random.Generator",[![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6576225172) +* Small bug fixes and docs improvements: Changed pt.pl.dl.pairplot to a static method, fixed error messages in substract and add methods of PerturbationSpace, added docs parameter description for DBSCANSpace.compute and PseudobulkSpace.compute, added docs explanations for all parameters for pt.pl.scg.reg_mean_plot and pt.pl.scg.reg_var_plot + +* [pre-commit.ci] auto fixes from pre-commit.com hooks + +for more information, see https://pre-commit.ci + +--------- + +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6604722822) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6604722824) [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6604722825) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6604722829) theislab,pertpy-datasets,theislab/pertpy-datasets,1,3,0,1,FALSE,https://github.com/theislab/pertpy-datasets,1,NA,NA,NA theislab,pertpy-tutorials,theislab/pertpy-tutorials,4,4,3,6,FALSE,https://github.com/theislab/pertpy-tutorials,4,NA,NA,NA -theislab,perturbation-metrics,theislab/perturbation-metrics,0,2,0,0,FALSE,https://github.com/theislab/perturbation-metrics,0,NA,NA,NA +theislab,perturbation-metrics,theislab/perturbation-metrics,1,2,1,0,FALSE,https://github.com/theislab/perturbation-metrics,1,NA,NA,NA theislab,pseudodynamics,theislab/pseudodynamics,40,7,0,6,FALSE,https://github.com/theislab/pseudodynamics,40,NA,NA,NA theislab,reproducability_AutoGeneS,theislab/reproducability_AutoGeneS,0,3,0,0,FALSE,https://github.com/theislab/reproducability_AutoGeneS,0,NA,NA,NA theislab,reproducibility_AutoGeneS,theislab/reproducibility_AutoGeneS,0,3,0,0,FALSE,https://github.com/theislab/reproducibility_AutoGeneS,0,NA,NA,NA @@ -216,17 +237,17 @@ theislab,scanpy_squidpy_demo_2021,theislab/scanpy_squidpy_demo_2021,2,4,0,0,FALS theislab,scanpydoc,theislab/scanpydoc,12,6,3,5,FALSE,https://github.com/theislab/scanpydoc,12,8a5b9e6dd0d839c302a153333d97208ffb12f47a,"[pre-commit.ci] pre-commit autoupdate (#97) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/6461732304) -theislab,scarches,theislab/scarches,281,14,31,45,FALSE,https://github.com/theislab/scarches,281,NA,NA,NA +theislab,scarches,theislab/scarches,282,14,31,45,FALSE,https://github.com/theislab/scarches,282,NA,NA,NA theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,5,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,5,NA,NA,NA -theislab,scgen,theislab/scgen,221,10,18,48,FALSE,https://github.com/theislab/scgen,221,d79e1f04233c30f9a4eb5b8d57718127909807d7,Merge pull request #87 from theislab/batch_corr_labels,[![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) +theislab,scgen,theislab/scgen,222,10,18,48,FALSE,https://github.com/theislab/scgen,222,d79e1f04233c30f9a4eb5b8d57718127909807d7,Merge pull request #87 from theislab/batch_corr_labels,[![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) theislab,scgen-reproducibility,theislab/scgen-reproducibility,17,4,5,8,FALSE,https://github.com/theislab/scgen-reproducibility,17,NA,NA,NA theislab,scib,theislab/scib,238,17,27,48,FALSE,https://github.com/theislab/scib,NA,ed3e2846414ca1e3dc07552c0eef1e68d82230d4,Bump version: 1.1.3 → 1.1.4,[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) theislab,scib-pipeline,theislab/scib-pipeline,41,7,14,25,FALSE,https://github.com/theislab/scib-pipeline,41,1180bcb35829d6d2984202268b4d1d11c511e20c,Merge branch 'fix/igraph_dependency' into rpy2_unpin,[![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) theislab,scib-reproducibility,theislab/scib-reproducibility,43,6,2,11,FALSE,https://github.com/theislab/scib-reproducibility,43,NA,NA,NA theislab,scvelo,theislab/scvelo,357,15,78,98,FALSE,https://github.com/theislab/scvelo,357,NA,NA,NA theislab,scvelo_notebooks,theislab/scvelo_notebooks,23,2,2,12,FALSE,https://github.com/theislab/scvelo_notebooks,23,NA,NA,NA -theislab,sfaira,theislab/sfaira,130,8,166,13,FALSE,https://github.com/theislab/sfaira,130,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086700) [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6600425911) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086704) [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086698) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086702) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086701) +theislab,sfaira,theislab/sfaira,130,8,166,13,FALSE,https://github.com/theislab/sfaira,130,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086700) [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6607022697) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086704) [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086698) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086702) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086701) theislab,sfaira-portal,theislab/sfaira-portal,0,4,2,0,FALSE,https://github.com/theislab/sfaira-portal,0,NA,NA,NA theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theislab/sfaira-site,0,NA,NA,NA theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA @@ -347,11 +368,11 @@ Signed-off-by: zethson Co-authored-by: xlancelottx Co-authored-by: zethson Co-authored-by: Anna Schaar ",[![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1174,30,19,424,FALSE,https://github.com/theislab/single-cell-tutorial,1174,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1175,30,19,425,FALSE,https://github.com/theislab/single-cell-tutorial,1175,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,3,4,4,3,FALSE,https://github.com/theislab/singlecell_proteomics,3,NA,NA,NA theislab,spapros,theislab/spapros,19,3,14,5,FALSE,https://github.com/theislab/spapros,19,c4c0903758ecb1acd0e16c1d227e59e8be1e28de,"Merge pull request #288 from theislab/development -Mention python package in docs",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6600880284) +Mention python package in docs",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6607556150) theislab,spapros,theislab/spapros,19,3,14,5,FALSE,https://github.com/theislab/spapros,19,d2f5c628c6cff3ae8168650e1cbbca846d40824b,"[DEPENDABOT]: Bump actions/checkout from 3.0.2 to 4.1.0 Bumps [actions/checkout](https://github.com/actions/checkout) from 3.0.2 to 4.1.0.
theislab/cellrank259260 8 14 35 1287de
theislab/cellrank26081435 +c3ced6
theislab/scib 238 17 ed3e28
theislab/scgen221222 10 18 48 d79e1f
theislab/sfaira 130 8 166 13 - + 55bcbb
theislab/zellkonverter 105 6 253179
theislab/anndata2ri 99 6 093ef0
theislab/ncem 92 6 216fd5
theislab/ncem 92 6 4137a3
theislab/moscot664346 +91c6f8
theislab/moscot6766 4 34 6
theislab/pertpy 51524423 10 <a href=“https://github.com/theislab/pertpy/commit/404835c82f9a3d943b85973c10130303d090839d” @@ -224,11 +244,14 @@

GitHub Dashboard

theislab/pertpy 51524423 10ef8de3 + + +62f8b1
theislab/scib-pipeline 14 5 - c4c090
4 2 5 677784
1 4 2 bbca9f
2 0 0c25aa0eef92d
theislab/idtrack
theislab/single-cell-tutorial11741175 30 19424425
theislab/scvelo
theislab/scarches281282 14 31 45 theislab/chemCPA 71 589 15
theislab/cpa4849 4 8 11 0
theislab/campa11444
theislab/MetaMap 11 7 0 8
theislab/multigrate 11 3 6 3
theislab/campa10444
theislab/diffxpy_tutorials 10 1
theislab/perturbation-metrics1210
theislab/scPoli_legacy 1 5 0 0
theislab/svaeligr 1 2 0 0
theislab/tissue_reproducibility 1 3 0 0
theislab/zebrafish_bipolarity 1 4 0 1
theislab/2020_Inhibition_LTbetaR-signalling 0 4 0 3
theislab/2022_Bakhti_pancreas_Syt13 0 3 0 0
theislab/archmap_admin 0 3 0 0
theislab/atlas-feature-selection-benchmark 0 2 3 0
theislab/collideseq_reproducibility 0 2 0 0
theislab/consensus-clustering-evaluation 0 4 0 0
theislab/dali 0 7 0 1
theislab/edgepy 0 3 0 0
theislab/ELS_analysis0200
theislab/GoBI_single_cell 0 2
theislab/perturbation-metrics0200
theislab/reproducability_AutoGeneS 0 3 0 0
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theislab/sc_ketamine_analysis 0 4 0 0
theislab/sfaira-portal 0 4 2 0
theislab/sfaira-site 0 4 0 0
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theislab/sfaira_extension 0 3 1 0
theislab/spapros-smk 0 2 0 1
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theislab/tissue 0 2