diff --git a/README.md b/README.md index 1886ee2..1cd1ec0 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2023-10-09 12:05:20 UTC +2023-10-10 12:06:14 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| @@ -10,37 +10,36 @@ GitHub Dashboard | [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 493 | 15 | 44 | 96 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | | [theislab/cellrank](https://github.com/theislab/cellrank) | 257 | 8 | 10 | 34 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) | 1287de | | [theislab/cellrank](https://github.com/theislab/cellrank) | 257 | 8 | 10 | 34 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6450832910) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6450878339) | c3ced6 | -| [theislab/scib](https://github.com/theislab/scib) | 236 | 17 | 27 | 48 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) | ed3e28 | +| [theislab/scib](https://github.com/theislab/scib) | 237 | 17 | 27 | 48 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) | ed3e28 | | [theislab/scgen](https://github.com/theislab/scgen) | 217 | 10 | 18 | 48 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | | [theislab/sfaira](https://github.com/theislab/sfaira) | 130 | 8 | 177 | 14 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665642) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665653) [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665648) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665649) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665641) | 55e110 | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 130 | 8 | 177 | 14 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6450785718) | c50240 | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 130 | 8 | 177 | 14 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6462962734) | c50240 | | [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 102 | 6 | 15 | 21 | [![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/6381921739) | 617f7f | -| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 99 | 6 | 15 | 14 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/6393559960) | 3411d4 | +| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 99 | 6 | 15 | 14 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/6461737415) | 093ef0 | | [theislab/ncem](https://github.com/theislab/ncem) | 92 | 6 | 23 | 11 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | | [theislab/ncem](https://github.com/theislab/ncem) | 92 | 6 | 23 | 11 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6119220837) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6119220836) | 4137a3 | -| [theislab/moscot](https://github.com/theislab/moscot) | 67 | 4 | 40 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/5787079842) | 4ffcf1 | -| [theislab/moscot](https://github.com/theislab/moscot) | 67 | 4 | 40 | 6 | [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/6456325855) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/6456325879) | b23360 | +| [theislab/moscot](https://github.com/theislab/moscot) | 67 | 4 | 37 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/6456571831) | b23360 | | [theislab/destiny](https://github.com/theislab/destiny) | 64 | 5 | 29 | 11 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/3288756982) | 8f083f | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 53 | 5 | 36 | 7 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 53 | 5 | 36 | 7 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6272566576) | ec54de | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 50 | 5 | 27 | 10 | [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) | \” title=“Revert”Deleted JaxscgenPlot”“\>404835 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 50 | 5 | 27 | 10 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6416606738) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6416606734) [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6416606732) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6416606735) | b58f7f | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 53 | 5 | 38 | 8 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 53 | 5 | 38 | 8 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6272566576) | ec54de | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 50 | 5 | 28 | 10 | [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) | \” title=“Revert”Deleted JaxscgenPlot”“\>404835 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 50 | 5 | 28 | 10 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6416606738) | b58f7f | | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 40 | 7 | 14 | 25 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825767) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825761) | 11ffbb | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Labeler/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3209792663) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3213182368) | e78395 | -| [theislab/spapros](https://github.com/theislab/spapros) | 19 | 3 | 14 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6451277191) | c4c090 | +| [theislab/spapros](https://github.com/theislab/spapros) | 19 | 3 | 14 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6463545821) | c4c090 | | [theislab/spapros](https://github.com/theislab/spapros) | 19 | 3 | 14 | 5 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/6303579093) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/6303579095) | d2f5c6 | -| [theislab/geome](https://github.com/theislab/geome) | 12 | 3 | 5 | 4 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | -| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 5 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/6393549057) | ab5976 | +| [theislab/geome](https://github.com/theislab/geome) | 13 | 3 | 5 | 4 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | +| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 5 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/6461732304) | 8a5b9e | | [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 2 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6450846110) | 677784 | | [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 4 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/6450858251) | bbca9f | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 4 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/4510904353) | cb7707 | -| [theislab/batch_correction_cellpainting](https://github.com/theislab/batch_correction_cellpainting) | 1 | 1 | 11 | 1 | [![](https://github.com/theislab/batch_correction_cellpainting/workflows/PR%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/6266253701) [![](https://github.com/theislab/batch_correction_cellpainting/workflows/Package%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/6266253710) | 09f9e6 | +| [theislab/batch_correction_cellpainting](https://github.com/theislab/batch_correction_cellpainting) | 1 | 1 | 11 | 1 | [![](https://github.com/theislab/batch_correction_cellpainting/workflows/PR%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/6468244415) [![](https://github.com/theislab/batch_correction_cellpainting/workflows/Package%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/6468244416) | 4285a2 | | [theislab/bindome](https://github.com/theislab/bindome) | 1 | 3 | 5 | 1 | [![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) | 3cb12b | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 1 | 0 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369762) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369764) | 96c815 | | [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 0 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6456310608) | 386aec | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 0 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6468964430) | a0cd24 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/6140914377) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/6140914379) | 1f47f4 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | @@ -49,9 +48,9 @@ GitHub Dashboard | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1163 | 30 | 20 | 421 | -| [theislab/scvelo](https://github.com/theislab/scvelo) | 357 | 15 | 75 | 96 | -| [theislab/scarches](https://github.com/theislab/scarches) | 278 | 14 | 29 | 45 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1165 | 30 | 20 | 421 | +| [theislab/scvelo](https://github.com/theislab/scvelo) | 357 | 15 | 76 | 96 | +| [theislab/scarches](https://github.com/theislab/scarches) | 280 | 14 | 29 | 45 | | [theislab/dca](https://github.com/theislab/dca) | 224 | 11 | 30 | 67 | | [theislab/paga](https://github.com/theislab/paga) | 169 | 10 | 21 | 29 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 168 | 8 | 105 | 22 | @@ -61,13 +60,13 @@ GitHub Dashboard | [theislab/chemCPA](https://github.com/theislab/chemCPA) | 70 | 5 | 8 | 15 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 51 | 6 | 6 | 8 | | [theislab/trVAE](https://github.com/theislab/trVAE) | 51 | 7 | 2 | 8 | -| [theislab/cpa](https://github.com/theislab/cpa) | 46 | 4 | 7 | 10 | +| [theislab/cpa](https://github.com/theislab/cpa) | 47 | 4 | 7 | 10 | | [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 42 | 6 | 2 | 11 | | [theislab/spatial_scog_workshop_2022](https://github.com/theislab/spatial_scog_workshop_2022) | 41 | 9 | 0 | 24 | | [theislab/pseudodynamics](https://github.com/theislab/pseudodynamics) | 40 | 7 | 0 | 6 | | [theislab/tcellmatch](https://github.com/theislab/tcellmatch) | 36 | 9 | 3 | 7 | | [theislab/deepflow](https://github.com/theislab/deepflow) | 28 | 5 | 1 | 14 | -| [theislab/scArches-reproducibility](https://github.com/theislab/scArches-reproducibility) | 27 | 5 | 5 | 2 | +| [theislab/scArches-reproducibility](https://github.com/theislab/scArches-reproducibility) | 28 | 5 | 5 | 2 | | [theislab/DeepRT](https://github.com/theislab/DeepRT) | 26 | 2 | 11 | 10 | | [theislab/graph_abstraction](https://github.com/theislab/graph_abstraction) | 26 | 8 | 0 | 10 | | [theislab/Covid_meta_analysis](https://github.com/theislab/Covid_meta_analysis) | 24 | 8 | 2 | 11 | @@ -108,6 +107,7 @@ GitHub Dashboard | [theislab/IMPA](https://github.com/theislab/IMPA) | 6 | 1 | 0 | 1 | | [theislab/intercode](https://github.com/theislab/intercode) | 6 | 3 | 1 | 1 | | [theislab/scCODA_reproducibility](https://github.com/theislab/scCODA_reproducibility) | 6 | 5 | 0 | 1 | +| [theislab/scPoli_reproduce](https://github.com/theislab/scPoli_reproduce) | 6 | 3 | 1 | 3 | | [theislab/sfaira_tutorials](https://github.com/theislab/sfaira_tutorials) | 6 | 4 | 3 | 2 | | [theislab/trVAE_reproducibility](https://github.com/theislab/trVAE_reproducibility) | 6 | 3 | 2 | 4 | | [theislab/2018_Angelidis](https://github.com/theislab/2018_Angelidis) | 5 | 5 | 0 | 5 | @@ -118,9 +118,8 @@ GitHub Dashboard | [theislab/sc-best-practices-ce](https://github.com/theislab/sc-best-practices-ce) | 5 | 7 | 2 | 3 | | [theislab/scanpy-demo-czbiohub](https://github.com/theislab/scanpy-demo-czbiohub) | 5 | 5 | 0 | 4 | | [theislab/scatac_poisson_reproducibility](https://github.com/theislab/scatac_poisson_reproducibility) | 5 | 3 | 0 | 0 | -| [theislab/scPoli_reproduce](https://github.com/theislab/scPoli_reproduce) | 5 | 3 | 1 | 2 | | [theislab/cellrank_reproducibility_preprint](https://github.com/theislab/cellrank_reproducibility_preprint) | 4 | 2 | 0 | 0 | -| [theislab/ehrapy-tutorials](https://github.com/theislab/ehrapy-tutorials) | 4 | 2 | 2 | 2 | +| [theislab/ehrapy-tutorials](https://github.com/theislab/ehrapy-tutorials) | 4 | 2 | 3 | 2 | | [theislab/extended-single-cell-best-practices-container](https://github.com/theislab/extended-single-cell-best-practices-container) | 4 | 4 | 2 | 1 | | [theislab/feature-attribution-sc](https://github.com/theislab/feature-attribution-sc) | 4 | 2 | 8 | 1 | | [theislab/LODE](https://github.com/theislab/LODE) | 4 | 2 | 9 | 0 | diff --git a/index.html b/index.html index 451d624..2d716e6 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

GitHub Dashboard


-2023-10-09 12:07:21 UTC

+2023-10-10 12:07:47 UTC

@@ -111,7 +111,7 @@

GitHub Dashboard

- + @@ -146,7 +146,7 @@

GitHub Dashboard

- + @@ -164,8 +164,8 @@

GitHub Dashboard

- - + + @@ -190,22 +190,12 @@

GitHub Dashboard

- - - - - - - - - - + - + - + @@ -214,47 +204,44 @@

GitHub Dashboard

- + - - + + - + - - + + - + - + - + - + - + - + @@ -263,7 +250,7 @@

GitHub Dashboard

- + @@ -273,7 +260,7 @@

GitHub Dashboard

- + @@ -283,7 +270,7 @@

GitHub Dashboard

- + @@ -292,17 +279,17 @@

GitHub Dashboard

- + + - + @@ -312,25 +299,25 @@

GitHub Dashboard

- + - + - + - - + + - + @@ -339,7 +326,7 @@

GitHub Dashboard

- + @@ -348,7 +335,7 @@

GitHub Dashboard

- + @@ -357,17 +344,17 @@

GitHub Dashboard

- + - - + + - + @@ -377,7 +364,7 @@

GitHub Dashboard

- + @@ -387,7 +374,7 @@

GitHub Dashboard

- + @@ -397,16 +384,16 @@

GitHub Dashboard

- + - - + + - + @@ -415,7 +402,7 @@

GitHub Dashboard

- + @@ -425,7 +412,7 @@

GitHub Dashboard

- + @@ -457,7 +444,7 @@

Repos without Github Actions

- + @@ -466,12 +453,12 @@

Repos without Github Actions

- + - + @@ -541,7 +528,7 @@

Repos without Github Actions

- + @@ -583,7 +570,7 @@

Repos without Github Actions

- + @@ -869,82 +856,82 @@

Repos without Github Actions

+ + + + + + + - + - + - + - + - + - + - + - + - + - - - - - - - @@ -956,7 +943,7 @@

Repos without Github Actions

- + diff --git a/repos.csv b/repos.csv index 5767989..61af153 100644 --- a/repos.csv +++ b/repos.csv @@ -25,9 +25,9 @@ theislab,MRGR_stress_analysis,theislab/MRGR_stress_analysis,0,3,0,0,FALSE,https: theislab,MetaMap,theislab/MetaMap,11,7,0,8,FALSE,https://github.com/theislab/MetaMap,11,NA,NA,NA theislab,MetaMap-web,theislab/MetaMap-web,0,4,2,0,FALSE,https://github.com/theislab/MetaMap-web,0,NA,NA,NA theislab,PathReg,theislab/PathReg,8,3,0,0,FALSE,https://github.com/theislab/PathReg,8,NA,NA,NA -theislab,anndata2ri,theislab/anndata2ri,99,6,15,14,FALSE,https://github.com/theislab/anndata2ri,99,3411d4c054df68d797292c615f044615434d94e0,"[pre-commit.ci] pre-commit autoupdate (#135) +theislab,anndata2ri,theislab/anndata2ri,99,6,15,14,FALSE,https://github.com/theislab/anndata2ri,99,093ef078a1e08f6b7b029be3dad273ab59e9d275,"[pre-commit.ci] pre-commit autoupdate (#137) -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/6393559960) +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/6461737415) theislab,archmap_admin,theislab/archmap_admin,0,3,0,0,FALSE,https://github.com/theislab/archmap_admin,0,NA,NA,NA theislab,astrocytes_reprogramming_analysis,theislab/astrocytes_reprogramming_analysis,0,5,0,0,FALSE,https://github.com/theislab/astrocytes_reprogramming_analysis,0,NA,NA,NA theislab,atlas-feature-selection-benchmark,theislab/atlas-feature-selection-benchmark,0,2,3,0,FALSE,https://github.com/theislab/atlas-feature-selection-benchmark,0,NA,NA,NA @@ -35,7 +35,7 @@ theislab,augurpy,theislab/augurpy,2,2,10,0,FALSE,https://github.com/theislab/aug theislab,autoencoderPS,theislab/autoencoderPS,1,3,0,2,FALSE,https://github.com/theislab/autoencoderPS,1,NA,NA,NA theislab,bartSeq,theislab/bartSeq,1,5,1,5,FALSE,https://github.com/theislab/bartSeq,1,NA,NA,NA theislab,bartseq-pipeline,theislab/bartseq-pipeline,2,4,0,3,FALSE,https://github.com/theislab/bartseq-pipeline,2,NA,NA,NA -theislab,batch_correction_cellpainting,theislab/batch_correction_cellpainting,1,1,11,1,FALSE,https://github.com/theislab/batch_correction_cellpainting,1,09f9e68225313034700eaf4defaed9bac3dd689a,Rxrx19b_pull_request (#46),[![](https://github.com/theislab/batch_correction_cellpainting/workflows/PR%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/6266253701) [![](https://github.com/theislab/batch_correction_cellpainting/workflows/Package%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/6266253710) +theislab,batch_correction_cellpainting,theislab/batch_correction_cellpainting,1,1,11,1,FALSE,https://github.com/theislab/batch_correction_cellpainting,1,4285a2a99a6d763b20d1cecd154bd3194dc031ea,Add gaush(AN)VI code and notebooks,[![](https://github.com/theislab/batch_correction_cellpainting/workflows/PR%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/6468244415) [![](https://github.com/theislab/batch_correction_cellpainting/workflows/Package%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/6468244416) theislab,batchglm,theislab/batchglm,26,4,46,9,FALSE,https://github.com/theislab/batchglm,26,11ffbbd5bd63dde1db9adc3b7c78a90d978fa1a6,"[DEPENDABOT]: Bump dask from 2021.3.0 to 2023.3.0 in /docs Bumps [dask](https://github.com/dask/dask) from 2021.3.0 to 2023.3.0. @@ -81,7 +81,7 @@ theislab,consensus-clustering-evaluation,theislab/consensus-clustering-evaluatio theislab,countae,theislab/countae,1,4,0,0,FALSE,https://github.com/theislab/countae,1,NA,NA,NA theislab,covid-perturbation,theislab/covid-perturbation,3,3,0,0,FALSE,https://github.com/theislab/covid-perturbation,3,NA,NA,NA theislab,covid_macrophages_integration,theislab/covid_macrophages_integration,2,5,0,4,FALSE,https://github.com/theislab/covid_macrophages_integration,2,NA,NA,NA -theislab,cpa,theislab/cpa,46,4,7,10,FALSE,https://github.com/theislab/cpa,46,NA,NA,NA +theislab,cpa,theislab/cpa,47,4,7,10,FALSE,https://github.com/theislab/cpa,47,NA,NA,NA theislab,cpa-reproducibility,theislab/cpa-reproducibility,6,3,0,0,FALSE,https://github.com/theislab/cpa-reproducibility,6,NA,NA,NA theislab,dali,theislab/dali,0,7,0,1,FALSE,https://github.com/theislab/dali,0,NA,NA,NA theislab,dca,theislab/dca,224,11,30,67,FALSE,https://github.com/theislab/dca,224,NA,NA,NA @@ -91,10 +91,10 @@ theislab,diffxpy,theislab/diffxpy,168,8,105,22,FALSE,https://github.com/theislab theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA theislab,disent,theislab/disent,5,3,0,0,FALSE,https://github.com/theislab/disent,5,NA,NA,NA theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA -theislab,ehrapy,theislab/ehrapy,53,5,36,7,FALSE,https://github.com/theislab/ehrapy,53,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows +theislab,ehrapy,theislab/ehrapy,53,5,38,8,FALSE,https://github.com/theislab/ehrapy,53,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) -theislab,ehrapy,theislab/ehrapy,53,5,36,7,FALSE,https://github.com/theislab/ehrapy,53,ec54deddbe0bc5b2f8f7d1cb15fac8c2709124ee,"[pre-commit.ci] pre-commit autoupdate (#592) +theislab,ehrapy,theislab/ehrapy,53,5,38,8,FALSE,https://github.com/theislab/ehrapy,53,ec54deddbe0bc5b2f8f7d1cb15fac8c2709124ee,"[pre-commit.ci] pre-commit autoupdate (#592) updates: - [github.com/psf/black: 23.7.0 → 23.9.1](https://github.com/psf/black/compare/23.7.0...23.9.1) @@ -104,7 +104,7 @@ Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.gi theislab,ehrapy-cli,theislab/ehrapy-cli,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-cli,1,NA,NA,NA theislab,ehrapy-datasets,theislab/ehrapy-datasets,4,2,0,2,FALSE,https://github.com/theislab/ehrapy-datasets,4,cb7707afc4523a317cfb30c1d101091adfaa44cd,Add mimic-2 to CI,[![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/4510904353) theislab,ehrapy-site,theislab/ehrapy-site,1,2,0,0,FALSE,https://github.com/theislab/ehrapy-site,1,NA,NA,NA -theislab,ehrapy-tutorials,theislab/ehrapy-tutorials,4,2,2,2,FALSE,https://github.com/theislab/ehrapy-tutorials,4,NA,NA,NA +theislab,ehrapy-tutorials,theislab/ehrapy-tutorials,4,2,3,2,FALSE,https://github.com/theislab/ehrapy-tutorials,4,NA,NA,NA theislab,enrichment_analysis_celltype,theislab/enrichment_analysis_celltype,9,5,0,4,FALSE,https://github.com/theislab/enrichment_analysis_celltype,9,NA,NA,NA theislab,epicardiods_analysis,theislab/epicardiods_analysis,2,2,1,0,FALSE,https://github.com/theislab/epicardiods_analysis,2,NA,NA,NA theislab,expiMap_reproducibility,theislab/expiMap_reproducibility,8,5,3,4,FALSE,https://github.com/theislab/expiMap_reproducibility,8,NA,NA,NA @@ -112,10 +112,10 @@ theislab,extended-single-cell-best-practices-container,theislab/extended-single- theislab,feature-attribution-sc,theislab/feature-attribution-sc,4,2,8,1,FALSE,https://github.com/theislab/feature-attribution-sc,4,NA,NA,NA theislab,flexible_priors,theislab/flexible_priors,2,2,0,0,FALSE,https://github.com/theislab/flexible_priors,2,NA,NA,NA theislab,gastrulation_analysis,theislab/gastrulation_analysis,7,4,0,1,FALSE,https://github.com/theislab/gastrulation_analysis,7,NA,NA,NA -theislab,geome,theislab/geome,12,3,5,4,FALSE,https://github.com/theislab/geome,12,5bf0cd07b2ea7fa224a37f69232542a9e686c5bf,"Merge pull request #31 from theislab/template-update +theislab,geome,theislab/geome,13,3,5,4,FALSE,https://github.com/theislab/geome,13,5bf0cd07b2ea7fa224a37f69232542a9e686c5bf,"Merge pull request #31 from theislab/template-update Automated template update from cookiecutter-scverse",[![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) -theislab,gh-dashboard,theislab/gh-dashboard,0,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,0,386aec549ace94ea8fe2b88d69b617d571034d2f,[status] 2023-10-08 12:07:35 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6456310608) +theislab,gh-dashboard,theislab/gh-dashboard,0,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,0,a0cd24f7128156323f65badecd4473650c3b9e57,[status] 2023-10-09 12:07:41 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6468964430) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,greatpy,theislab/greatpy,8,3,3,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA theislab,gut_lineage,theislab/gut_lineage,2,3,0,3,FALSE,https://github.com/theislab/gut_lineage,2,NA,NA,NA @@ -151,25 +151,12 @@ theislab,intercode,theislab/intercode,6,3,1,1,FALSE,https://github.com/theislab/ theislab,ipsc_ipd_analysis,theislab/ipsc_ipd_analysis,0,3,0,0,FALSE,https://github.com/theislab/ipsc_ipd_analysis,0,NA,NA,NA theislab,kBET,theislab/kBET,136,9,8,23,FALSE,https://github.com/theislab/kBET,136,NA,NA,NA theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/kbranches,5,NA,NA,NA -theislab,moscot,theislab/moscot,67,4,40,6,FALSE,https://github.com/theislab/moscot,67,4ffcf14551cfc2fcabd8b7835c49bdc3dcff9333,"Deps/update ott (#557) - -* update notebooks - -* update ottjax - -* adapt to ott-jax=0.4.1 - -* uniformly allow none for epsilon - -* fix regTICost - -* incorporate feedback",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/5787079842) -theislab,moscot,theislab/moscot,67,4,40,6,FALSE,https://github.com/theislab/moscot,67,b233601b6aecd7259aaa1a5dba107f2963420614,"Update/lrgw2 (#613) +theislab,moscot,theislab/moscot,67,4,37,6,FALSE,https://github.com/theislab/moscot,67,b233601b6aecd7259aaa1a5dba107f2963420614,"Update/lrgw2 (#613) Co-authored-by: Arina Danilina -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/6456325855) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/6456325879) +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/6456571831) theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,1,2,0,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,1,NA,NA,NA theislab,moscot_benchmarks,theislab/moscot_benchmarks,1,2,1,0,FALSE,https://github.com/theislab/moscot_benchmarks,1,NA,NA,NA theislab,moscot_not,theislab/moscot_not,2,2,8,0,FALSE,https://github.com/theislab/moscot_not,2,NA,NA,NA @@ -196,10 +183,10 @@ theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimul theislab,paga,theislab/paga,169,10,21,29,FALSE,https://github.com/theislab/paga,169,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,7,0,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,3,3,0,5,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,3,NA,NA,NA -theislab,pertpy,theislab/pertpy,50,5,27,10,FALSE,https://github.com/theislab/pertpy,50,404835c82f9a3d943b85973c10130303d090839d,"Revert ""Deleted JaxscgenPlot"" +theislab,pertpy,theislab/pertpy,50,5,28,10,FALSE,https://github.com/theislab/pertpy,50,404835c82f9a3d943b85973c10130303d090839d,"Revert ""Deleted JaxscgenPlot"" This reverts commit 161fc137c5a23320a5799a22cd4d7212b550bca9.",[![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) -theislab,pertpy,theislab/pertpy,50,5,27,10,FALSE,https://github.com/theislab/pertpy,50,b58f7fcdb80c04bdb4c21508e3c6707b990a358c,"Installation Apple Silicon (#393) +theislab,pertpy,theislab/pertpy,50,5,28,10,FALSE,https://github.com/theislab/pertpy,50,b58f7fcdb80c04bdb4c21508e3c6707b990a358c,"Installation Apple Silicon (#393) * Added installation and contributing instructions for Apple Silicon users. @@ -217,7 +204,7 @@ for more information, see https://pre-commit.ci --------- -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6416606738) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6416606734) [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6416606732) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6416606735) +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6416606738) theislab,pertpy-datasets,theislab/pertpy-datasets,1,3,0,1,FALSE,https://github.com/theislab/pertpy-datasets,1,NA,NA,NA theislab,pertpy-tutorials,theislab/pertpy-tutorials,4,4,4,6,FALSE,https://github.com/theislab/pertpy-tutorials,4,NA,NA,NA theislab,perturbation-metrics,theislab/perturbation-metrics,0,2,0,0,FALSE,https://github.com/theislab/perturbation-metrics,0,NA,NA,NA @@ -227,11 +214,11 @@ theislab,reproducibility_AutoGeneS,theislab/reproducibility_AutoGeneS,0,3,0,0,FA theislab,sc-best-practices-ce,theislab/sc-best-practices-ce,5,7,2,3,FALSE,https://github.com/theislab/sc-best-practices-ce,5,NA,NA,NA theislab,sc-pert,theislab/sc-pert,108,6,5,8,FALSE,https://github.com/theislab/sc-pert,108,NA,NA,NA theislab,scAnalysisTutorial,theislab/scAnalysisTutorial,10,3,0,3,FALSE,https://github.com/theislab/scAnalysisTutorial,10,NA,NA,NA -theislab,scArches-reproducibility,theislab/scArches-reproducibility,27,5,5,2,FALSE,https://github.com/theislab/scArches-reproducibility,27,NA,NA,NA +theislab,scArches-reproducibility,theislab/scArches-reproducibility,28,5,5,2,FALSE,https://github.com/theislab/scArches-reproducibility,28,NA,NA,NA theislab,scCODA,theislab/scCODA,119,9,9,21,FALSE,https://github.com/theislab/scCODA,119,NA,NA,NA theislab,scCODA_reproducibility,theislab/scCODA_reproducibility,6,5,0,1,FALSE,https://github.com/theislab/scCODA_reproducibility,6,NA,NA,NA theislab,scPoli_legacy,theislab/scPoli_legacy,1,5,0,0,FALSE,https://github.com/theislab/scPoli_legacy,1,NA,NA,NA -theislab,scPoli_reproduce,theislab/scPoli_reproduce,5,3,1,2,FALSE,https://github.com/theislab/scPoli_reproduce,5,NA,NA,NA +theislab,scPoli_reproduce,theislab/scPoli_reproduce,6,3,1,3,FALSE,https://github.com/theislab/scPoli_reproduce,6,NA,NA,NA theislab,scTab,theislab/scTab,1,0,0,0,FALSE,https://github.com/theislab/scTab,1,NA,NA,NA theislab,sc_analysis_template,theislab/sc_analysis_template,3,3,0,0,FALSE,https://github.com/theislab/sc_analysis_template,3,NA,NA,NA theislab,sc_ketamine_analysis,theislab/sc_ketamine_analysis,0,4,0,0,FALSE,https://github.com/theislab/sc_ketamine_analysis,0,NA,NA,NA @@ -241,18 +228,18 @@ theislab,scanpy-in-R,theislab/scanpy-in-R,12,3,1,0,FALSE,https://github.com/thei theislab,scanpy.org,theislab/scanpy.org,0,7,1,0,FALSE,https://github.com/theislab/scanpy.org,0,NA,NA,NA theislab,scanpy_neighbors,theislab/scanpy_neighbors,0,3,0,1,FALSE,https://github.com/theislab/scanpy_neighbors,0,NA,NA,NA theislab,scanpy_squidpy_demo_2021,theislab/scanpy_squidpy_demo_2021,2,4,0,0,FALSE,https://github.com/theislab/scanpy_squidpy_demo_2021,2,NA,NA,NA -theislab,scanpydoc,theislab/scanpydoc,12,6,3,5,FALSE,https://github.com/theislab/scanpydoc,12,ab59762f6e1bddf9c6853c079ebbb775e4a49ec4,"[pre-commit.ci] pre-commit autoupdate (#96) +theislab,scanpydoc,theislab/scanpydoc,12,6,3,5,FALSE,https://github.com/theislab/scanpydoc,12,8a5b9e6dd0d839c302a153333d97208ffb12f47a,"[pre-commit.ci] pre-commit autoupdate (#97) -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/6393549057) -theislab,scarches,theislab/scarches,278,14,29,45,FALSE,https://github.com/theislab/scarches,278,NA,NA,NA +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/6461732304) +theislab,scarches,theislab/scarches,280,14,29,45,FALSE,https://github.com/theislab/scarches,280,NA,NA,NA theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,5,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,5,NA,NA,NA theislab,scgen,theislab/scgen,217,10,18,48,FALSE,https://github.com/theislab/scgen,217,d79e1f04233c30f9a4eb5b8d57718127909807d7,Merge pull request #87 from theislab/batch_corr_labels,[![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) theislab,scgen-reproducibility,theislab/scgen-reproducibility,17,4,5,8,FALSE,https://github.com/theislab/scgen-reproducibility,17,NA,NA,NA -theislab,scib,theislab/scib,236,17,27,48,FALSE,https://github.com/theislab/scib,NA,ed3e2846414ca1e3dc07552c0eef1e68d82230d4,Bump version: 1.1.3 → 1.1.4,[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) +theislab,scib,theislab/scib,237,17,27,48,FALSE,https://github.com/theislab/scib,NA,ed3e2846414ca1e3dc07552c0eef1e68d82230d4,Bump version: 1.1.3 → 1.1.4,[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) theislab,scib-pipeline,theislab/scib-pipeline,40,7,14,25,FALSE,https://github.com/theislab/scib-pipeline,40,1180bcb35829d6d2984202268b4d1d11c511e20c,Merge branch 'fix/igraph_dependency' into rpy2_unpin,[![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) theislab,scib-reproducibility,theislab/scib-reproducibility,42,6,2,11,FALSE,https://github.com/theislab/scib-reproducibility,42,NA,NA,NA -theislab,scvelo,theislab/scvelo,357,15,75,96,FALSE,https://github.com/theislab/scvelo,357,NA,NA,NA +theislab,scvelo,theislab/scvelo,357,15,76,96,FALSE,https://github.com/theislab/scvelo,357,NA,NA,NA theislab,scvelo_notebooks,theislab/scvelo_notebooks,23,2,2,12,FALSE,https://github.com/theislab/scvelo_notebooks,23,NA,NA,NA theislab,sfaira,theislab/sfaira,130,8,177,14,FALSE,https://github.com/theislab/sfaira,130,55e110648922c12b327dce89f87acee5998cef92,"small change to eliminate obsolete np.int calls (#738) @@ -260,7 +247,7 @@ Co-authored-by: David S. Fischer Co-authored-by: Leander <20015434+le-ander@users.noreply.github.com>",[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665642) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665653) [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665648) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665649) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665641) theislab,sfaira,theislab/sfaira,130,8,177,14,FALSE,https://github.com/theislab/sfaira,130,c50240a74530e614ab7681bf9c63b04cb815b361,"Merge pull request #589 from theislab/release -Release 0.3.12",[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6450785718) +Release 0.3.12",[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6462962734) theislab,sfaira-portal,theislab/sfaira-portal,0,4,2,0,FALSE,https://github.com/theislab/sfaira-portal,0,NA,NA,NA theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theislab/sfaira-site,0,NA,NA,NA theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA @@ -418,11 +405,11 @@ Signed-off-by: zethson Co-authored-by: xlancelottx Co-authored-by: zethson Co-authored-by: Anna Schaar ",[![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1163,30,20,421,FALSE,https://github.com/theislab/single-cell-tutorial,1163,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1165,30,20,421,FALSE,https://github.com/theislab/single-cell-tutorial,1165,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,3,4,4,3,FALSE,https://github.com/theislab/singlecell_proteomics,3,NA,NA,NA theislab,spapros,theislab/spapros,19,3,14,5,FALSE,https://github.com/theislab/spapros,19,c4c0903758ecb1acd0e16c1d227e59e8be1e28de,"Merge pull request #288 from theislab/development -Mention python package in docs",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6451277191) +Mention python package in docs",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6463545821) theislab,spapros,theislab/spapros,19,3,14,5,FALSE,https://github.com/theislab/spapros,19,d2f5c628c6cff3ae8168650e1cbbca846d40824b,"[DEPENDABOT]: Bump actions/checkout from 3.0.2 to 4.1.0 Bumps [actions/checkout](https://github.com/actions/checkout) from 3.0.2 to 4.1.0.
theislab/scib236237 17 27 48 8 177 14 c50240
6 15 143411d4093ef0
theislab/ncem theislab/moscot 67 44064ffcf1
theislab/moscot6744037 6 - b23360
theislab/destiny 64 5 8f083f
theislab/ehrapy 53 5367388 84d33c
theislab/ehrapy 53 5367388 ec54de
theislab/pertpy 50 52728 10 <a href=“https://github.com/theislab/pertpy/commit/404835c82f9a3d943b85973c10130303d090839d” title=“Revert”Deleted JaxscgenPlot”“>404835
theislab/pertpy 50 52728 10 - - - b58f7f
theislab/scib-pipeline 40 7 1180bc
theislab/batchglm 26 4 11ffbb
theislab/batchglm 26 4 b893fd
theislab/batchglm 26 4 e78395
theislab/spapros 19 3 14 5 - c4c090
theislab/spapros 19 3 d2f5c6
theislab/geome1213 3 5 4 5bf0cd
theislab/scanpydoc 12 6 3 5ab59768a5b9e
theislab/cellrank_notebooks 6 4 677784
theislab/moscot_notebooks 6 1 bbca9f
theislab/ehrapy-datasets 4 2 cb7707
theislab/batch_correction_cellpainting 1 1 11 1 -09f9e6 +4285a2
theislab/bindome 1 3 3cb12b
theislab/cellrank2_reproducibility 1 0 96c815
theislab/transcription_factor_activity 1 1 ced39f
theislab/gh-dashboard 0 2 0 0386aeca0cd24
theislab/idtrack 0 1 12aa73
theislab/idtrack 0 1 1f47f4
theislab/idtrack 0 1
theislab/single-cell-tutorial11631165 30 20 421 theislab/scvelo 357 157576 96
theislab/scarches278280 14 29 45
theislab/cpa4647 4 7 10
theislab/scArches-reproducibility2728 5 5 2 1
theislab/scPoli_reproduce6313
theislab/sfaira_tutorials 6 4 3 2
theislab/trVAE_reproducibility 6 3 2 4
theislab/2018_Angelidis 5 5 0 5
theislab/disent 5 3 0 0
theislab/InterpretableAutoencoders 5 5 0 1
theislab/kbranches 5 7 0 0
theislab/mouse_cross-condition_pancreatic_islet_atlas 5 2 0 2
theislab/sc-best-practices-ce 5 7 2 3
theislab/scanpy-demo-czbiohub 5 5 0 4
theislab/scatac_poisson_reproducibility 5 3 0 0
theislab/scPoli_reproduce5312
theislab/cellrank_reproducibility_preprint 4 theislab/ehrapy-tutorials 4 223 2