From 43b48afed8c9f997726d1754611793030299cc6d Mon Sep 17 00:00:00 2001 From: GitHub Actions Date: Wed, 27 Mar 2024 12:14:08 +0000 Subject: [PATCH] [status] 2024-03-27 12:14:08 UTC --- README.md | 105 +++++++-------- index.html | 384 ++++++++++++++++++++++++++++------------------------- repos.csv | 68 +++++----- 3 files changed, 289 insertions(+), 268 deletions(-) diff --git a/README.md b/README.md index c04cee2..7a99fb8 100644 --- a/README.md +++ b/README.md @@ -2,67 +2,70 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-03-26 12:09:55 UTC +2024-03-27 12:11:32 UTC -| Repo | Stars | Subscribers | Issues | Forks | Status | Commit | -|:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 611 | 16 | 50 | 134 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718026) | 2e0a1f | -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 611 | 16 | 50 | 134 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920583) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920585) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920584) | 83f34d | -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 611 | 16 | 50 | 134 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | -| [theislab/scvelo](https://github.com/theislab/scvelo) | 384 | 13 | 55 | 100 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317739547) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317739551) [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 292 | 8 | 14 | 36 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8413162016) [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8317773998) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8413219417) | 906957 | -| [theislab/scib](https://github.com/theislab/scib) | 261 | 16 | 38 | 56 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/7468185443) | d42f91 | -| [theislab/scgen](https://github.com/theislab/scgen) | 243 | 9 | 19 | 50 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 132 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/8428686476) | 55bcbb | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 132 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 132 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | -| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 125 | 5 | 21 | 24 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/8433074462) | 045471 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 108 | 6 | 39 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8390347476) | 27d854 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 108 | 6 | 39 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 108 | 6 | 39 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8427164548) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8427164545) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8427164547) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8427164559) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8427164549) | fa6087 | -| [theislab/ncem](https://github.com/theislab/ncem) | 96 | 6 | 26 | 13 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | -| [theislab/ncem](https://github.com/theislab/ncem) | 96 | 6 | 26 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | -| [theislab/moscot](https://github.com/theislab/moscot) | 89 | 3 | 40 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/8263290173) | 6ea9a1 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 80 | 4 | 30 | 15 | [![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446183) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446170) [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446165) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446171) | 54b7f3 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 80 | 4 | 30 | 15 | [![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) | d00c5f | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 80 | 4 | 30 | 15 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8426870451) | e8aef5 | -| [theislab/destiny](https://github.com/theislab/destiny) | 67 | 5 | 31 | 12 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) | 300eb2 | -| [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 55 | 7 | 16 | 26 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | -| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825767) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825761) | 11ffbb | -| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | -| [theislab/spapros](https://github.com/theislab/spapros) | 21 | 3 | 15 | 5 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/6854088652) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/6854088648) | 642fb3 | -| [theislab/spapros](https://github.com/theislab/spapros) | 21 | 3 | 15 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/7523141362) | c4c090 | -| [theislab/hadge](https://github.com/theislab/hadge) | 18 | 3 | 12 | 5 | [![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/8294357090) [![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/8294357101) | 192696 | -| [theislab/hadge](https://github.com/theislab/hadge) | 18 | 3 | 12 | 5 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | -| [theislab/geome](https://github.com/theislab/geome) | 15 | 3 | 4 | 4 | [![](https://github.com/theislab/geome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/geome/actions/runs/7921988741) [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/7921988747) | 294880 | -| [theislab/geome](https://github.com/theislab/geome) | 15 | 3 | 4 | 4 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | -| [theislab/graphcompass](https://github.com/theislab/graphcompass) | 11 | 1 | 0 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | -| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | -| [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 5 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | -| [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 4 | 1 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/8315825726) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/8315825728) | f5c767 | -| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 4 | 3 | 0 | 1 | [![](https://github.com/theislab/ehrdata/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/8427163500) [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/8427163498) | 57ac58 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/8435576389) | e7f7a5 | -| [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | +| Repo | Stars | Subscribers | Issues | Forks | Status | Commit | +|:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 612 | 16 | 50 | 134 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718026) | 2e0a1f | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 612 | 16 | 50 | 134 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920583) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920585) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920584) | 83f34d | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 612 | 16 | 50 | 134 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | +| [theislab/scvelo](https://github.com/theislab/scvelo) | 384 | 13 | 55 | 100 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317739547) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317739551) [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 292 | 8 | 15 | 36 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8413162016) [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8317773998) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8413219417) | 906957 | +| [theislab/scib](https://github.com/theislab/scib) | 262 | 16 | 39 | 56 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/7468185443) | d42f91 | +| [theislab/scgen](https://github.com/theislab/scgen) | 243 | 9 | 19 | 50 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 132 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/8444531276) | 55bcbb | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 132 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 132 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | +| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 126 | 5 | 21 | 24 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/8433074462) | 045471 | +| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 111 | 7 | 15 | 16 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/8440636031) | 8b6c45 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 108 | 6 | 40 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8390347476) | 27d854 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 108 | 6 | 40 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 108 | 6 | 40 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8427164548) | fa6087 | +| [theislab/ncem](https://github.com/theislab/ncem) | 96 | 6 | 26 | 13 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | +| [theislab/ncem](https://github.com/theislab/ncem) | 96 | 6 | 26 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | +| [theislab/moscot](https://github.com/theislab/moscot) | 89 | 3 | 39 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/8263290173) | 6ea9a1 | +| [theislab/moscot](https://github.com/theislab/moscot) | 89 | 3 | 39 | 6 | [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/8450861599) [![](https://github.com/theislab/moscot/workflows/Test%20examples/badge.svg)](https://github.com/theislab/moscot/actions/runs/8450861600) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/8450861601) | 939e91 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 80 | 4 | 27 | 15 | [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8438254187) [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8438254195) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8438254199) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8438254185) | 193fa9 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 80 | 4 | 27 | 15 | [![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446183) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446170) [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446165) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446171) | 54b7f3 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 80 | 4 | 27 | 15 | [![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) | d00c5f | +| [theislab/destiny](https://github.com/theislab/destiny) | 67 | 5 | 31 | 12 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) | 300eb2 | +| [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 55 | 7 | 16 | 26 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | +| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825767) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825761) | 11ffbb | +| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | +| [theislab/spapros](https://github.com/theislab/spapros) | 21 | 3 | 15 | 5 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/6854088652) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/6854088648) | 642fb3 | +| [theislab/spapros](https://github.com/theislab/spapros) | 21 | 3 | 15 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/7523141362) | c4c090 | +| [theislab/hadge](https://github.com/theislab/hadge) | 19 | 3 | 12 | 5 | [![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/8294357090) [![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/8294357101) | 192696 | +| [theislab/hadge](https://github.com/theislab/hadge) | 19 | 3 | 12 | 5 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | +| [theislab/geome](https://github.com/theislab/geome) | 15 | 3 | 4 | 4 | [![](https://github.com/theislab/geome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/geome/actions/runs/7921988741) [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/7921988747) | 294880 | +| [theislab/geome](https://github.com/theislab/geome) | 15 | 3 | 4 | 4 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | +| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 5 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/8440632983) | 85dd21 | +| [theislab/graphcompass](https://github.com/theislab/graphcompass) | 11 | 1 | 0 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | +| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | +| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 2 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/8436525895) | bc71ed | +| [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 5 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | +| [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 4 | 1 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/8315825726) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/8315825728) | f5c767 | +| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 4 | 3 | 0 | 1 | [![](https://github.com/theislab/ehrdata/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/8427163500) [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/8427163498) | 57ac58 | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/8451377054) | d4501b | +| [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | ## Repos without Github Actions | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1277 | 30 | 21 | 436 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1281 | 30 | 21 | 437 | | [theislab/scarches](https://github.com/theislab/scarches) | 300 | 14 | 35 | 48 | -| [theislab/dca](https://github.com/theislab/dca) | 229 | 11 | 32 | 67 | +| [theislab/dca](https://github.com/theislab/dca) | 229 | 11 | 31 | 67 | | [theislab/paga](https://github.com/theislab/paga) | 183 | 10 | 21 | 31 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 170 | 6 | 106 | 23 | | [theislab/kBET](https://github.com/theislab/kBET) | 138 | 8 | 7 | 23 | | [theislab/scCODA](https://github.com/theislab/scCODA) | 129 | 9 | 8 | 23 | -| [theislab/sc-pert](https://github.com/theislab/sc-pert) | 123 | 6 | 6 | 10 | -| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 111 | 7 | 16 | 16 | -| [theislab/chemCPA](https://github.com/theislab/chemCPA) | 85 | 5 | 8 | 22 | +| [theislab/sc-pert](https://github.com/theislab/sc-pert) | 124 | 6 | 6 | 10 | +| [theislab/chemCPA](https://github.com/theislab/chemCPA) | 86 | 5 | 8 | 22 | | [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 74 | 3 | 0 | 9 | -| [theislab/cpa](https://github.com/theislab/cpa) | 72 | 4 | 13 | 15 | +| [theislab/cpa](https://github.com/theislab/cpa) | 72 | 4 | 15 | 15 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 53 | 6 | 4 | 8 | | [theislab/trVAE](https://github.com/theislab/trVAE) | 53 | 7 | 2 | 11 | | [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 49 | 6 | 3 | 15 | @@ -85,7 +88,6 @@ GitHub Dashboard | [theislab/scanpy-in-R](https://github.com/theislab/scanpy-in-R) | 13 | 3 | 1 | 0 | | [theislab/multicpa](https://github.com/theislab/multicpa) | 12 | 2 | 1 | 2 | | [theislab/multigrate](https://github.com/theislab/multigrate) | 12 | 3 | 7 | 3 | -| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 4 | 5 | | [theislab/MetaMap](https://github.com/theislab/MetaMap) | 11 | 7 | 0 | 8 | | [theislab/scPoli_reproduce](https://github.com/theislab/scPoli_reproduce) | 11 | 3 | 1 | 4 | | [theislab/diffxpy_tutorials](https://github.com/theislab/diffxpy_tutorials) | 10 | 8 | 4 | 2 | @@ -118,7 +120,6 @@ GitHub Dashboard | [theislab/2020_Mayr](https://github.com/theislab/2020_Mayr) | 6 | 6 | 0 | 8 | | [theislab/disent](https://github.com/theislab/disent) | 6 | 3 | 0 | 0 | | [theislab/intercode](https://github.com/theislab/intercode) | 6 | 3 | 1 | 1 | -| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 3 | 2 | | [theislab/scatac_poisson_reproducibility](https://github.com/theislab/scatac_poisson_reproducibility) | 6 | 3 | 0 | 0 | | [theislab/sfaira_tutorials](https://github.com/theislab/sfaira_tutorials) | 6 | 4 | 3 | 2 | | [theislab/trVAE_reproducibility](https://github.com/theislab/trVAE_reproducibility) | 6 | 3 | 2 | 5 | @@ -128,6 +129,7 @@ GitHub Dashboard | [theislab/InterpretableAutoencoders](https://github.com/theislab/InterpretableAutoencoders) | 5 | 5 | 0 | 1 | | [theislab/kbranches](https://github.com/theislab/kbranches) | 5 | 7 | 0 | 0 | | [theislab/scanpy-demo-czbiohub](https://github.com/theislab/scanpy-demo-czbiohub) | 5 | 5 | 0 | 5 | +| [theislab/2022_Tritschler_pancreas_cross_species](https://github.com/theislab/2022_Tritschler_pancreas_cross_species) | 4 | 3 | 0 | 1 | | [theislab/cellrank_reproducibility_preprint](https://github.com/theislab/cellrank_reproducibility_preprint) | 4 | 2 | 0 | 0 | | [theislab/covid-perturbation](https://github.com/theislab/covid-perturbation) | 4 | 3 | 0 | 0 | | [theislab/extended-single-cell-best-practices-container](https://github.com/theislab/extended-single-cell-best-practices-container) | 4 | 4 | 2 | 1 | @@ -136,7 +138,6 @@ GitHub Dashboard | [theislab/pancreatic-endocrinogenesis](https://github.com/theislab/pancreatic-endocrinogenesis) | 4 | 3 | 0 | 5 | | [theislab/pertpy-tutorials](https://github.com/theislab/pertpy-tutorials) | 4 | 4 | 2 | 7 | | [theislab/perturbation-metrics](https://github.com/theislab/perturbation-metrics) | 4 | 2 | 1 | 0 | -| [theislab/2022_Tritschler_pancreas_cross_species](https://github.com/theislab/2022_Tritschler_pancreas_cross_species) | 3 | 3 | 0 | 1 | | [theislab/jump-cpg0016-segmentation](https://github.com/theislab/jump-cpg0016-segmentation) | 3 | 0 | 0 | 0 | | [theislab/moscot_not](https://github.com/theislab/moscot_not) | 3 | 2 | 8 | 1 | | [theislab/multires-consensus-clustering](https://github.com/theislab/multires-consensus-clustering) | 3 | 4 | 9 | 0 | diff --git a/index.html b/index.html index cbd2951..24b4c76 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

GitHub Dashboard


-2024-03-26 12:11:18 UTC

+2024-03-27 12:13:45 UTC

@@ -74,7 +74,7 @@

GitHub Dashboard

- + @@ -83,7 +83,7 @@

GitHub Dashboard

- + @@ -94,7 +94,7 @@

GitHub Dashboard

- + @@ -116,7 +116,7 @@

GitHub Dashboard

- + - + - + @@ -147,7 +147,7 @@

GitHub Dashboard

- + @@ -173,7 +173,7 @@

GitHub Dashboard

- + @@ -181,37 +181,42 @@

GitHub Dashboard

+ + + + + + + + + - + - + - + - + - + - + - + @@ -220,7 +225,7 @@

GitHub Dashboard

- + @@ -230,44 +235,58 @@

GitHub Dashboard

- + - + + + + + + + + + + - + - - + + - + - - + + - + - - + + @@ -328,7 +347,7 @@

GitHub Dashboard

- + @@ -338,7 +357,7 @@

GitHub Dashboard

- + @@ -365,6 +384,15 @@

GitHub Dashboard

+ + + + + + + + + @@ -374,7 +402,7 @@

GitHub Dashboard

- + @@ -383,6 +411,15 @@

GitHub Dashboard

+ + + + + + + + + @@ -418,8 +455,8 @@

GitHub Dashboard

- - + + @@ -485,10 +522,10 @@

Repos without Github Actions

- + - + @@ -501,7 +538,7 @@

Repos without Github Actions

- + @@ -534,200 +571,186 @@

Repos without Github Actions

- + - - - - - - - - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - - - - - - - @@ -953,75 +976,75 @@

Repos without Github Actions

- - - - - - - - + - + - + - + - + - + - + - + + + + + + + + @@ -1079,559 +1102,552 @@

Repos without Github Actions

- - - - - - - - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + diff --git a/repos.csv b/repos.csv index 4db7c42..f2aa934 100644 --- a/repos.csv +++ b/repos.csv @@ -8,7 +8,7 @@ theislab,2020_iPS_Lung_Differentiation,theislab/2020_iPS_Lung_Differentiation,2, theislab,2021_Aliluev_Tritschler_gut_HFD,theislab/2021_Aliluev_Tritschler_gut_HFD,2,4,0,1,FALSE,https://github.com/theislab/2021_Aliluev_Tritschler_gut_HFD,2,NA,NA,NA theislab,2021_PRMT7_regulates_Monocyte_Extravasation,theislab/2021_PRMT7_regulates_Monocyte_Extravasation,1,4,0,2,FALSE,https://github.com/theislab/2021_PRMT7_regulates_Monocyte_Extravasation,1,NA,NA,NA theislab,2022_Bakhti_pancreas_Syt13,theislab/2022_Bakhti_pancreas_Syt13,0,3,0,0,FALSE,https://github.com/theislab/2022_Bakhti_pancreas_Syt13,0,NA,NA,NA -theislab,2022_Tritschler_pancreas_cross_species,theislab/2022_Tritschler_pancreas_cross_species,3,3,0,1,FALSE,https://github.com/theislab/2022_Tritschler_pancreas_cross_species,3,NA,NA,NA +theislab,2022_Tritschler_pancreas_cross_species,theislab/2022_Tritschler_pancreas_cross_species,4,3,0,1,FALSE,https://github.com/theislab/2022_Tritschler_pancreas_cross_species,4,NA,NA,NA theislab,AutoGeneS,theislab/AutoGeneS,53,6,4,8,FALSE,https://github.com/theislab/AutoGeneS,53,NA,NA,NA theislab,Covid_meta_analysis,theislab/Covid_meta_analysis,24,8,2,11,FALSE,https://github.com/theislab/Covid_meta_analysis,24,NA,NA,NA theislab,DeepCollisionalCrossSection,theislab/DeepCollisionalCrossSection,13,5,1,6,FALSE,https://github.com/theislab/DeepCollisionalCrossSection,13,NA,NA,NA @@ -28,7 +28,9 @@ theislab,MRGR_stress_analysis,theislab/MRGR_stress_analysis,0,3,0,0,FALSE,https: theislab,MetaMap,theislab/MetaMap,11,7,0,8,FALSE,https://github.com/theislab/MetaMap,11,NA,NA,NA theislab,MetaMap-web,theislab/MetaMap-web,0,4,2,0,FALSE,https://github.com/theislab/MetaMap-web,0,NA,NA,NA theislab,PathReg,theislab/PathReg,8,3,0,0,FALSE,https://github.com/theislab/PathReg,8,NA,NA,NA -theislab,anndata2ri,theislab/anndata2ri,111,7,16,16,FALSE,https://github.com/theislab/anndata2ri,111,NA,NA,NA +theislab,anndata2ri,theislab/anndata2ri,111,7,15,16,FALSE,https://github.com/theislab/anndata2ri,111,8b6c453f67c6760e7d1eedb27a33c91ebedd5f5d,"[pre-commit.ci] pre-commit autoupdate (#163) + +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/8440636031) theislab,archmap_admin,theislab/archmap_admin,0,2,0,0,FALSE,https://github.com/theislab/archmap_admin,0,NA,NA,NA theislab,archmap_doc,theislab/archmap_doc,0,3,0,0,FALSE,https://github.com/theislab/archmap_doc,0,NA,NA,NA theislab,astrocytes_reprogramming_analysis,theislab/astrocytes_reprogramming_analysis,1,5,0,0,FALSE,https://github.com/theislab/astrocytes_reprogramming_analysis,1,NA,NA,NA @@ -56,7 +58,7 @@ theislab,batchglm,theislab/batchglm,26,3,46,9,FALSE,https://github.com/theislab/ theislab,bindome,theislab/bindome,1,3,5,1,FALSE,https://github.com/theislab/bindome,1,NA,NA,NA theislab,campa,theislab/campa,13,4,5,4,FALSE,https://github.com/theislab/campa,13,NA,NA,NA theislab,campa_ana,theislab/campa_ana,2,4,0,0,FALSE,https://github.com/theislab/campa_ana,2,NA,NA,NA -theislab,cellrank,theislab/cellrank,292,8,14,36,FALSE,https://github.com/theislab/cellrank,292,9069571a1806ba9336202ba8e580a12fbc6b6d1f,"Update state plotting (#1177) +theislab,cellrank,theislab/cellrank,292,8,15,36,FALSE,https://github.com/theislab/cellrank,292,9069571a1806ba9336202ba8e580a12fbc6b6d1f,"Update state plotting (#1177) * Update `TermStatesEstimator::_plot_discrete` @@ -80,35 +82,35 @@ theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,4,1,0,0,FA theislab,cellrank_notebooks,theislab/cellrank_notebooks,6,4,1,5,FALSE,https://github.com/theislab/cellrank_notebooks,6,6777840bcc146924d208c0b9b02677da63620805,[ci skip] Fix pepy badge,[![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) theislab,cellrank_reproducibility,theislab/cellrank_reproducibility,14,2,0,8,FALSE,https://github.com/theislab/cellrank_reproducibility,14,NA,NA,NA theislab,cellrank_reproducibility_preprint,theislab/cellrank_reproducibility_preprint,4,2,0,0,FALSE,https://github.com/theislab/cellrank_reproducibility_preprint,4,NA,NA,NA -theislab,chemCPA,theislab/chemCPA,85,5,8,22,FALSE,https://github.com/theislab/chemCPA,85,NA,NA,NA +theislab,chemCPA,theislab/chemCPA,86,5,8,22,FALSE,https://github.com/theislab/chemCPA,86,NA,NA,NA theislab,collideseq_reproducibility,theislab/collideseq_reproducibility,0,2,0,0,FALSE,https://github.com/theislab/collideseq_reproducibility,0,NA,NA,NA theislab,consensus-clustering-evaluation,theislab/consensus-clustering-evaluation,0,4,0,0,FALSE,https://github.com/theislab/consensus-clustering-evaluation,0,NA,NA,NA theislab,countae,theislab/countae,1,4,0,0,FALSE,https://github.com/theislab/countae,1,NA,NA,NA theislab,covid-perturbation,theislab/covid-perturbation,4,3,0,0,FALSE,https://github.com/theislab/covid-perturbation,4,NA,NA,NA theislab,covid_macrophages_integration,theislab/covid_macrophages_integration,2,5,0,4,FALSE,https://github.com/theislab/covid_macrophages_integration,2,NA,NA,NA -theislab,cpa,theislab/cpa,72,4,13,15,FALSE,https://github.com/theislab/cpa,72,NA,NA,NA +theislab,cpa,theislab/cpa,72,4,15,15,FALSE,https://github.com/theislab/cpa,72,NA,NA,NA theislab,cpa-reproducibility,theislab/cpa-reproducibility,7,2,1,1,FALSE,https://github.com/theislab/cpa-reproducibility,7,NA,NA,NA theislab,cross_system_integration,theislab/cross_system_integration,9,2,10,1,FALSE,https://github.com/theislab/cross_system_integration,9,NA,NA,NA theislab,dali,theislab/dali,0,7,0,1,FALSE,https://github.com/theislab/dali,0,NA,NA,NA -theislab,dca,theislab/dca,229,11,32,67,FALSE,https://github.com/theislab/dca,229,NA,NA,NA +theislab,dca,theislab/dca,229,11,31,67,FALSE,https://github.com/theislab/dca,229,NA,NA,NA theislab,deepflow,theislab/deepflow,31,5,1,14,FALSE,https://github.com/theislab/deepflow,31,NA,NA,NA theislab,destiny,theislab/destiny,67,5,31,12,FALSE,https://github.com/theislab/destiny,67,300eb293fb773fb3d667818b946fdd3c62b0aa05,Fix sparse matrix cast and ggplot aes_string deprecations (#65),[![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) theislab,diffxpy,theislab/diffxpy,170,6,106,23,FALSE,https://github.com/theislab/diffxpy,170,NA,NA,NA theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA theislab,disent,theislab/disent,6,3,0,0,FALSE,https://github.com/theislab/disent,6,NA,NA,NA theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA -theislab,ehrapy,theislab/ehrapy,108,6,39,14,FALSE,https://github.com/theislab/ehrapy,108,27d854b4ec26b032ddf611cd7b6cf21dd38de253,"Version 0.7.0 +theislab,ehrapy,theislab/ehrapy,108,6,40,14,FALSE,https://github.com/theislab/ehrapy,108,27d854b4ec26b032ddf611cd7b6cf21dd38de253,"Version 0.7.0 Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8390347476) -theislab,ehrapy,theislab/ehrapy,108,6,39,14,FALSE,https://github.com/theislab/ehrapy,108,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows +theislab,ehrapy,theislab/ehrapy,108,6,40,14,FALSE,https://github.com/theislab/ehrapy,108,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) -theislab,ehrapy,theislab/ehrapy,108,6,39,14,FALSE,https://github.com/theislab/ehrapy,108,fa60873509188494d0a1679ba6b3151275782dba,"[pre-commit.ci] pre-commit autoupdate (#675) +theislab,ehrapy,theislab/ehrapy,108,6,40,14,FALSE,https://github.com/theislab/ehrapy,108,fa60873509188494d0a1679ba6b3151275782dba,"[pre-commit.ci] pre-commit autoupdate (#675) updates: - [github.com/astral-sh/ruff-pre-commit: v0.3.3 → v0.3.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.3...v0.3.4) -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8427164548) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8427164545) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8427164547) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8427164559) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8427164549) +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8427164548) theislab,ehrapy-cli,theislab/ehrapy-cli,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-cli,1,NA,NA,NA theislab,ehrapy-datasets,theislab/ehrapy-datasets,5,2,0,2,FALSE,https://github.com/theislab/ehrapy-datasets,5,e441a5d0912396064360799f10de973b377ba6a5,"Merge pull request #23 from theislab/diabetes-update @@ -131,15 +133,15 @@ theislab,geome,theislab/geome,15,3,4,4,FALSE,https://github.com/theislab/geome,1 theislab,geome,theislab/geome,15,3,4,4,FALSE,https://github.com/theislab/geome,15,5bf0cd07b2ea7fa224a37f69232542a9e686c5bf,"Merge pull request #31 from theislab/template-update Automated template update from cookiecutter-scverse",[![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) -theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,e7f7a54cbda5ae104597ddb469fc755dda0c8143,[status] 2024-03-25 12:12:47 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/8435576389) +theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,d4501b683e894b0005fa2c72fca2798b1f03e8d1,[status] 2024-03-26 12:11:28 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/8451377054) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,graphcompass,theislab/graphcompass,11,1,0,0,FALSE,https://github.com/theislab/graphcompass,11,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,8,3,4,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA theislab,gut_lineage,theislab/gut_lineage,2,3,0,3,FALSE,https://github.com/theislab/gut_lineage,2,NA,NA,NA -theislab,hadge,theislab/hadge,18,3,12,5,FALSE,https://github.com/theislab/hadge,18,192696bf2970ebfcd8cc4384f6d021c3011ef70e,"Merge pull request #45 from theislab/docs +theislab,hadge,theislab/hadge,19,3,12,5,FALSE,https://github.com/theislab/hadge,19,192696bf2970ebfcd8cc4384f6d021c3011ef70e,"Merge pull request #45 from theislab/docs Improve documentation and fix bug of generating anndata",[![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/8294357090) [![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/8294357101) -theislab,hadge,theislab/hadge,18,3,12,5,FALSE,https://github.com/theislab/hadge,18,1ed105ed192e66898ff7a305a2c21f5b8c81bcf7,fix gdown bug,[![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) +theislab,hadge,theislab/hadge,19,3,12,5,FALSE,https://github.com/theislab/hadge,19,1ed105ed192e66898ff7a305a2c21f5b8c81bcf7,fix gdown bug,[![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) theislab,hadge-reproducibility,theislab/hadge-reproducibility,0,2,0,0,FALSE,https://github.com/theislab/hadge-reproducibility,0,NA,NA,NA theislab,icml_cbw_2022_clcvae,theislab/icml_cbw_2022_clcvae,0,3,0,0,FALSE,https://github.com/theislab/icml_cbw_2022_clcvae,0,NA,NA,NA theislab,idtrack,theislab/idtrack,0,1,6,0,FALSE,https://github.com/theislab/idtrack,0,12aa73e176bef9d1f91e9dc8c68010a1ac430c18,"Merge pull request #55 from theislab/development @@ -160,13 +162,18 @@ theislab,jump-cpg0016-segmentation,theislab/jump-cpg0016-segmentation,3,0,0,0,FA theislab,kBET,theislab/kBET,138,8,7,23,FALSE,https://github.com/theislab/kBET,138,NA,NA,NA theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/kbranches,5,NA,NA,NA theislab,masterpraktikum_ssl_segmentation,theislab/masterpraktikum_ssl_segmentation,0,2,1,1,FALSE,https://github.com/theislab/masterpraktikum_ssl_segmentation,0,NA,NA,NA -theislab,moscot,theislab/moscot,89,3,40,6,FALSE,https://github.com/theislab/moscot,89,6ea9a1612b829aaa4a1c192210e340a9c08d4ac6,"fix bug in quad problem marginals (#666) +theislab,moscot,theislab/moscot,89,3,39,6,FALSE,https://github.com/theislab/moscot,89,6ea9a1612b829aaa4a1c192210e340a9c08d4ac6,"fix bug in quad problem marginals (#666) Co-authored-by: Dominik Klein ",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/8263290173) +theislab,moscot,theislab/moscot,89,3,39,6,FALSE,https://github.com/theislab/moscot,89,939e91bef0e6f9daafca2ef4f4988e8319292c83,"Merge pull request #679 from theislab/pre-commit-ci-update-config + +[pre-commit.ci] pre-commit autoupdate",[![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/8450861599) [![](https://github.com/theislab/moscot/workflows/Test%20examples/badge.svg)](https://github.com/theislab/moscot/actions/runs/8450861600) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/8450861601) theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,1,2,1,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,1,NA,NA,NA theislab,moscot_benchmarks,theislab/moscot_benchmarks,2,2,1,0,FALSE,https://github.com/theislab/moscot_benchmarks,2,NA,NA,NA theislab,moscot_not,theislab/moscot_not,3,2,8,1,FALSE,https://github.com/theislab/moscot_not,3,NA,NA,NA -theislab,moscot_notebooks,theislab/moscot_notebooks,6,1,3,2,FALSE,https://github.com/theislab/moscot_notebooks,6,NA,NA,NA +theislab,moscot_notebooks,theislab/moscot_notebooks,6,1,2,2,FALSE,https://github.com/theislab/moscot_notebooks,6,bc71edf71be1ef2fd8a52d44414ece68f98e12b4,"Merge pull request #69 from theislab/revert-68-add/callback_ex + +Revert ""Passing callbacks example""",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/8436525895) theislab,moslin,theislab/moslin,9,1,0,1,FALSE,https://github.com/theislab/moslin,9,NA,NA,NA theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,7,2,0,3,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,7,NA,NA,NA theislab,mubind,theislab/mubind,19,3,30,0,FALSE,https://github.com/theislab/mubind,19,NA,NA,NA @@ -188,16 +195,11 @@ theislab,paga,theislab/paga,183,10,21,31,FALSE,https://github.com/theislab/paga, theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,7,0,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,4,3,0,5,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,4,NA,NA,NA theislab,pdac_analysis,theislab/pdac_analysis,0,1,0,0,FALSE,https://github.com/theislab/pdac_analysis,0,NA,NA,NA -theislab,pertpy,theislab/pertpy,80,4,30,15,FALSE,https://github.com/theislab/pertpy,80,54b7f30d58905fa4e7ad83c4229281072e72b661,"Fix nox +theislab,pertpy,theislab/pertpy,80,4,27,15,FALSE,https://github.com/theislab/pertpy,80,193fa9e2ee0465b9b43fb9f7a1cee346306e169e,Merge branch 'main' of https://github.com/theislab/pertpy,[![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8438254187) [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8438254195) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8438254199) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8438254185) +theislab,pertpy,theislab/pertpy,80,4,27,15,FALSE,https://github.com/theislab/pertpy,80,54b7f30d58905fa4e7ad83c4229281072e72b661,"Fix nox Signed-off-by: zethson ",[![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446183) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446170) [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446165) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446171) -theislab,pertpy,theislab/pertpy,80,4,30,15,FALSE,https://github.com/theislab/pertpy,80,d00c5f9e7243d6b1984becf973509f5f8ae425fc,pre-commit,[![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) -theislab,pertpy,theislab/pertpy,80,4,30,15,FALSE,https://github.com/theislab/pertpy,80,e8aef51764003573391119b2bc4b43765bd3977b,"[pre-commit.ci] pre-commit autoupdate (#571) - -updates: -- [github.com/astral-sh/ruff-pre-commit: v0.3.3 → v0.3.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.3...v0.3.4) - -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8426870451) +theislab,pertpy,theislab/pertpy,80,4,27,15,FALSE,https://github.com/theislab/pertpy,80,d00c5f9e7243d6b1984becf973509f5f8ae425fc,pre-commit,[![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) theislab,pertpy-datasets,theislab/pertpy-datasets,1,3,1,1,FALSE,https://github.com/theislab/pertpy-datasets,1,NA,NA,NA theislab,pertpy-tutorials,theislab/pertpy-tutorials,4,4,2,7,FALSE,https://github.com/theislab/pertpy-tutorials,4,NA,NA,NA theislab,perturbation-metrics,theislab/perturbation-metrics,4,2,1,0,FALSE,https://github.com/theislab/perturbation-metrics,4,NA,NA,NA @@ -205,7 +207,7 @@ theislab,pseudodynamics,theislab/pseudodynamics,39,7,0,6,FALSE,https://github.co theislab,reproducability_AutoGeneS,theislab/reproducability_AutoGeneS,0,3,0,0,FALSE,https://github.com/theislab/reproducability_AutoGeneS,0,NA,NA,NA theislab,reproducibility_AutoGeneS,theislab/reproducibility_AutoGeneS,0,3,0,0,FALSE,https://github.com/theislab/reproducibility_AutoGeneS,0,NA,NA,NA theislab,sc-best-practices-ce,theislab/sc-best-practices-ce,8,8,2,3,FALSE,https://github.com/theislab/sc-best-practices-ce,8,NA,NA,NA -theislab,sc-pert,theislab/sc-pert,123,6,6,10,FALSE,https://github.com/theislab/sc-pert,123,NA,NA,NA +theislab,sc-pert,theislab/sc-pert,124,6,6,10,FALSE,https://github.com/theislab/sc-pert,124,NA,NA,NA theislab,scAnalysisTutorial,theislab/scAnalysisTutorial,10,3,0,3,FALSE,https://github.com/theislab/scAnalysisTutorial,10,NA,NA,NA theislab,scArches-reproducibility,theislab/scArches-reproducibility,31,5,5,0,FALSE,https://github.com/theislab/scArches-reproducibility,31,NA,NA,NA theislab,scCODA,theislab/scCODA,129,9,8,23,FALSE,https://github.com/theislab/scCODA,129,NA,NA,NA @@ -221,13 +223,15 @@ theislab,scanpy-in-R,theislab/scanpy-in-R,13,3,1,0,FALSE,https://github.com/thei theislab,scanpy.org,theislab/scanpy.org,0,7,1,0,FALSE,https://github.com/theislab/scanpy.org,0,NA,NA,NA theislab,scanpy_neighbors,theislab/scanpy_neighbors,0,3,0,1,FALSE,https://github.com/theislab/scanpy_neighbors,0,NA,NA,NA theislab,scanpy_squidpy_demo_2021,theislab/scanpy_squidpy_demo_2021,2,4,0,0,FALSE,https://github.com/theislab/scanpy_squidpy_demo_2021,2,NA,NA,NA -theislab,scanpydoc,theislab/scanpydoc,12,6,4,5,FALSE,https://github.com/theislab/scanpydoc,12,NA,NA,NA +theislab,scanpydoc,theislab/scanpydoc,12,6,3,5,FALSE,https://github.com/theislab/scanpydoc,12,85dd211ae692c863ad1b3e22c5dd453d6975e68a,"[pre-commit.ci] pre-commit autoupdate (#143) + +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/8440632983) theislab,scarches,theislab/scarches,300,14,35,48,FALSE,https://github.com/theislab/scarches,300,NA,NA,NA theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,6,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,6,NA,NA,NA theislab,scgen,theislab/scgen,243,9,19,50,FALSE,https://github.com/theislab/scgen,243,d79e1f04233c30f9a4eb5b8d57718127909807d7,Merge pull request #87 from theislab/batch_corr_labels,[![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) theislab,scgen-reproducibility,theislab/scgen-reproducibility,17,4,5,8,FALSE,https://github.com/theislab/scgen-reproducibility,17,NA,NA,NA -theislab,scib,theislab/scib,261,16,38,56,FALSE,https://github.com/theislab/scib,NA,d42f919b5b0aac86f19937d4d4d02bf2e4d8bdbd,"Update dependencies (#396) +theislab,scib,theislab/scib,262,16,39,56,FALSE,https://github.com/theislab/scib,NA,d42f919b5b0aac86f19937d4d4d02bf2e4d8bdbd,"Update dependencies (#396) * pin pandas 2 and adapt breaking code @@ -240,7 +244,7 @@ theislab,scvelo,theislab/scvelo,384,13,55,100,FALSE,https://github.com/theislab/ Fix package directory.",[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317739547) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317739551) [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) theislab,scvelo_notebooks,theislab/scvelo_notebooks,26,2,2,12,FALSE,https://github.com/theislab/scvelo_notebooks,26,NA,NA,NA -theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/8428686476) +theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/8444531276) theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,5fcf932c44613e6bf4063ef3075ad6062bf5d9a1,round restored counts in some affected datasets,[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,ceb14c946f699c38d18a32192b76d4639caf845e,fix download links,[![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) theislab,sfaira-portal,theislab/sfaira-portal,0,4,2,0,FALSE,https://github.com/theislab/sfaira-portal,0,NA,NA,NA @@ -248,13 +252,13 @@ theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theis theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,3,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA -theislab,single-cell-best-practices,theislab/single-cell-best-practices,611,16,50,134,FALSE,https://github.com/theislab/single-cell-best-practices,611,2e0a1f475d614c86bdc91c8544870e702f67c38e,"Update differential_gene_expression.ipynb (#256) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,612,16,50,134,FALSE,https://github.com/theislab/single-cell-best-practices,612,2e0a1f475d614c86bdc91c8544870e702f67c38e,"Update differential_gene_expression.ipynb (#256) Corrected typographical and grammatical errors.",[![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718026) -theislab,single-cell-best-practices,theislab/single-cell-best-practices,611,16,50,134,FALSE,https://github.com/theislab/single-cell-best-practices,611,83f34dabe86da58240a9d08e118c2f8a8dc99079,"Update raw_data_processing.md +theislab,single-cell-best-practices,theislab/single-cell-best-practices,612,16,50,134,FALSE,https://github.com/theislab/single-cell-best-practices,612,83f34dabe86da58240a9d08e118c2f8a8dc99079,"Update raw_data_processing.md avoid missing piscem path during index generation",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920583) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920585) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920584) -theislab,single-cell-best-practices,theislab/single-cell-best-practices,611,16,50,134,FALSE,https://github.com/theislab/single-cell-best-practices,611,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,612,16,50,134,FALSE,https://github.com/theislab/single-cell-best-practices,612,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) * scATAC_pp @@ -369,7 +373,7 @@ Co-authored-by: xlancelottx Co-authored-by: zethson Co-authored-by: Anna Schaar ",[![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,74,3,0,9,FALSE,https://github.com/theislab/single-cell-transformer-papers,74,NA,NA,NA -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1277,30,21,436,FALSE,https://github.com/theislab/single-cell-tutorial,1277,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1281,30,21,437,FALSE,https://github.com/theislab/single-cell-tutorial,1281,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,3,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,3,NA,NA,NA theislab,spapros,theislab/spapros,21,3,15,5,FALSE,https://github.com/theislab/spapros,21,642fb34d2ccbb1bb8730b239840bf1bfe06701f8,"[DEPENDABOT]: Bump importlib-resources from 5.12.0 to 6.1.1 in /docs @@ -409,4 +413,4 @@ theislab,transcription_factor_activity,theislab/transcription_factor_activity,1, theislab,trvaep,theislab/trvaep,9,3,0,4,FALSE,https://github.com/theislab/trvaep,9,NA,NA,NA theislab,unbalanced_monge_maps_single_cell,theislab/unbalanced_monge_maps_single_cell,1,0,0,0,FALSE,https://github.com/theislab/unbalanced_monge_maps_single_cell,1,NA,NA,NA theislab,zebrafish_bipolarity,theislab/zebrafish_bipolarity,1,4,0,1,FALSE,https://github.com/theislab/zebrafish_bipolarity,1,NA,NA,NA -theislab,zellkonverter,theislab/zellkonverter,125,5,21,24,FALSE,https://github.com/theislab/zellkonverter,125,0454711b673bad066f96a9f49f134c29d7b9d970,Set git credentials after checkout for pkgdown,[![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/8433074462) +theislab,zellkonverter,theislab/zellkonverter,126,5,21,24,FALSE,https://github.com/theislab/zellkonverter,126,0454711b673bad066f96a9f49f134c29d7b9d970,Set git credentials after checkout for pkgdown,[![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/8433074462)
theislab/single-cell-best-practices611612 16 50 134
theislab/single-cell-best-practices611612 16 50 134
theislab/single-cell-best-practices611612 16 50 134 theislab/cellrank 292 81415 36 @@ -125,9 +125,9 @@

GitHub Dashboard

theislab/scib261262 163839 56 d42f91 8 166 13 55bcbb
theislab/zellkonverter125126 5 21 24 045471
theislab/anndata2ri111715168b6c45
theislab/ehrapy 108 63940 14 27d854
theislab/ehrapy 108 63940 14 84d33c
theislab/ehrapy 108 63940 14 - - - - fa6087
theislab/ncem 96 6 216fd5
theislab/ncem 96 6 d03a07
theislab/moscot 89 34039 6 6ea9a1
theislab/moscot893396 + +939e91
theislab/pertpy 80 43027 15 - - -54b7f3 + + +193fa9
theislab/pertpy 80 43027 15d00c5f + + +54b7f3
theislab/pertpy 80 43027 15e8aef5d00c5f
theislab/destiny
theislab/hadge1819 3 12 5
theislab/hadge1819 3 12 5 5bf0cd
theislab/scanpydoc1263585dd21
theislab/graphcompass 11 1 7c4551
theislab/cellrank_notebooks 6 4 677784
theislab/moscot_notebooks6122bc71ed
theislab/ehrapy-datasets 5 2 0 0e7f7a5d4501b
theislab/transcription_factor_activity
theislab/single-cell-tutorial12771281 30 21436437
theislab/scarches theislab/dca 229 113231 67
theislab/sc-pert123124 6 6 10
theislab/anndata2ri11171616
theislab/chemCPA8586 5 8 22
theislab/single-cell-transformer-papers 74 3 0 9
theislab/cpa 72 41315 15
theislab/AutoGeneS 53 6 4 8
theislab/trVAE 53 7 2 11
theislab/scib-reproducibility 49 6 3 15
theislab/spatial_scog_workshop_2022 43 9 0 24
theislab/pseudodynamics 39 7 0 6
theislab/tcellmatch 37 9 3 7
theislab/deepflow 31 5 1 14
theislab/scArches-reproducibility 31 5 5 0
theislab/DeepRT 26 2 11 10
theislab/graph_abstraction 26 8 0 10
theislab/scvelo_notebooks 26 2 2 12
theislab/scTab 25 2 0 3
theislab/Covid_meta_analysis 24 8 2 11
theislab/interactive_plotting 21 4 11 7
theislab/mubind 19 3 30 0
theislab/scgen-reproducibility 17 4 5 8
theislab/cellrank_reproducibility 14 2 0 8
theislab/campa 13 4 5 4
theislab/DeepCollisionalCrossSection 13 5 1 6
theislab/scanpy-in-R 13 3 1 0
theislab/multicpa 12 2 1 2
theislab/multigrate 12 3 7 3
theislab/scanpydoc12645
theislab/MetaMap 11 1
theislab/moscot_notebooks6132
theislab/scatac_poisson_reproducibility 6 3 0 0
theislab/sfaira_tutorials 6 4 3 2
theislab/trVAE_reproducibility 6 3 2 5
theislab/2018_Angelidis 5 5 0 6
theislab/ehrapy-tutorials 5 3 3 2
theislab/flowVI 5 3 0 0
theislab/InterpretableAutoencoders 5 5 0 1
theislab/kbranches 5 7 0 0
theislab/scanpy-demo-czbiohub 5 5 0 5
theislab/2022_Tritschler_pancreas_cross_species4301
theislab/cellrank_reproducibility_preprint 4 0
theislab/2022_Tritschler_pancreas_cross_species3301
theislab/jump-cpg0016-segmentation 3 0 0 0
theislab/moscot_not 3 2 8 1
theislab/multires-consensus-clustering 3 4 9 0
theislab/nbconvertR 3 3 1 2
theislab/sc_analysis_template 3 3 0 0
theislab/singlecell_proteomics 3 5 6 3
theislab/ssl_in_scg 3 0 1 0
theislab/2020_iPS_Lung_Differentiation 2 5 0 2
theislab/2021_Aliluev_Tritschler_gut_HFD 2 4 0 1
theislab/augurpy 2 2 10 0
theislab/bartseq-pipeline 2 4 0 3
theislab/campa_ana 2 4 0 0
theislab/covid_macrophages_integration 2 5 0 4
theislab/epicardiods_analysis 2 2 1 0
theislab/flexible_priors 2 2 0 0
theislab/gut_lineage 2 3 0 3
theislab/HPA_reproducibility 2 3 0 1
theislab/HRCA-reproducibility 2 4 0 1
theislab/LineagePulse 2 5 0 0
theislab/moscot_benchmarks 2 2 1 0
theislab/multigrate_reproducibility 2 1 0 0
theislab/scanpy_squidpy_demo_2021 2 4 0 0
theislab/svaeligr 2 3 0 0
theislab/2021_PRMT7_regulates_Monocyte_Extravasation 1 4 0 2
theislab/astrocytes_reprogramming_analysis 1 5 0 0
theislab/autoencoderPS 1 3 0 2
theislab/bartSeq 1 5 1 5
theislab/bindome 1 3 5 1
theislab/countae 1 4 0 0
theislab/ehrapy-cli 1 3 0 0
theislab/ehrapy-site 1 2 0 0
theislab/ifcseq 1 3 0 1
theislab/interaction-tools 1 4 0 0
theislab/LungInjuryRegeneration 1 8 0 0
theislab/moscot-framework_reproducibility 1 2 1 0
theislab/pertpy-datasets 1 3 1 1
theislab/scPoli_legacy 1 5 0 0
theislab/spatial_atlas_ssl 1 2 0 0
theislab/tissue_reproducibility 1 3 0 0
theislab/unbalanced_monge_maps_single_cell 1 0 0 0
theislab/zebrafish_bipolarity 1 4 0 1
theislab/2015-grn-inference 0 1 0 0
theislab/2020_Inhibition_LTbetaR-signalling 0 4 0 3
theislab/2022_Bakhti_pancreas_Syt13 0 3 0 0
theislab/archmap_admin 0 2 0 0
theislab/archmap_doc 0 3 0 0
theislab/atlas-feature-selection-benchmark 0 2 0 0
theislab/collideseq_reproducibility 0 2 0 0
theislab/consensus-clustering-evaluation 0 4 0 0
theislab/dali 0 7 0 1
theislab/edgepy 0 3 0 0
theislab/ehrapy-reproducibility 0 2 0 0
theislab/ELS_analysis 0 2 0 0
theislab/GoBI_single_cell 0 3 0 0
theislab/hadge-reproducibility 0 2 0 0
theislab/icml_cbw_2022_clcvae 0 3 0 0
theislab/integraph 0 2 4 0
theislab/ipsc_ipd_analysis 0 3 0 0
theislab/LungAgingAtlas 0 5 0 0
theislab/masterpraktikum_ssl_segmentation 0 2 1 1
theislab/MetaMap-web 0 4 2 0
theislab/MRGR_stress_analysis 0 3 0 0
theislab/multicpa-reproducibility 0 2 0 0
theislab/organoid_dexamethason_stimulation 0 3 0 1
theislab/pancreas-targeted_pharmacology 0 7 0 2
theislab/pdac_analysis 0 1 0 0
theislab/reproducability_AutoGeneS 0 3 0 0
theislab/reproducibility_AutoGeneS 0 3 0 0
theislab/scanpy.org 0 7 1 0
theislab/scanpy_neighbors 0 3 0 1
theislab/scarches_notebooks 0 3 0 0
theislab/sc_ketamine_analysis 0 4 0 0
theislab/sfaira-portal 0 4 2 0
theislab/sfaira-site 0 4 0 0
theislab/sfaira_benchmarks 0 3 0 0
theislab/sfaira_extension 0 3 1 0
theislab/spapros-smk 0 2 0 1
theislab/spapros_reproducibility 0 1 0 0
theislab/tissue 0 3