diff --git a/README.md b/README.md index 30cf020..3177c8e 100644 --- a/README.md +++ b/README.md @@ -2,32 +2,32 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2023-10-24 12:06:04 UTC +2023-10-25 12:18:30 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 500 | 15 | 41 | 100 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290209) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290212) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290229) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290234) | 64cdab | -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 500 | 15 | 41 | 100 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 261 | 7 | 14 | 35 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) | 1287de | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 261 | 7 | 14 | 35 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6607073831) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6607119954) | c3ced6 | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 501 | 15 | 41 | 100 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290209) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290212) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290229) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290234) | 64cdab | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 501 | 15 | 41 | 100 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 261 | 7 | 12 | 35 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) | 1287de | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 261 | 7 | 12 | 35 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6627302483) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6627302526) | f3a6a0 | | [theislab/scib](https://github.com/theislab/scib) | 238 | 17 | 27 | 48 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) | ed3e28 | -| [theislab/scgen](https://github.com/theislab/scgen) | 225 | 10 | 18 | 49 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 130 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086700) [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6620470494) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086704) [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086698) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086702) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086701) | 55bcbb | +| [theislab/scgen](https://github.com/theislab/scgen) | 225 | 10 | 19 | 49 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 130 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086700) [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6633940391) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086704) [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086698) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086702) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086701) | 55bcbb | | [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 105 | 6 | 16 | 21 | [![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/6532217835) | 253179 | | [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 99 | 6 | 14 | 14 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/6623718520) | 973355 | | [theislab/ncem](https://github.com/theislab/ncem) | 92 | 6 | 23 | 11 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | | [theislab/ncem](https://github.com/theislab/ncem) | 92 | 6 | 23 | 11 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6119220837) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6119220836) | 4137a3 | | [theislab/moscot](https://github.com/theislab/moscot) | 66 | 4 | 35 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/6456571831) | b23360 | | [theislab/destiny](https://github.com/theislab/destiny) | 64 | 5 | 29 | 11 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/3288756982) | 8f083f | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 54 | 5 | 37 | 8 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6577871865) | 00d875 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 54 | 5 | 37 | 8 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 54 | 5 | 36 | 8 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6626921414) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6626921429) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6626921433) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6626921425) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6626921439) | 5c3320 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 54 | 5 | 36 | 8 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | | [theislab/pertpy](https://github.com/theislab/pertpy) | 52 | 4 | 23 | 10 | [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) | \” title=“Revert”Deleted JaxscgenPlot”“\>404835 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 52 | 4 | 23 | 10 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6625161088) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6625161068) [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6625161067) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6625161072) | 6f4764 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 52 | 4 | 23 | 10 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6631586090) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6631586087) [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6631586093) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6631586091) | d3c0db | | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 41 | 7 | 14 | 26 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825767) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825761) | 11ffbb | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Labeler/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3209792663) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3213182368) | e78395 | -| [theislab/spapros](https://github.com/theislab/spapros) | 19 | 3 | 14 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6621092786) | c4c090 | +| [theislab/spapros](https://github.com/theislab/spapros) | 19 | 3 | 14 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6634539392) | c4c090 | | [theislab/spapros](https://github.com/theislab/spapros) | 19 | 3 | 14 | 5 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/6617803188) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/6617803200) | ee4ca5 | | [theislab/geome](https://github.com/theislab/geome) | 13 | 3 | 5 | 4 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 5 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/6623716838) | 8ada46 | @@ -38,7 +38,7 @@ GitHub Dashboard | [theislab/bindome](https://github.com/theislab/bindome) | 1 | 3 | 5 | 1 | [![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) | 3cb12b | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 1 | 0 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369762) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369764) | 96c815 | | [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 0 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6626485469) | 18a7b2 | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 0 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6640033330) | c06d67 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/6140914377) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/6140914379) | 1f47f4 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | @@ -47,17 +47,17 @@ GitHub Dashboard | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1176 | 30 | 19 | 425 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1177 | 30 | 19 | 425 | | [theislab/scvelo](https://github.com/theislab/scvelo) | 357 | 15 | 78 | 98 | -| [theislab/scarches](https://github.com/theislab/scarches) | 284 | 14 | 30 | 45 | +| [theislab/scarches](https://github.com/theislab/scarches) | 284 | 14 | 31 | 45 | | [theislab/dca](https://github.com/theislab/dca) | 224 | 11 | 30 | 67 | | [theislab/paga](https://github.com/theislab/paga) | 170 | 10 | 21 | 29 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 169 | 8 | 106 | 22 | | [theislab/kBET](https://github.com/theislab/kBET) | 137 | 9 | 8 | 23 | -| [theislab/scCODA](https://github.com/theislab/scCODA) | 120 | 9 | 9 | 21 | +| [theislab/scCODA](https://github.com/theislab/scCODA) | 120 | 9 | 10 | 21 | | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 110 | 6 | 5 | 9 | -| [theislab/chemCPA](https://github.com/theislab/chemCPA) | 71 | 5 | 9 | 16 | -| [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 52 | 6 | 7 | 8 | +| [theislab/chemCPA](https://github.com/theislab/chemCPA) | 71 | 5 | 5 | 16 | +| [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 52 | 6 | 3 | 8 | | [theislab/trVAE](https://github.com/theislab/trVAE) | 52 | 7 | 2 | 8 | | [theislab/cpa](https://github.com/theislab/cpa) | 50 | 4 | 8 | 11 | | [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 43 | 6 | 2 | 11 | @@ -69,7 +69,7 @@ GitHub Dashboard | [theislab/DeepRT](https://github.com/theislab/DeepRT) | 26 | 2 | 11 | 10 | | [theislab/graph_abstraction](https://github.com/theislab/graph_abstraction) | 26 | 8 | 0 | 10 | | [theislab/Covid_meta_analysis](https://github.com/theislab/Covid_meta_analysis) | 24 | 8 | 2 | 11 | -| [theislab/scvelo_notebooks](https://github.com/theislab/scvelo_notebooks) | 23 | 2 | 2 | 12 | +| [theislab/scvelo_notebooks](https://github.com/theislab/scvelo_notebooks) | 24 | 2 | 2 | 12 | | [theislab/interactive_plotting](https://github.com/theislab/interactive_plotting) | 20 | 4 | 10 | 7 | | [theislab/mubind](https://github.com/theislab/mubind) | 18 | 2 | 30 | 0 | | [theislab/scgen-reproducibility](https://github.com/theislab/scgen-reproducibility) | 17 | 4 | 5 | 8 | @@ -83,7 +83,7 @@ GitHub Dashboard | [theislab/diffxpy_tutorials](https://github.com/theislab/diffxpy_tutorials) | 10 | 8 | 4 | 2 | | [theislab/GWAS-scRNAseq-Integration](https://github.com/theislab/GWAS-scRNAseq-Integration) | 10 | 5 | 0 | 12 | | [theislab/scAnalysisTutorial](https://github.com/theislab/scAnalysisTutorial) | 10 | 3 | 0 | 3 | -| [theislab/scPoli_reproduce](https://github.com/theislab/scPoli_reproduce) | 10 | 3 | 2 | 3 | +| [theislab/scPoli_reproduce](https://github.com/theislab/scPoli_reproduce) | 10 | 3 | 1 | 3 | | [theislab/enrichment_analysis_celltype](https://github.com/theislab/enrichment_analysis_celltype) | 9 | 5 | 0 | 4 | | [theislab/hadge](https://github.com/theislab/hadge) | 9 | 2 | 3 | 3 | | [theislab/moslin](https://github.com/theislab/moslin) | 9 | 1 | 0 | 1 | @@ -108,7 +108,7 @@ GitHub Dashboard | [theislab/cpa-reproducibility](https://github.com/theislab/cpa-reproducibility) | 6 | 3 | 0 | 1 | | [theislab/IMPA](https://github.com/theislab/IMPA) | 6 | 1 | 0 | 1 | | [theislab/intercode](https://github.com/theislab/intercode) | 6 | 3 | 1 | 1 | -| [theislab/mouse_cross-condition_pancreatic_islet_atlas](https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas) | 6 | 2 | 0 | 2 | +| [theislab/mouse_cross-condition_pancreatic_islet_atlas](https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas) | 6 | 2 | 0 | 3 | | [theislab/sfaira_tutorials](https://github.com/theislab/sfaira_tutorials) | 6 | 4 | 3 | 2 | | [theislab/trVAE_reproducibility](https://github.com/theislab/trVAE_reproducibility) | 6 | 3 | 2 | 4 | | [theislab/2018_Angelidis](https://github.com/theislab/2018_Angelidis) | 5 | 5 | 0 | 6 | diff --git a/index.html b/index.html index 63034b3..f573ba7 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

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- + diff --git a/repos.csv b/repos.csv index 4e68c69..356cfcd 100644 --- a/repos.csv +++ b/repos.csv @@ -8,7 +8,7 @@ theislab,2021_Aliluev_Tritschler_gut_HFD,theislab/2021_Aliluev_Tritschler_gut_HF theislab,2021_PRMT7_regulates_Monocyte_Extravasation,theislab/2021_PRMT7_regulates_Monocyte_Extravasation,1,4,0,2,FALSE,https://github.com/theislab/2021_PRMT7_regulates_Monocyte_Extravasation,1,NA,NA,NA theislab,2022_Bakhti_pancreas_Syt13,theislab/2022_Bakhti_pancreas_Syt13,0,3,0,0,FALSE,https://github.com/theislab/2022_Bakhti_pancreas_Syt13,0,NA,NA,NA theislab,2022_Tritschler_pancreas_cross_species,theislab/2022_Tritschler_pancreas_cross_species,2,3,0,1,FALSE,https://github.com/theislab/2022_Tritschler_pancreas_cross_species,2,NA,NA,NA -theislab,AutoGeneS,theislab/AutoGeneS,52,6,7,8,FALSE,https://github.com/theislab/AutoGeneS,52,NA,NA,NA +theislab,AutoGeneS,theislab/AutoGeneS,52,6,3,8,FALSE,https://github.com/theislab/AutoGeneS,52,NA,NA,NA theislab,Covid_meta_analysis,theislab/Covid_meta_analysis,24,8,2,11,FALSE,https://github.com/theislab/Covid_meta_analysis,24,NA,NA,NA theislab,DeepCollisionalCrossSection,theislab/DeepCollisionalCrossSection,12,5,1,6,FALSE,https://github.com/theislab/DeepCollisionalCrossSection,12,NA,NA,NA theislab,DeepRT,theislab/DeepRT,26,2,11,10,FALSE,https://github.com/theislab/DeepRT,26,NA,NA,NA @@ -60,16 +60,8 @@ Important cookietemple template update 2.1.1 released!",[![](https://github.com/ theislab,bindome,theislab/bindome,1,3,5,1,FALSE,https://github.com/theislab/bindome,1,3cb12b5e3c71749003718d8d1768e3b9790d8544,minor fixes,[![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) theislab,campa,theislab/campa,11,4,4,4,FALSE,https://github.com/theislab/campa,11,NA,NA,NA theislab,campa_ana,theislab/campa_ana,2,4,0,0,FALSE,https://github.com/theislab/campa_ana,2,NA,NA,NA -theislab,cellrank,theislab/cellrank,261,7,14,35,FALSE,https://github.com/theislab/cellrank,261,1287deed96ee4fa49aa50e948688e75c3d173870,Change core development order,[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) -theislab,cellrank,theislab/cellrank,261,7,14,35,FALSE,https://github.com/theislab/cellrank,261,c3ced63ead2672f5fce3bf00df2d61c4653eeafa,"Fix/anndata serialization (#1122) - -* Fix AnnData I/O for Lineage, bump version - -* Remove variable - -* Add test - -* Add `zarr` to test reqs",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6607073831) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6607119954) +theislab,cellrank,theislab/cellrank,261,7,12,35,FALSE,https://github.com/theislab/cellrank,261,1287deed96ee4fa49aa50e948688e75c3d173870,Change core development order,[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) +theislab,cellrank,theislab/cellrank,261,7,12,35,FALSE,https://github.com/theislab/cellrank,261,f3a6a0e0176274faa230cfc166c3b462d7ce8672,expose pygam model penalties via spline_kwargs (#1132),[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6627302483) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6627302526) theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,1,0,0,0,FALSE,https://github.com/theislab/cellrank2_reproducibility,1,96c815f78ecbb75d9dc12f0ee995851acf314add,"Add `lint.yml` (#40) Adds CI to check linting on push to `main` or when opeing a PR to merge @@ -77,7 +69,7 @@ into `main`.",[![](https://github.com/theislab/cellrank2_reproducibility/workflo theislab,cellrank_notebooks,theislab/cellrank_notebooks,6,4,2,5,FALSE,https://github.com/theislab/cellrank_notebooks,6,6777840bcc146924d208c0b9b02677da63620805,[ci skip] Fix pepy badge,[![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6607087564) theislab,cellrank_reproducibility,theislab/cellrank_reproducibility,13,2,0,7,FALSE,https://github.com/theislab/cellrank_reproducibility,13,NA,NA,NA theislab,cellrank_reproducibility_preprint,theislab/cellrank_reproducibility_preprint,4,2,0,0,FALSE,https://github.com/theislab/cellrank_reproducibility_preprint,4,NA,NA,NA -theislab,chemCPA,theislab/chemCPA,71,5,9,16,FALSE,https://github.com/theislab/chemCPA,71,NA,NA,NA +theislab,chemCPA,theislab/chemCPA,71,5,5,16,FALSE,https://github.com/theislab/chemCPA,71,NA,NA,NA theislab,collideseq_reproducibility,theislab/collideseq_reproducibility,0,2,0,0,FALSE,https://github.com/theislab/collideseq_reproducibility,0,NA,NA,NA theislab,consensus-clustering-evaluation,theislab/consensus-clustering-evaluation,0,4,0,0,FALSE,https://github.com/theislab/consensus-clustering-evaluation,0,NA,NA,NA theislab,countae,theislab/countae,1,4,0,0,FALSE,https://github.com/theislab/countae,1,NA,NA,NA @@ -93,24 +85,15 @@ theislab,diffxpy,theislab/diffxpy,169,8,106,22,FALSE,https://github.com/theislab theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA theislab,disent,theislab/disent,5,3,0,0,FALSE,https://github.com/theislab/disent,5,NA,NA,NA theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA -theislab,ehrapy,theislab/ehrapy,54,5,37,8,FALSE,https://github.com/theislab/ehrapy,54,00d875807092f8acd56c058e44347654e94bd872,"Small edits (#599) +theislab,ehrapy,theislab/ehrapy,54,5,36,8,FALSE,https://github.com/theislab/ehrapy,54,5c33204f95235f7caa2d9d81839ed54bc1b59a2f,"[pre-commit.ci] pre-commit autoupdate (#600) -* small edits - -* think should fix pp encode docstring examples - -* docstring typos - -* the : after first sentence of Returns appears to overwrite and misplace Return Type so make a ; instead - -* readability improvement but not consistent fix of pp.pca docstring - -* readability improvement of louvain. might make more consistent alltogether? - -* : interfered with Return Type formating so removed here to improve readability +updates: +- [github.com/psf/black: 23.9.1 → 23.10.0](https://github.com/psf/black/compare/23.9.1...23.10.0) +- [github.com/astral-sh/ruff-pre-commit: v0.0.292 → v0.1.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.0.292...v0.1.1) +- [github.com/pre-commit/mirrors-mypy: v1.6.0 → v1.6.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.6.0...v1.6.1) -* enforced changes by black",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6577871865) -theislab,ehrapy,theislab/ehrapy,54,5,37,8,FALSE,https://github.com/theislab/ehrapy,54,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6626921414) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6626921429) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6626921433) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6626921425) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6626921439) +theislab,ehrapy,theislab/ehrapy,54,5,36,8,FALSE,https://github.com/theislab/ehrapy,54,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) theislab,ehrapy-cli,theislab/ehrapy-cli,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-cli,1,NA,NA,NA @@ -127,7 +110,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,7,4,0,1,FALSE,http theislab,geome,theislab/geome,13,3,5,4,FALSE,https://github.com/theislab/geome,13,5bf0cd07b2ea7fa224a37f69232542a9e686c5bf,"Merge pull request #31 from theislab/template-update Automated template update from cookiecutter-scverse",[![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) -theislab,gh-dashboard,theislab/gh-dashboard,0,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,0,18a7b27490cd5b439bd26c754f3f31ea4a68e3b3,[status] 2023-10-23 12:09:18 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6626485469) +theislab,gh-dashboard,theislab/gh-dashboard,0,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,0,c06d6708c368030a6129e40bb9de0e0e4fdfc6fd,[status] 2023-10-24 12:07:50 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6640033330) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,greatpy,theislab/greatpy,8,3,4,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA theislab,gut_lineage,theislab/gut_lineage,2,3,0,3,FALSE,https://github.com/theislab/gut_lineage,2,NA,NA,NA @@ -176,7 +159,7 @@ theislab,moscot_notebooks,theislab/moscot_notebooks,6,1,4,2,FALSE,https://github small fixes for warnings and function calls",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/6607099059) theislab,moslin,theislab/moslin,9,1,0,1,FALSE,https://github.com/theislab/moslin,9,NA,NA,NA -theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,6,2,0,2,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,6,NA,NA,NA +theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,6,2,0,3,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,6,NA,NA,NA theislab,mubind,theislab/mubind,18,2,30,0,FALSE,https://github.com/theislab/mubind,18,NA,NA,NA theislab,multicpa,theislab/multicpa,12,2,0,2,FALSE,https://github.com/theislab/multicpa,12,NA,NA,NA theislab,multicpa-reproducibility,theislab/multicpa-reproducibility,0,2,0,0,FALSE,https://github.com/theislab/multicpa-reproducibility,0,NA,NA,NA @@ -198,14 +181,22 @@ theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,3,3,0, theislab,pertpy,theislab/pertpy,52,4,23,10,FALSE,https://github.com/theislab/pertpy,52,404835c82f9a3d943b85973c10130303d090839d,"Revert ""Deleted JaxscgenPlot"" This reverts commit 161fc137c5a23320a5799a22cd4d7212b550bca9.",[![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) -theislab,pertpy,theislab/pertpy,52,4,23,10,FALSE,https://github.com/theislab/pertpy,52,6f4764d1267a9449ffd138430cd7c101756a482d,"[pre-commit.ci] pre-commit autoupdate (#410) +theislab,pertpy,theislab/pertpy,52,4,23,10,FALSE,https://github.com/theislab/pertpy,52,d3c0db36aa78260d56bb418a75cd540e7da2590d,"Fixed set_fdr for tascCODA models (#411) -updates: -- [github.com/psf/black: 23.9.1 → 23.10.0](https://github.com/psf/black/compare/23.9.1...23.10.0) -- [github.com/astral-sh/ruff-pre-commit: v0.0.292 → v0.1.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.0.292...v0.1.1) -- [github.com/pre-commit/mirrors-mypy: v1.6.0 → v1.6.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.6.0...v1.6.1) +* Fixed set_fdr for tascCODA models + +* [pre-commit.ci] auto fixes from pre-commit.com hooks + +for more information, see https://pre-commit.ci + +* Update pertpy/tools/_coda/_base_coda.py + +Co-authored-by: Lukas Heumos + +--------- -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6625161088) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6625161068) [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6625161067) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6625161072) +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> +Co-authored-by: Lukas Heumos ",[![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6631586090) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6631586087) [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6631586093) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6631586091) theislab,pertpy-datasets,theislab/pertpy-datasets,1,3,0,1,FALSE,https://github.com/theislab/pertpy-datasets,1,NA,NA,NA theislab,pertpy-tutorials,theislab/pertpy-tutorials,4,4,3,6,FALSE,https://github.com/theislab/pertpy-tutorials,4,NA,NA,NA theislab,perturbation-metrics,theislab/perturbation-metrics,1,2,1,0,FALSE,https://github.com/theislab/perturbation-metrics,1,NA,NA,NA @@ -216,10 +207,10 @@ theislab,sc-best-practices-ce,theislab/sc-best-practices-ce,5,7,2,3,FALSE,https: theislab,sc-pert,theislab/sc-pert,110,6,5,9,FALSE,https://github.com/theislab/sc-pert,110,NA,NA,NA theislab,scAnalysisTutorial,theislab/scAnalysisTutorial,10,3,0,3,FALSE,https://github.com/theislab/scAnalysisTutorial,10,NA,NA,NA theislab,scArches-reproducibility,theislab/scArches-reproducibility,29,5,5,2,FALSE,https://github.com/theislab/scArches-reproducibility,29,NA,NA,NA -theislab,scCODA,theislab/scCODA,120,9,9,21,FALSE,https://github.com/theislab/scCODA,120,NA,NA,NA +theislab,scCODA,theislab/scCODA,120,9,10,21,FALSE,https://github.com/theislab/scCODA,120,NA,NA,NA theislab,scCODA_reproducibility,theislab/scCODA_reproducibility,7,5,0,1,FALSE,https://github.com/theislab/scCODA_reproducibility,7,NA,NA,NA theislab,scPoli_legacy,theislab/scPoli_legacy,1,5,0,0,FALSE,https://github.com/theislab/scPoli_legacy,1,NA,NA,NA -theislab,scPoli_reproduce,theislab/scPoli_reproduce,10,3,2,3,FALSE,https://github.com/theislab/scPoli_reproduce,10,NA,NA,NA +theislab,scPoli_reproduce,theislab/scPoli_reproduce,10,3,1,3,FALSE,https://github.com/theislab/scPoli_reproduce,10,NA,NA,NA theislab,scTab,theislab/scTab,9,2,0,2,FALSE,https://github.com/theislab/scTab,9,NA,NA,NA theislab,sc_analysis_template,theislab/sc_analysis_template,3,3,0,0,FALSE,https://github.com/theislab/sc_analysis_template,3,NA,NA,NA theislab,sc_ketamine_analysis,theislab/sc_ketamine_analysis,0,4,0,0,FALSE,https://github.com/theislab/sc_ketamine_analysis,0,NA,NA,NA @@ -232,24 +223,24 @@ theislab,scanpy_squidpy_demo_2021,theislab/scanpy_squidpy_demo_2021,2,4,0,0,FALS theislab,scanpydoc,theislab/scanpydoc,12,6,3,5,FALSE,https://github.com/theislab/scanpydoc,12,8ada46ab08cd66e24a6d15398c73da6acd1cb16a,"[pre-commit.ci] pre-commit autoupdate (#98) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/6623716838) -theislab,scarches,theislab/scarches,284,14,30,45,FALSE,https://github.com/theislab/scarches,284,NA,NA,NA +theislab,scarches,theislab/scarches,284,14,31,45,FALSE,https://github.com/theislab/scarches,284,NA,NA,NA theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,5,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,5,NA,NA,NA -theislab,scgen,theislab/scgen,225,10,18,49,FALSE,https://github.com/theislab/scgen,225,d79e1f04233c30f9a4eb5b8d57718127909807d7,Merge pull request #87 from theislab/batch_corr_labels,[![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) +theislab,scgen,theislab/scgen,225,10,19,49,FALSE,https://github.com/theislab/scgen,225,d79e1f04233c30f9a4eb5b8d57718127909807d7,Merge pull request #87 from theislab/batch_corr_labels,[![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) theislab,scgen-reproducibility,theislab/scgen-reproducibility,17,4,5,8,FALSE,https://github.com/theislab/scgen-reproducibility,17,NA,NA,NA theislab,scib,theislab/scib,238,17,27,48,FALSE,https://github.com/theislab/scib,NA,ed3e2846414ca1e3dc07552c0eef1e68d82230d4,Bump version: 1.1.3 → 1.1.4,[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) theislab,scib-pipeline,theislab/scib-pipeline,41,7,14,26,FALSE,https://github.com/theislab/scib-pipeline,41,1180bcb35829d6d2984202268b4d1d11c511e20c,Merge branch 'fix/igraph_dependency' into rpy2_unpin,[![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) theislab,scib-reproducibility,theislab/scib-reproducibility,43,6,2,11,FALSE,https://github.com/theislab/scib-reproducibility,43,NA,NA,NA theislab,scvelo,theislab/scvelo,357,15,78,98,FALSE,https://github.com/theislab/scvelo,357,NA,NA,NA -theislab,scvelo_notebooks,theislab/scvelo_notebooks,23,2,2,12,FALSE,https://github.com/theislab/scvelo_notebooks,23,NA,NA,NA -theislab,sfaira,theislab/sfaira,130,8,166,13,FALSE,https://github.com/theislab/sfaira,130,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086700) [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6620470494) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086704) [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086698) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086702) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086701) +theislab,scvelo_notebooks,theislab/scvelo_notebooks,24,2,2,12,FALSE,https://github.com/theislab/scvelo_notebooks,24,NA,NA,NA +theislab,sfaira,theislab/sfaira,130,8,166,13,FALSE,https://github.com/theislab/sfaira,130,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086700) [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6633940391) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086704) [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086698) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086702) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6573086701) theislab,sfaira-portal,theislab/sfaira-portal,0,4,2,0,FALSE,https://github.com/theislab/sfaira-portal,0,NA,NA,NA theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theislab/sfaira-site,0,NA,NA,NA theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,3,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA -theislab,single-cell-best-practices,theislab/single-cell-best-practices,500,15,41,100,FALSE,https://github.com/theislab/single-cell-best-practices,500,64cdabb5a3a1cd5981adcfd19cbfa9c0dabb7560,Fix typo,[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290209) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290212) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290229) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290234) -theislab,single-cell-best-practices,theislab/single-cell-best-practices,500,15,41,100,FALSE,https://github.com/theislab/single-cell-best-practices,500,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,501,15,41,100,FALSE,https://github.com/theislab/single-cell-best-practices,501,64cdabb5a3a1cd5981adcfd19cbfa9c0dabb7560,Fix typo,[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290209) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290212) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290229) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290234) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,501,15,41,100,FALSE,https://github.com/theislab/single-cell-best-practices,501,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) * scATAC_pp @@ -363,11 +354,11 @@ Signed-off-by: zethson Co-authored-by: xlancelottx Co-authored-by: zethson Co-authored-by: Anna Schaar ",[![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1176,30,19,425,FALSE,https://github.com/theislab/single-cell-tutorial,1176,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1177,30,19,425,FALSE,https://github.com/theislab/single-cell-tutorial,1177,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,3,4,4,3,FALSE,https://github.com/theislab/singlecell_proteomics,3,NA,NA,NA theislab,spapros,theislab/spapros,19,3,14,5,FALSE,https://github.com/theislab/spapros,19,c4c0903758ecb1acd0e16c1d227e59e8be1e28de,"Merge pull request #288 from theislab/development -Mention python package in docs",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6621092786) +Mention python package in docs",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6634539392) theislab,spapros,theislab/spapros,19,3,14,5,FALSE,https://github.com/theislab/spapros,19,ee4ca59c183efb6ba9e809261efdc9d0309a57b0,"[DEPENDABOT]: Bump actions/checkout from 3.0.2 to 4.1.1 Bumps [actions/checkout](https://github.com/actions/checkout) from 3.0.2 to 4.1.1.
theislab/single-cell-best-practices500501 15 41 100
theislab/single-cell-best-practices500501 15 41 100 theislab/cellrank 261 71412 35 1287de theislab/cellrank 261 71412 35 -c3ced6 +f3a6a0
theislab/scib theislab/scgen 225 101819 49 d79e1f 166 13 - + @@ -203,16 +203,20 @@

GitHub Dashboard

theislab/ehrapy 54 53736 800d875 + + + +5c3320
theislab/ehrapy 54 53736 8 84d33c 4 23 10 - - -6f4764 + + +d3c0db
theislab/scib-pipeline 14 5 - c4c090
2 0 018a7b2c06d67
theislab/idtrack
theislab/single-cell-tutorial11761177 30 19 425 theislab/scarches 284 143031 45
theislab/scCODA 120 9910 21
theislab/chemCPA 71 595 16
theislab/AutoGeneS 52 673 8
theislab/scvelo_notebooks2324 2 2 12 theislab/scPoli_reproduce 10 321 3
6 2 023
theislab/sfaira_tutorials