From 6d0ee5dbe2c4c4c9e3c857868f1bc234b1475e50 Mon Sep 17 00:00:00 2001 From: GitHub Actions Date: Thu, 21 Mar 2024 12:13:59 +0000 Subject: [PATCH] [status] 2024-03-21 12:13:59 UTC --- README.md | 37 +++++++++++---------- index.html | 94 ++++++++++++++++++++++++------------------------------ repos.csv | 49 ++++++++++------------------ 3 files changed, 77 insertions(+), 103 deletions(-) diff --git a/README.md b/README.md index 4d05d90..45ae22e 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-03-20 12:09:50 UTC +2024-03-21 12:12:28 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| @@ -10,24 +10,23 @@ GitHub Dashboard | [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 609 | 16 | 50 | 134 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920583) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920585) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920584) | 83f34d | | [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 609 | 16 | 50 | 134 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | | [theislab/scvelo](https://github.com/theislab/scvelo) | 382 | 13 | 55 | 100 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317739547) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317739551) [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 290 | 8 | 13 | 36 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8319331404) [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8317773998) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8319389141) | 906957 | -| [theislab/scib](https://github.com/theislab/scib) | 259 | 16 | 37 | 56 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/7468185443) | d42f91 | -| [theislab/scgen](https://github.com/theislab/scgen) | 242 | 9 | 19 | 50 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 132 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/8351789062) | 55bcbb | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 290 | 8 | 14 | 36 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8319331404) [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8317773998) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8319389141) | 906957 | +| [theislab/scib](https://github.com/theislab/scib) | 259 | 16 | 38 | 56 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/7468185443) | d42f91 | +| [theislab/scgen](https://github.com/theislab/scgen) | 243 | 9 | 19 | 50 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 132 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/8367556062) | 55bcbb | | [theislab/sfaira](https://github.com/theislab/sfaira) | 132 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 132 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | -| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 123 | 5 | 22 | 24 | [![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/7558891230) | 9d557f | +| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 123 | 5 | 23 | 24 | [![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/7558891230) | 9d557f | | [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 111 | 7 | 15 | 16 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/8339966656) | b9f767 | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 106 | 6 | 39 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8357766702) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8357766704) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8357766701) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8357766700) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8357766703) | 273f62 | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 106 | 6 | 39 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 106 | 6 | 39 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7260760638) | ea6b44 | -| [theislab/ncem](https://github.com/theislab/ncem) | 96 | 6 | 24 | 13 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | -| [theislab/ncem](https://github.com/theislab/ncem) | 96 | 6 | 24 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | -| [theislab/moscot](https://github.com/theislab/moscot) | 88 | 3 | 41 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/8263290173) | 6ea9a1 | -| [theislab/moscot](https://github.com/theislab/moscot) | 88 | 3 | 41 | 6 | [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/8355530598) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/8355530599) | a5187c | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 79 | 4 | 28 | 15 | [![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446183) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446170) [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446165) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446171) | 54b7f3 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 79 | 4 | 28 | 15 | [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8347601812) [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8347601801) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8347601802) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8347601810) | 80ef0f | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 79 | 4 | 28 | 15 | [![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) | d00c5f | +| [theislab/ncem](https://github.com/theislab/ncem) | 96 | 6 | 25 | 13 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | +| [theislab/ncem](https://github.com/theislab/ncem) | 96 | 6 | 25 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | +| [theislab/moscot](https://github.com/theislab/moscot) | 88 | 3 | 43 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/8263290173) | 6ea9a1 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 80 | 4 | 28 | 15 | [![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446183) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446170) [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446165) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446171) | 54b7f3 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 80 | 4 | 28 | 15 | [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8347601812) [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8347601801) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8347601802) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8347601810) | 80ef0f | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 80 | 4 | 28 | 15 | [![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) | d00c5f | | [theislab/destiny](https://github.com/theislab/destiny) | 67 | 5 | 31 | 12 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) | 300eb2 | | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 54 | 7 | 16 | 26 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825767) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825761) | 11ffbb | @@ -43,7 +42,7 @@ GitHub Dashboard | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 5 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 4 | 1 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/8315825726) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/8315825728) | f5c767 | | [theislab/ehrdata](https://github.com/theislab/ehrdata) | 3 | 3 | 0 | 1 | [![](https://github.com/theislab/ehrdata/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/8334566936) [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/8334566937) | 7c0ffa | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/8358526059) | 6f9c2e | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/8374553995) | 7a141d | | [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | @@ -53,17 +52,17 @@ GitHub Dashboard | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1272 | 30 | 21 | 437 | -| [theislab/scarches](https://github.com/theislab/scarches) | 299 | 14 | 36 | 48 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1275 | 30 | 21 | 438 | +| [theislab/scarches](https://github.com/theislab/scarches) | 299 | 14 | 35 | 48 | | [theislab/dca](https://github.com/theislab/dca) | 229 | 11 | 32 | 67 | | [theislab/paga](https://github.com/theislab/paga) | 182 | 10 | 21 | 31 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 169 | 6 | 106 | 23 | | [theislab/kBET](https://github.com/theislab/kBET) | 138 | 8 | 7 | 23 | | [theislab/scCODA](https://github.com/theislab/scCODA) | 128 | 9 | 8 | 23 | | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 123 | 6 | 6 | 10 | -| [theislab/chemCPA](https://github.com/theislab/chemCPA) | 85 | 5 | 7 | 22 | +| [theislab/chemCPA](https://github.com/theislab/chemCPA) | 85 | 5 | 8 | 22 | | [theislab/cpa](https://github.com/theislab/cpa) | 72 | 4 | 16 | 15 | -| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 64 | 3 | 0 | 9 | +| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 66 | 3 | 0 | 9 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 53 | 6 | 4 | 8 | | [theislab/trVAE](https://github.com/theislab/trVAE) | 52 | 7 | 2 | 11 | | [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 49 | 6 | 3 | 15 | @@ -142,7 +141,7 @@ GitHub Dashboard | [theislab/multires-consensus-clustering](https://github.com/theislab/multires-consensus-clustering) | 3 | 4 | 9 | 0 | | [theislab/nbconvertR](https://github.com/theislab/nbconvertR) | 3 | 3 | 1 | 2 | | [theislab/sc_analysis_template](https://github.com/theislab/sc_analysis_template) | 3 | 3 | 0 | 0 | -| [theislab/singlecell_proteomics](https://github.com/theislab/singlecell_proteomics) | 3 | 5 | 5 | 3 | +| [theislab/singlecell_proteomics](https://github.com/theislab/singlecell_proteomics) | 3 | 5 | 6 | 3 | | [theislab/ssl_in_scg](https://github.com/theislab/ssl_in_scg) | 3 | 0 | 1 | 0 | | [theislab/2020_iPS_Lung_Differentiation](https://github.com/theislab/2020_iPS_Lung_Differentiation) | 2 | 5 | 0 | 2 | | [theislab/2021_Aliluev_Tritschler_gut_HFD](https://github.com/theislab/2021_Aliluev_Tritschler_gut_HFD) | 2 | 4 | 0 | 1 | diff --git a/index.html b/index.html index 25cae32..0359a4a 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

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Repos without Github Actions

- + diff --git a/repos.csv b/repos.csv index 093f0ef..3510eb1 100644 --- a/repos.csv +++ b/repos.csv @@ -58,7 +58,7 @@ theislab,batchglm,theislab/batchglm,26,3,46,9,FALSE,https://github.com/theislab/ theislab,bindome,theislab/bindome,1,3,5,1,FALSE,https://github.com/theislab/bindome,1,NA,NA,NA theislab,campa,theislab/campa,13,4,5,4,FALSE,https://github.com/theislab/campa,13,NA,NA,NA theislab,campa_ana,theislab/campa_ana,2,4,0,0,FALSE,https://github.com/theislab/campa_ana,2,NA,NA,NA -theislab,cellrank,theislab/cellrank,290,8,13,36,FALSE,https://github.com/theislab/cellrank,290,9069571a1806ba9336202ba8e580a12fbc6b6d1f,"Update state plotting (#1177) +theislab,cellrank,theislab/cellrank,290,8,14,36,FALSE,https://github.com/theislab/cellrank,290,9069571a1806ba9336202ba8e580a12fbc6b6d1f,"Update state plotting (#1177) * Update `TermStatesEstimator::_plot_discrete` @@ -82,7 +82,7 @@ theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,4,1,0,0,FA theislab,cellrank_notebooks,theislab/cellrank_notebooks,6,4,1,5,FALSE,https://github.com/theislab/cellrank_notebooks,6,6777840bcc146924d208c0b9b02677da63620805,[ci skip] Fix pepy badge,[![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) theislab,cellrank_reproducibility,theislab/cellrank_reproducibility,14,2,0,8,FALSE,https://github.com/theislab/cellrank_reproducibility,14,NA,NA,NA theislab,cellrank_reproducibility_preprint,theislab/cellrank_reproducibility_preprint,4,2,0,0,FALSE,https://github.com/theislab/cellrank_reproducibility_preprint,4,NA,NA,NA -theislab,chemCPA,theislab/chemCPA,85,5,7,22,FALSE,https://github.com/theislab/chemCPA,85,NA,NA,NA +theislab,chemCPA,theislab/chemCPA,85,5,8,22,FALSE,https://github.com/theislab/chemCPA,85,NA,NA,NA theislab,collideseq_reproducibility,theislab/collideseq_reproducibility,0,2,0,0,FALSE,https://github.com/theislab/collideseq_reproducibility,0,NA,NA,NA theislab,consensus-clustering-evaluation,theislab/consensus-clustering-evaluation,0,4,0,0,FALSE,https://github.com/theislab/consensus-clustering-evaluation,0,NA,NA,NA theislab,countae,theislab/countae,1,4,0,0,FALSE,https://github.com/theislab/countae,1,NA,NA,NA @@ -145,7 +145,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,9,4,0,1,FALSE,http theislab,geome,theislab/geome,15,3,4,4,FALSE,https://github.com/theislab/geome,15,5bf0cd07b2ea7fa224a37f69232542a9e686c5bf,"Merge pull request #31 from theislab/template-update Automated template update from cookiecutter-scverse",[![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) -theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,6f9c2ea6a426747108f57231d7d67b6e679b293a,[status] 2024-03-19 12:12:03 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/8358526059) +theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,7a141d8869ab9007252eb6b728a310f3c4f63f64,[status] 2024-03-20 12:11:22 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/8374553995) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,graphcompass,theislab/graphcompass,9,1,0,0,FALSE,https://github.com/theislab/graphcompass,9,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,8,3,4,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA @@ -174,24 +174,9 @@ theislab,jump-cpg0016-segmentation,theislab/jump-cpg0016-segmentation,3,0,0,0,FA theislab,kBET,theislab/kBET,138,8,7,23,FALSE,https://github.com/theislab/kBET,138,NA,NA,NA theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/kbranches,5,NA,NA,NA theislab,masterpraktikum_ssl_segmentation,theislab/masterpraktikum_ssl_segmentation,0,2,1,1,FALSE,https://github.com/theislab/masterpraktikum_ssl_segmentation,0,NA,NA,NA -theislab,moscot,theislab/moscot,88,3,41,6,FALSE,https://github.com/theislab/moscot,88,6ea9a1612b829aaa4a1c192210e340a9c08d4ac6,"fix bug in quad problem marginals (#666) +theislab,moscot,theislab/moscot,88,3,43,6,FALSE,https://github.com/theislab/moscot,88,6ea9a1612b829aaa4a1c192210e340a9c08d4ac6,"fix bug in quad problem marginals (#666) Co-authored-by: Dominik Klein ",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/8263290173) -theislab,moscot,theislab/moscot,88,3,41,6,FALSE,https://github.com/theislab/moscot,88,a5187c037f7137de7324348de886dc4ee7234000,"Added tests on passing marginals to `prepare` (#670) - -* added some tests and refactored a line - -* explicitly specify marginals if they are unbalanced or not - -* [pre-commit.ci] auto fixes from pre-commit.com hooks - -for more information, see https://pre-commit.ci - -* add tests and specify tolerances - ---------- - -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/8355530598) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/8355530599) theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,1,2,1,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,1,NA,NA,NA theislab,moscot_benchmarks,theislab/moscot_benchmarks,1,2,1,0,FALSE,https://github.com/theislab/moscot_benchmarks,1,NA,NA,NA theislab,moscot_not,theislab/moscot_not,3,2,8,1,FALSE,https://github.com/theislab/moscot_not,3,NA,NA,NA @@ -205,10 +190,10 @@ theislab,multigrate,theislab/multigrate,12,3,7,3,FALSE,https://github.com/theisl theislab,multigrate_reproducibility,theislab/multigrate_reproducibility,2,1,0,0,FALSE,https://github.com/theislab/multigrate_reproducibility,2,NA,NA,NA theislab,multires-consensus-clustering,theislab/multires-consensus-clustering,3,4,9,0,FALSE,https://github.com/theislab/multires-consensus-clustering,3,NA,NA,NA theislab,nbconvertR,theislab/nbconvertR,3,3,1,2,FALSE,https://github.com/theislab/nbconvertR,3,NA,NA,NA -theislab,ncem,theislab/ncem,96,6,24,13,FALSE,https://github.com/theislab/ncem,96,216fd576d1d1842234ceec300435a1dafcdf8b0c,"Merge pull request #154 from theislab/development +theislab,ncem,theislab/ncem,96,6,25,13,FALSE,https://github.com/theislab/ncem,96,216fd576d1d1842234ceec300435a1dafcdf8b0c,"Merge pull request #154 from theislab/development update docs and python versions",[![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) -theislab,ncem,theislab/ncem,96,6,24,13,FALSE,https://github.com/theislab/ncem,96,d03a0792b9ab6ea62d2715b57ce50fcf1a84967c,remove patsy dependency,[![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) +theislab,ncem,theislab/ncem,96,6,25,13,FALSE,https://github.com/theislab/ncem,96,d03a0792b9ab6ea62d2715b57ce50fcf1a84967c,remove patsy dependency,[![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) theislab,ncem_benchmarks,theislab/ncem_benchmarks,8,4,4,2,FALSE,https://github.com/theislab/ncem_benchmarks,8,NA,NA,NA theislab,ncem_tutorials,theislab/ncem_tutorials,10,4,5,0,FALSE,https://github.com/theislab/ncem_tutorials,10,NA,NA,NA theislab,neural_organoid_atlas,theislab/neural_organoid_atlas,9,4,2,1,FALSE,https://github.com/theislab/neural_organoid_atlas,9,NA,NA,NA @@ -217,13 +202,13 @@ theislab,paga,theislab/paga,182,10,21,31,FALSE,https://github.com/theislab/paga, theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,7,0,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,4,3,0,5,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,4,NA,NA,NA theislab,pdac_analysis,theislab/pdac_analysis,0,1,0,0,FALSE,https://github.com/theislab/pdac_analysis,0,NA,NA,NA -theislab,pertpy,theislab/pertpy,79,4,28,15,FALSE,https://github.com/theislab/pertpy,79,54b7f30d58905fa4e7ad83c4229281072e72b661,"Fix nox +theislab,pertpy,theislab/pertpy,80,4,28,15,FALSE,https://github.com/theislab/pertpy,80,54b7f30d58905fa4e7ad83c4229281072e72b661,"Fix nox Signed-off-by: zethson ",[![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446183) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446170) [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446165) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446171) -theislab,pertpy,theislab/pertpy,79,4,28,15,FALSE,https://github.com/theislab/pertpy,79,80ef0f0c8cfb889f11c61f3e157aa8d1c6f3b175,"Merge pull request #560 from theislab/feature/regression_classifier +theislab,pertpy,theislab/pertpy,80,4,28,15,FALSE,https://github.com/theislab/pertpy,80,80ef0f0c8cfb889f11c61f3e157aa8d1c6f3b175,"Merge pull request #560 from theislab/feature/regression_classifier Logistic regression support for the Discriminator Classifier",[![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8347601812) [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8347601801) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8347601802) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8347601810) -theislab,pertpy,theislab/pertpy,79,4,28,15,FALSE,https://github.com/theislab/pertpy,79,d00c5f9e7243d6b1984becf973509f5f8ae425fc,pre-commit,[![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) +theislab,pertpy,theislab/pertpy,80,4,28,15,FALSE,https://github.com/theislab/pertpy,80,d00c5f9e7243d6b1984becf973509f5f8ae425fc,pre-commit,[![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) theislab,pertpy-datasets,theislab/pertpy-datasets,1,3,1,1,FALSE,https://github.com/theislab/pertpy-datasets,1,NA,NA,NA theislab,pertpy-tutorials,theislab/pertpy-tutorials,4,4,2,7,FALSE,https://github.com/theislab/pertpy-tutorials,4,NA,NA,NA theislab,perturbation-metrics,theislab/perturbation-metrics,4,2,1,0,FALSE,https://github.com/theislab/perturbation-metrics,4,NA,NA,NA @@ -250,12 +235,12 @@ theislab,scanpy_squidpy_demo_2021,theislab/scanpy_squidpy_demo_2021,2,4,0,0,FALS theislab,scanpydoc,theislab/scanpydoc,12,6,3,5,FALSE,https://github.com/theislab/scanpydoc,12,bb52063ee40597b36bd79c6787ab0844823e4dc9,"[pre-commit.ci] pre-commit autoupdate (#142) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/8339964270) -theislab,scarches,theislab/scarches,299,14,36,48,FALSE,https://github.com/theislab/scarches,299,NA,NA,NA +theislab,scarches,theislab/scarches,299,14,35,48,FALSE,https://github.com/theislab/scarches,299,NA,NA,NA theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,6,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,6,NA,NA,NA -theislab,scgen,theislab/scgen,242,9,19,50,FALSE,https://github.com/theislab/scgen,242,d79e1f04233c30f9a4eb5b8d57718127909807d7,Merge pull request #87 from theislab/batch_corr_labels,[![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) +theislab,scgen,theislab/scgen,243,9,19,50,FALSE,https://github.com/theislab/scgen,243,d79e1f04233c30f9a4eb5b8d57718127909807d7,Merge pull request #87 from theislab/batch_corr_labels,[![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) theislab,scgen-reproducibility,theislab/scgen-reproducibility,17,4,5,8,FALSE,https://github.com/theislab/scgen-reproducibility,17,NA,NA,NA -theislab,scib,theislab/scib,259,16,37,56,FALSE,https://github.com/theislab/scib,NA,d42f919b5b0aac86f19937d4d4d02bf2e4d8bdbd,"Update dependencies (#396) +theislab,scib,theislab/scib,259,16,38,56,FALSE,https://github.com/theislab/scib,NA,d42f919b5b0aac86f19937d4d4d02bf2e4d8bdbd,"Update dependencies (#396) * pin pandas 2 and adapt breaking code @@ -268,7 +253,7 @@ theislab,scvelo,theislab/scvelo,382,13,55,100,FALSE,https://github.com/theislab/ Fix package directory.",[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317739547) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317739551) [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) theislab,scvelo_notebooks,theislab/scvelo_notebooks,26,2,2,12,FALSE,https://github.com/theislab/scvelo_notebooks,26,NA,NA,NA -theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/8351789062) +theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/8367556062) theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,5fcf932c44613e6bf4063ef3075ad6062bf5d9a1,round restored counts in some affected datasets,[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,ceb14c946f699c38d18a32192b76d4639caf845e,fix download links,[![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) theislab,sfaira-portal,theislab/sfaira-portal,0,4,2,0,FALSE,https://github.com/theislab/sfaira-portal,0,NA,NA,NA @@ -396,9 +381,9 @@ Signed-off-by: zethson Co-authored-by: xlancelottx Co-authored-by: zethson Co-authored-by: Anna Schaar ",[![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) -theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,64,3,0,9,FALSE,https://github.com/theislab/single-cell-transformer-papers,64,NA,NA,NA -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1272,30,21,437,FALSE,https://github.com/theislab/single-cell-tutorial,1272,NA,NA,NA -theislab,singlecell_proteomics,theislab/singlecell_proteomics,3,5,5,3,FALSE,https://github.com/theislab/singlecell_proteomics,3,NA,NA,NA +theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,66,3,0,9,FALSE,https://github.com/theislab/single-cell-transformer-papers,66,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1275,30,21,438,FALSE,https://github.com/theislab/single-cell-tutorial,1275,NA,NA,NA +theislab,singlecell_proteomics,theislab/singlecell_proteomics,3,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,3,NA,NA,NA theislab,spapros,theislab/spapros,21,3,15,5,FALSE,https://github.com/theislab/spapros,21,642fb34d2ccbb1bb8730b239840bf1bfe06701f8,"[DEPENDABOT]: Bump importlib-resources from 5.12.0 to 6.1.1 in /docs Bumps [importlib-resources](https://github.com/python/importlib_resources) from 5.12.0 to 6.1.1. @@ -437,4 +422,4 @@ theislab,transcription_factor_activity,theislab/transcription_factor_activity,1, theislab,trvaep,theislab/trvaep,9,3,0,4,FALSE,https://github.com/theislab/trvaep,9,NA,NA,NA theislab,unbalanced_monge_maps_single_cell,theislab/unbalanced_monge_maps_single_cell,1,0,0,0,FALSE,https://github.com/theislab/unbalanced_monge_maps_single_cell,1,NA,NA,NA theislab,zebrafish_bipolarity,theislab/zebrafish_bipolarity,1,4,0,1,FALSE,https://github.com/theislab/zebrafish_bipolarity,1,NA,NA,NA -theislab,zellkonverter,theislab/zellkonverter,123,5,22,24,FALSE,https://github.com/theislab/zellkonverter,123,9d557f853af45c84b64e26fd39a41c0a8c06992e,Update Roxygen to v7.3.0,[![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/7558891230) +theislab,zellkonverter,theislab/zellkonverter,123,5,23,24,FALSE,https://github.com/theislab/zellkonverter,123,9d557f853af45c84b64e26fd39a41c0a8c06992e,Update Roxygen to v7.3.0,[![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/7558891230)
theislab/cellrank 290 81314 36 @@ -127,14 +127,14 @@

GitHub Dashboard

theislab/scib 259 163738 56 d42f91
theislab/scgen242243 9 19 50 8 166 13 55bcbb
theislab/zellkonverter 123 52223 24 9d557f theislab/ncem 96 62425 13 216fd5 theislab/ncem 96 62425 13 theislab/moscot 88 34143 6 6ea9a1
theislab/moscot883416 -a5187c
theislab/pertpy7980 4 28 15 54b7f3
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