| theislab/single-cell-tutorial |
-1415 |
+1417 |
30 |
21 |
465 |
| theislab/scarches |
-339 |
+340 |
12 |
53 |
51 |
| theislab/single-cell-transformer-papers |
-276 |
+278 |
14 |
37 |
31 |
| theislab/scgen |
-271 |
+272 |
9 |
28 |
56 |
@@ -452,14 +458,14 @@ Repos without Github Actions
| theislab/anndata2ri |
-129 |
+130 |
7 |
14 |
16 |
| theislab/chemCPA |
-104 |
+103 |
5 |
12 |
24 |
@@ -480,7 +486,7 @@ Repos without Github Actions
| theislab/nicheformer |
-68 |
+69 |
5 |
14 |
2 |
@@ -549,26 +555,26 @@ Repos without Github Actions
0 |
+| theislab/DRVI |
+32 |
+1 |
+1 |
+3 |
+
+
| theislab/scvelo_notebooks |
32 |
2 |
4 |
13 |
-
+
| theislab/deepflow |
31 |
5 |
1 |
14 |
-
-| theislab/DRVI |
-31 |
-1 |
-1 |
-3 |
-
| theislab/DeepRT |
30 |
@@ -605,18 +611,18 @@ Repos without Github Actions
11 |
-| theislab/scgen-reproducibility |
+theislab/neural_organoid_atlas |
23 |
-4 |
6 |
-9 |
+3 |
+4 |
-| theislab/neural_organoid_atlas |
-22 |
-6 |
-3 |
+theislab/scgen-reproducibility |
+23 |
4 |
+6 |
+9 |
| theislab/interactive_plotting |
@@ -878,776 +884,783 @@ Repos without Github Actions
1 |
+| theislab/moscot_notebooks |
+7 |
+1 |
+9 |
+4 |
+
+
| theislab/mouse_cross-condition_pancreatic_islet_atlas |
7 |
2 |
0 |
4 |
-
+
| theislab/CFGen |
6 |
1 |
1 |
4 |
-
+
| theislab/disent |
6 |
3 |
0 |
0 |
-
+
| theislab/intercode |
6 |
3 |
1 |
1 |
-
+
| theislab/multimil_reproducibility |
6 |
3 |
4 |
1 |
-
+
| theislab/pancreatic-endocrinogenesis |
6 |
3 |
0 |
7 |
-
+
| theislab/sfaira_tutorials |
6 |
4 |
4 |
2 |
-
+
| theislab/theislab.github.io |
6 |
2 |
9 |
0 |
-
+
| theislab/trVAE_reproducibility |
6 |
3 |
2 |
7 |
-
+
| theislab/atlas-feature-selection-benchmark |
5 |
2 |
0 |
0 |
-
+
| theislab/ehrdata |
5 |
2 |
-19 |
+20 |
1 |
-
+
| theislab/flowVI |
5 |
3 |
0 |
0 |
-
+
| theislab/InterpretableAutoencoders |
5 |
4 |
0 |
0 |
-
+
| theislab/kbranches |
5 |
7 |
0 |
0 |
-
+
| theislab/scanpy-demo-czbiohub |
5 |
5 |
0 |
5 |
-
+
| theislab/singlecell_proteomics |
5 |
5 |
6 |
3 |
-
+
| theislab/ssl_in_scg |
5 |
1 |
0 |
1 |
-
+
| theislab/2022_Tritschler_pancreas_cross_species |
4 |
3 |
0 |
1 |
-
+
| theislab/archmap |
4 |
2 |
3 |
0 |
-
+
| theislab/covid-perturbation |
4 |
3 |
0 |
0 |
-
+
| theislab/feature-attribution-sc |
4 |
2 |
8 |
1 |
-
+
| theislab/LODE |
4 |
2 |
9 |
0 |
-
+
| theislab/perturbation-metrics |
4 |
2 |
1 |
0 |
-
+
| theislab/task-dge-perturbation-prediction-analysis |
4 |
2 |
0 |
1 |
-
+
| theislab/cellrank_reproducibility_preprint |
3 |
2 |
0 |
0 |
-
+
| theislab/extended-single-cell-best-practices-container |
3 |
4 |
2 |
1 |
-
+
| theislab/moscot-framework_reproducibility |
3 |
2 |
2 |
0 |
-
+
| theislab/moscot_not |
3 |
2 |
8 |
1 |
-
+
| theislab/multigrate_reproducibility |
3 |
1 |
0 |
0 |
-
+
| theislab/multires-consensus-clustering |
3 |
4 |
9 |
0 |
-
+
| theislab/nbconvertR |
3 |
3 |
1 |
2 |
-
+
| theislab/sc_analysis_template |
3 |
3 |
0 |
0 |
-
+
| theislab/spatial_atlas_ssl |
3 |
2 |
0 |
0 |
-
+
| theislab/svaeligr |
3 |
3 |
0 |
0 |
-
+
| theislab/txsim |
3 |
2 |
40 |
0 |
-
+
| theislab/2020_iPS_Lung_Differentiation |
2 |
5 |
0 |
2 |
-
+
| theislab/2021_Aliluev_Tritschler_gut_HFD |
2 |
4 |
0 |
1 |
-
+
| theislab/bartseq-pipeline |
2 |
4 |
0 |
3 |
-
+
| theislab/campa_ana |
2 |
4 |
0 |
0 |
-
+
| theislab/covid_macrophages_integration |
2 |
5 |
0 |
5 |
-
+
| theislab/DRVI_reproducibility |
2 |
3 |
0 |
1 |
-
+
| theislab/ehrapy-reproducibility |
2 |
1 |
1 |
0 |
-
+
| theislab/epicardiods_analysis |
2 |
2 |
1 |
0 |
-
+
| theislab/flexible_priors |
2 |
2 |
0 |
0 |
-
+
| theislab/gut_lineage |
2 |
3 |
0 |
3 |
-
+
| theislab/HPA_reproducibility |
2 |
3 |
0 |
1 |
-
+
| theislab/HRCA-reproducibility |
2 |
4 |
0 |
1 |
-
+
| theislab/interaction-tools |
2 |
4 |
0 |
0 |
-
+
| theislab/LineagePulse |
2 |
5 |
0 |
0 |
-
+
| theislab/LungInjuryRegeneration |
2 |
8 |
0 |
0 |
-
+
| theislab/masterpraktikum_ssl_segmentation |
2 |
3 |
0 |
2 |
-
+
| theislab/moscot_benchmarks |
2 |
2 |
1 |
0 |
-
+
| theislab/scanpy_squidpy_demo_2021 |
2 |
4 |
0 |
1 |
-
+
| theislab/scPoli_legacy |
2 |
5 |
0 |
0 |
-
+
| theislab/tissue |
2 |
3 |
0 |
0 |
-
+
| theislab/2021_PRMT7_regulates_Monocyte_Extravasation |
1 |
4 |
0 |
2 |
-
+
| theislab/archmap_data |
1 |
0 |
2 |
0 |
-
+
| theislab/astrocytes_reprogramming_analysis |
1 |
5 |
0 |
0 |
-
+
| theislab/augurpy |
1 |
2 |
10 |
0 |
-
+
| theislab/autoencoderPS |
1 |
3 |
0 |
2 |
-
+
| theislab/bartSeq |
1 |
5 |
1 |
5 |
-
+
| theislab/bindome |
1 |
3 |
5 |
1 |
-
+
| theislab/countae |
1 |
4 |
0 |
0 |
-
+
| theislab/ehrapy-cli |
1 |
3 |
0 |
0 |
-
+
| theislab/ehrapy-site |
1 |
2 |
0 |
0 |
-
+
| theislab/ifcseq |
1 |
3 |
0 |
1 |
-
+
| theislab/MS_mv_modelling |
1 |
2 |
0 |
1 |
-
+
| theislab/pertpy-reproducibility |
1 |
2 |
0 |
1 |
-
+
| theislab/sc_mae |
1 |
2 |
0 |
0 |
-
+
| theislab/spapros_reproducibility |
1 |
1 |
0 |
1 |
-
+
| theislab/tardis |
1 |
1 |
0 |
2 |
-
+
| theislab/tissue_reproducibility |
1 |
3 |
0 |
0 |
-
+
| theislab/transcription_factor_activity |
1 |
1 |
5 |
1 |
-
+
| theislab/unbalanced_monge_maps_single_cell |
1 |
1 |
0 |
0 |
-
+
| theislab/zebrafish_bipolarity |
1 |
4 |
0 |
1 |
-
+
| theislab/2015-grn-inference |
0 |
2 |
0 |
0 |
-
+
| theislab/2020_Inhibition_LTbetaR-signalling |
0 |
4 |
0 |
3 |
-
+
| theislab/2022_Bakhti_pancreas_Syt13 |
0 |
3 |
0 |
0 |
-
+
| theislab/archmap_admin |
0 |
2 |
0 |
0 |
-
+
| theislab/archmap_doc |
0 |
3 |
0 |
0 |
-
+
| theislab/collideseq_reproducibility |
0 |
2 |
0 |
0 |
-
+
| theislab/consensus-clustering-evaluation |
0 |
4 |
0 |
0 |
-
+
| theislab/dali |
0 |
7 |
0 |
1 |
-
+
| theislab/edgepy |
0 |
3 |
0 |
0 |
-
+
| theislab/ELS_analysis |
0 |
2 |
0 |
0 |
-
+
| theislab/GoBI_single_cell |
0 |
3 |
0 |
0 |
-
+
| theislab/hadge-reproducibility |
0 |
2 |
0 |
0 |
-
+
| theislab/icml_cbw_2022_clcvae |
0 |
3 |
0 |
0 |
-
+
| theislab/integraph |
0 |
2 |
4 |
0 |
-
+
| theislab/ipsc_ipd_analysis |
0 |
3 |
0 |
0 |
-
+
| theislab/LungAgingAtlas |
0 |
5 |
0 |
0 |
-
+
| theislab/MetaMap-web |
0 |
4 |
2 |
0 |
-
+
| theislab/mubind-benchmark |
0 |
2 |
19 |
0 |
-
+
| theislab/multicpa-reproducibility |
0 |
2 |
0 |
0 |
-
+
| theislab/organoid_dexamethason_stimulation |
0 |
3 |
0 |
1 |
-
+
| theislab/pancreas-targeted_pharmacology |
0 |
6 |
1 |
2 |
-
+
| theislab/pdac_analysis |
0 |
2 |
0 |
0 |
-
+
| theislab/prophet-reproducibility |
0 |
3 |
0 |
0 |
-
+
| theislab/reproducability_AutoGeneS |
0 |
3 |
0 |
0 |
-
+
| theislab/reproducibility_AutoGeneS |
0 |
3 |
0 |
0 |
-
+
| theislab/scanpy.org |
0 |
7 |
1 |
0 |
-
+
| theislab/scanpy_neighbors |
0 |
3 |
0 |
1 |
-
+
| theislab/scarches_notebooks |
0 |
3 |
0 |
0 |
-
+
| theislab/scProtVelo |
0 |
1 |
0 |
0 |
-
+
| theislab/sc_ketamine_analysis |
0 |
4 |
0 |
0 |
-
+
| theislab/sfaira-portal |
0 |
4 |
2 |
0 |
-
+
| theislab/sfaira-site |
0 |
4 |
0 |
0 |
-
+
| theislab/sfaira_benchmarks |
0 |
3 |
0 |
0 |
-
+
| theislab/sfaira_extension |
0 |
3 |
1 |
0 |
-
+
| theislab/spapros-smk |
0 |
2 |
0 |
1 |
-
+
| theislab/spatialdata-db-submission |
0 |
2 |
diff --git a/repos.csv b/repos.csv
index 46816bc..e4c3ffb 100644
--- a/repos.csv
+++ b/repos.csv
@@ -12,7 +12,7 @@ theislab,2022_Tritschler_pancreas_cross_species,theislab/2022_Tritschler_pancrea
theislab,AutoGeneS,theislab/AutoGeneS,57,6,6,8,FALSE,https://github.com/theislab/AutoGeneS,57,NA,NA,NA
theislab,CFGen,theislab/CFGen,6,1,1,4,FALSE,https://github.com/theislab/CFGen,6,NA,NA,NA
theislab,Covid_meta_analysis,theislab/Covid_meta_analysis,24,8,2,11,FALSE,https://github.com/theislab/Covid_meta_analysis,24,NA,NA,NA
-theislab,DRVI,theislab/DRVI,31,1,1,3,FALSE,https://github.com/theislab/DRVI,31,NA,NA,NA
+theislab,DRVI,theislab/DRVI,32,1,1,3,FALSE,https://github.com/theislab/DRVI,32,NA,NA,NA
theislab,DRVI_reproducibility,theislab/DRVI_reproducibility,2,3,0,1,FALSE,https://github.com/theislab/DRVI_reproducibility,2,NA,NA,NA
theislab,DeepCollisionalCrossSection,theislab/DeepCollisionalCrossSection,14,5,1,6,FALSE,https://github.com/theislab/DeepCollisionalCrossSection,14,NA,NA,NA
theislab,DeepRT,theislab/DeepRT,30,2,11,10,FALSE,https://github.com/theislab/DeepRT,30,NA,NA,NA
@@ -31,7 +31,7 @@ theislab,MS_mv_modelling,theislab/MS_mv_modelling,1,2,0,1,FALSE,https://github.c
theislab,MetaMap,theislab/MetaMap,12,7,0,8,FALSE,https://github.com/theislab/MetaMap,12,NA,NA,NA
theislab,MetaMap-web,theislab/MetaMap-web,0,4,2,0,FALSE,https://github.com/theislab/MetaMap-web,0,NA,NA,NA
theislab,PathReg,theislab/PathReg,8,3,0,0,FALSE,https://github.com/theislab/PathReg,8,NA,NA,NA
-theislab,anndata2ri,theislab/anndata2ri,129,7,14,16,FALSE,https://github.com/theislab/anndata2ri,129,NA,NA,NA
+theislab,anndata2ri,theislab/anndata2ri,130,7,14,16,FALSE,https://github.com/theislab/anndata2ri,130,NA,NA,NA
theislab,archmap,theislab/archmap,4,2,3,0,FALSE,https://github.com/theislab/archmap,4,NA,NA,NA
theislab,archmap_admin,theislab/archmap_admin,0,2,0,0,FALSE,https://github.com/theislab/archmap_admin,0,NA,NA,NA
theislab,archmap_data,theislab/archmap_data,1,0,2,0,FALSE,https://github.com/theislab/archmap_data,1,NA,NA,NA
@@ -120,13 +120,13 @@ theislab,cellrank,theislab/cellrank,354,8,22,47,FALSE,https://github.com/theisla
---------
Co-authored-by: Heinz-Alexander Fuetterer ",[](https://github.com/theislab/cellrank/actions/runs/10872921434)
-theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,8,1,1,2,FALSE,https://github.com/theislab/cellrank2_reproducibility,8,8020e797c0afcde5ba9b8c2f0182b1c25d56f11f,"Update paper references (#64)
+theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,9,1,1,2,FALSE,https://github.com/theislab/cellrank2_reproducibility,9,8020e797c0afcde5ba9b8c2f0182b1c25d56f11f,"Update paper references (#64)
Update references to published paper.",[](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963288) [](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963242)
theislab,cellrank_notebooks,theislab/cellrank_notebooks,6,4,1,5,FALSE,https://github.com/theislab/cellrank_notebooks,6,6777840bcc146924d208c0b9b02677da63620805,[ci skip] Fix pepy badge,[](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756)
theislab,cellrank_reproducibility,theislab/cellrank_reproducibility,14,2,1,8,FALSE,https://github.com/theislab/cellrank_reproducibility,14,NA,NA,NA
theislab,cellrank_reproducibility_preprint,theislab/cellrank_reproducibility_preprint,3,2,0,0,FALSE,https://github.com/theislab/cellrank_reproducibility_preprint,3,NA,NA,NA
-theislab,chemCPA,theislab/chemCPA,104,5,12,24,FALSE,https://github.com/theislab/chemCPA,104,NA,NA,NA
+theislab,chemCPA,theislab/chemCPA,103,5,12,24,FALSE,https://github.com/theislab/chemCPA,103,NA,NA,NA
theislab,collideseq_reproducibility,theislab/collideseq_reproducibility,0,2,0,0,FALSE,https://github.com/theislab/collideseq_reproducibility,0,NA,NA,NA
theislab,consensus-clustering-evaluation,theislab/consensus-clustering-evaluation,0,4,0,0,FALSE,https://github.com/theislab/consensus-clustering-evaluation,0,NA,NA,NA
theislab,countae,theislab/countae,1,4,0,0,FALSE,https://github.com/theislab/countae,1,NA,NA,NA
@@ -143,13 +143,14 @@ theislab,diffxpy,theislab/diffxpy,193,7,108,23,FALSE,https://github.com/theislab
theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA
theislab,disent,theislab/disent,6,3,0,0,FALSE,https://github.com/theislab/disent,6,NA,NA,NA
theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA
-theislab,ehrapy,theislab/ehrapy,240,5,42,20,FALSE,https://github.com/theislab/ehrapy,240,419f2b2f8d9f21d4528ae7c84ce77a48ec48ee31,"[pre-commit.ci] pre-commit autoupdate (#839)
+theislab,ehrapy,theislab/ehrapy,241,5,42,20,FALSE,https://github.com/theislab/ehrapy,241,419f2b2f8d9f21d4528ae7c84ce77a48ec48ee31,"[pre-commit.ci] pre-commit autoupdate (#839)
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.8.1 → v0.8.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.8.1...v0.8.2)
-Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[](https://github.com/theislab/ehrapy/actions/runs/12244570924) [](https://github.com/theislab/ehrapy/actions/runs/12244570928) [](https://github.com/theislab/ehrapy/actions/runs/12244571064) [](https://github.com/theislab/ehrapy/actions/runs/12244570916) [](https://github.com/theislab/ehrapy/actions/runs/12244570927)
-theislab,ehrapy,theislab/ehrapy,240,5,42,20,FALSE,https://github.com/theislab/ehrapy,240,c4721fb128532782c9af134029a70a5e42293f18,"0.10.0 release
+Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[](https://github.com/theislab/ehrapy/actions/runs/12244570924)
+theislab,ehrapy,theislab/ehrapy,241,5,42,20,FALSE,https://github.com/theislab/ehrapy,241,90dcabd7a1f28da2d1c9ab9d3a57928f43dddc58,using current commit of tutorials notebook,[](https://github.com/theislab/ehrapy/actions/runs/12273612322)
+theislab,ehrapy,theislab/ehrapy,241,5,42,20,FALSE,https://github.com/theislab/ehrapy,241,c4721fb128532782c9af134029a70a5e42293f18,"0.10.0 release
Signed-off-by: zethson ",[](https://github.com/theislab/ehrapy/actions/runs/12115165279)
theislab,ehrapy-cli,theislab/ehrapy-cli,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-cli,1,NA,NA,NA
@@ -159,7 +160,7 @@ change diabetes dataset doc",[![](https://github.com/theislab/ehrapy-datasets/wo
theislab,ehrapy-reproducibility,theislab/ehrapy-reproducibility,2,1,1,0,FALSE,https://github.com/theislab/ehrapy-reproducibility,2,NA,NA,NA
theislab,ehrapy-site,theislab/ehrapy-site,1,2,0,0,FALSE,https://github.com/theislab/ehrapy-site,1,NA,NA,NA
theislab,ehrapy-tutorials,theislab/ehrapy-tutorials,7,3,0,1,FALSE,https://github.com/theislab/ehrapy-tutorials,7,NA,NA,NA
-theislab,ehrdata,theislab/ehrdata,5,2,19,1,FALSE,https://github.com/theislab/ehrdata,5,NA,NA,NA
+theislab,ehrdata,theislab/ehrdata,5,2,20,1,FALSE,https://github.com/theislab/ehrdata,5,NA,NA,NA
theislab,enrichment_analysis_celltype,theislab/enrichment_analysis_celltype,9,5,0,4,FALSE,https://github.com/theislab/enrichment_analysis_celltype,9,NA,NA,NA
theislab,epicardiods_analysis,theislab/epicardiods_analysis,2,2,1,0,FALSE,https://github.com/theislab/epicardiods_analysis,2,NA,NA,NA
theislab,expiMap_reproducibility,theislab/expiMap_reproducibility,9,5,3,4,FALSE,https://github.com/theislab/expiMap_reproducibility,9,NA,NA,NA
@@ -171,7 +172,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,10,4,0,1,FALSE,htt
theislab,geome,theislab/geome,16,3,3,4,FALSE,https://github.com/theislab/geome,16,402a0a8cdb442fee8666416e5f163c4098fa0c07,"Merge pull request #55 from theislab/fix/toarray
Fix Sparse "".A"" Not Found",[](https://github.com/theislab/geome/actions/runs/10868284169)
-theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,37b2ad2393fb383cae760935a7205b41ff80128d,[status] 2024-12-09 12:12:59 UTC,[](https://github.com/theislab/gh-dashboard/actions/runs/12255678336)
+theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,31e0b9e95faefb7377f6609ef4d28645ffd56d89,[status] 2024-12-10 12:13:13 UTC,[](https://github.com/theislab/gh-dashboard/actions/runs/12275939343)
theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA
theislab,graphcompass,theislab/graphcompass,34,2,1,0,FALSE,https://github.com/theislab/graphcompass,34,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[](https://github.com/theislab/graphcompass/actions/runs/7630989244) [](https://github.com/theislab/graphcompass/actions/runs/7630989237)
theislab,greatpy,theislab/greatpy,9,3,4,0,FALSE,https://github.com/theislab/greatpy,9,NA,NA,NA
@@ -197,9 +198,7 @@ Fixing Linting and Plotting Error",[![](https://github.com/theislab/moscot/workf
theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,3,2,2,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,3,NA,NA,NA
theislab,moscot_benchmarks,theislab/moscot_benchmarks,2,2,1,0,FALSE,https://github.com/theislab/moscot_benchmarks,2,NA,NA,NA
theislab,moscot_not,theislab/moscot_not,3,2,8,1,FALSE,https://github.com/theislab/moscot_not,3,NA,NA,NA
-theislab,moscot_notebooks,theislab/moscot_notebooks,7,1,8,3,FALSE,https://github.com/theislab/moscot_notebooks,7,2107658c3ede74ec7c818051bba518143d05db82,"Merge pull request #81 from theislab/add/geodesic_costs
-
-example on cost geodesic on current example for custom costs",[](https://github.com/theislab/moscot_notebooks/actions/runs/12226666847)
+theislab,moscot_notebooks,theislab/moscot_notebooks,7,1,9,4,FALSE,https://github.com/theislab/moscot_notebooks,7,NA,NA,NA
theislab,moslin,theislab/moslin,11,1,0,1,FALSE,https://github.com/theislab/moslin,11,NA,NA,NA
theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,7,2,0,4,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,7,NA,NA,NA
theislab,mubind,theislab/mubind,28,3,29,0,FALSE,https://github.com/theislab/mubind,28,3f62f838470ebc499540ff54fb8d074363abd7b6,Dropbox URL (typo),[](https://github.com/theislab/mubind/actions/runs/10632591185)
@@ -217,8 +216,8 @@ theislab,nbconvertR,theislab/nbconvertR,3,3,1,2,FALSE,https://github.com/theisla
theislab,ncem,theislab/ncem,104,6,28,13,FALSE,https://github.com/theislab/ncem,104,d03a0792b9ab6ea62d2715b57ce50fcf1a84967c,remove patsy dependency,[](https://github.com/theislab/ncem/actions/runs/6666317399) [](https://github.com/theislab/ncem/actions/runs/6666317397)
theislab,ncem_benchmarks,theislab/ncem_benchmarks,8,4,4,2,FALSE,https://github.com/theislab/ncem_benchmarks,8,NA,NA,NA
theislab,ncem_tutorials,theislab/ncem_tutorials,12,4,6,0,FALSE,https://github.com/theislab/ncem_tutorials,12,NA,NA,NA
-theislab,neural_organoid_atlas,theislab/neural_organoid_atlas,22,6,3,4,FALSE,https://github.com/theislab/neural_organoid_atlas,22,NA,NA,NA
-theislab,nicheformer,theislab/nicheformer,68,5,14,2,FALSE,https://github.com/theislab/nicheformer,68,NA,NA,NA
+theislab,neural_organoid_atlas,theislab/neural_organoid_atlas,23,6,3,4,FALSE,https://github.com/theislab/neural_organoid_atlas,23,NA,NA,NA
+theislab,nicheformer,theislab/nicheformer,69,5,14,2,FALSE,https://github.com/theislab/nicheformer,69,NA,NA,NA
theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimulation,0,3,0,1,FALSE,https://github.com/theislab/organoid_dexamethason_stimulation,0,NA,NA,NA
theislab,paga,theislab/paga,211,10,24,33,FALSE,https://github.com/theislab/paga,211,NA,NA,NA
theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,6,1,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA
@@ -254,10 +253,10 @@ theislab,scanpydoc,theislab/scanpydoc,12,6,3,6,FALSE,https://github.com/theislab
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Philipp A. ",[](https://github.com/theislab/scanpydoc/actions/runs/12252673511)
-theislab,scarches,theislab/scarches,339,12,53,51,FALSE,https://github.com/theislab/scarches,339,NA,NA,NA
+theislab,scarches,theislab/scarches,340,12,53,51,FALSE,https://github.com/theislab/scarches,340,NA,NA,NA
theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA
theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,9,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,9,NA,NA,NA
-theislab,scgen,theislab/scgen,271,9,28,56,FALSE,https://github.com/theislab/scgen,271,NA,NA,NA
+theislab,scgen,theislab/scgen,272,9,28,56,FALSE,https://github.com/theislab/scgen,272,NA,NA,NA
theislab,scgen-reproducibility,theislab/scgen-reproducibility,23,4,6,9,FALSE,https://github.com/theislab/scgen-reproducibility,23,NA,NA,NA
theislab,scib,theislab/scib,315,14,41,63,FALSE,https://github.com/theislab/scib,NA,d35727305501f905424f19a0e95b61dcda61c460,"Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows (#415)
@@ -322,7 +321,7 @@ theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theis
theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA
theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA
theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,4,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA
-theislab,single-cell-best-practices,theislab/single-cell-best-practices,793,19,73,190,FALSE,https://github.com/theislab/single-cell-best-practices,793,343c7e0a9fa9dbe98283faba070cf1426dab71f3,"Fixed some typos (#303)
+theislab,single-cell-best-practices,theislab/single-cell-best-practices,794,19,73,190,FALSE,https://github.com/theislab/single-cell-best-practices,794,343c7e0a9fa9dbe98283faba070cf1426dab71f3,"Fixed some typos (#303)
* fix additional ""does""
@@ -349,12 +348,12 @@ theislab,single-cell-best-practices,theislab/single-cell-best-practices,793,19,7
* fix typo
* fix typo",[](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802)
-theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,276,14,37,31,FALSE,https://github.com/theislab/single-cell-transformer-papers,276,NA,NA,NA
-theislab,single-cell-tutorial,theislab/single-cell-tutorial,1415,30,21,465,FALSE,https://github.com/theislab/single-cell-tutorial,1415,NA,NA,NA
+theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,278,14,37,31,FALSE,https://github.com/theislab/single-cell-transformer-papers,278,NA,NA,NA
+theislab,single-cell-tutorial,theislab/single-cell-tutorial,1417,30,21,465,FALSE,https://github.com/theislab/single-cell-tutorial,1417,NA,NA,NA
theislab,singlecell_proteomics,theislab/singlecell_proteomics,5,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,5,NA,NA,NA
theislab,spapros,theislab/spapros,32,3,11,7,FALSE,https://github.com/theislab/spapros,32,1ec08e6809978021e7ad0d7b7ce4f5412f391f79,"Merge pull request #357 from theislab/scrinshot_probe_designer
-adapter tutorials to new framework",[](https://github.com/theislab/spapros/actions/runs/11988703697) [](https://github.com/theislab/spapros/actions/runs/12247637056)
+adapter tutorials to new framework",[](https://github.com/theislab/spapros/actions/runs/11988703697) [](https://github.com/theislab/spapros/actions/runs/12267931239)
theislab,spapros,theislab/spapros,32,3,11,7,FALSE,https://github.com/theislab/spapros,32,2f6c1ad9fdab44d29017e268ef215d18278f56b9,prints for identifying mem issues,[](https://github.com/theislab/spapros/actions/runs/12087589767) [](https://github.com/theislab/spapros/actions/runs/12087589776) [](https://github.com/theislab/spapros/actions/runs/12087589778) [](https://github.com/theislab/spapros/actions/runs/12087589764)
theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,fe84cf66cf6cf9b8fb441c74d4c004c20d1003cf,Update readme to refer to spapros smk repo,[](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512)
theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA
@@ -379,6 +378,7 @@ theislab,tissue_tensorflow,theislab/tissue_tensorflow,8,3,0,0,FALSE,https://gith
theislab,trVAE,theislab/trVAE,55,6,3,12,FALSE,https://github.com/theislab/trVAE,55,NA,NA,NA
theislab,trVAE_reproducibility,theislab/trVAE_reproducibility,6,3,2,7,FALSE,https://github.com/theislab/trVAE_reproducibility,6,NA,NA,NA
theislab,transcription_factor_activity,theislab/transcription_factor_activity,1,1,5,1,FALSE,https://github.com/theislab/transcription_factor_activity,1,NA,NA,NA
+theislab,troutpy,theislab/troutpy,0,2,0,0,FALSE,https://github.com/theislab/troutpy,0,cd75055c2ab91ef18a8ba90064cc4f1caf403ad8,first commit,[](https://github.com/theislab/troutpy/actions/runs/12230881448) [](https://github.com/theislab/troutpy/actions/runs/12230881443)
theislab,trvaep,theislab/trvaep,9,3,0,6,FALSE,https://github.com/theislab/trvaep,9,NA,NA,NA
theislab,txsim,theislab/txsim,3,2,40,0,FALSE,https://github.com/theislab/txsim,3,NA,NA,NA
theislab,unbalanced_monge_maps_single_cell,theislab/unbalanced_monge_maps_single_cell,1,1,0,0,FALSE,https://github.com/theislab/unbalanced_monge_maps_single_cell,1,NA,NA,NA
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-
-
-
