From a587ade92acd847e9d42365213b327ea232f6b50 Mon Sep 17 00:00:00 2001 From: GitHub Actions Date: Fri, 17 May 2024 12:12:41 +0000 Subject: [PATCH] [status] 2024-05-17 12:12:41 UTC --- README.md | 29 +++--- index.html | 276 +++++++++++++++++++++++++++-------------------------- repos.csv | 31 +++--- 3 files changed, 173 insertions(+), 163 deletions(-) diff --git a/README.md b/README.md index 5a5870a..02e7ebd 100644 --- a/README.md +++ b/README.md @@ -2,19 +2,19 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-05-16 12:10:33 UTC +2024-05-17 12:10:18 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 652 | 18 | 56 | 143 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064601) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064600) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064597) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064598) | b7335c | -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 652 | 18 | 56 | 143 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 656 | 19 | 57 | 144 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064601) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064600) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064597) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064598) | b7335c | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 656 | 19 | 57 | 144 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | | [theislab/scvelo](https://github.com/theislab/scvelo) | 393 | 12 | 57 | 101 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | | [theislab/scvelo](https://github.com/theislab/scvelo) | 393 | 12 | 57 | 101 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8665253017) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8665253018) | f21651 | | [theislab/cellrank](https://github.com/theislab/cellrank) | 305 | 8 | 17 | 38 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8601715542) | 08f1c9 | | [theislab/cellrank](https://github.com/theislab/cellrank) | 305 | 8 | 17 | 38 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/9055262988) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/9055323922) | 607491 | | [theislab/scib](https://github.com/theislab/scib) | 276 | 14 | 36 | 59 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/8788684911) | 9c5a93 | | [theislab/scgen](https://github.com/theislab/scgen) | 247 | 9 | 19 | 51 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 133 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9104305264) | 55bcbb | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 133 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9120814532) | 55bcbb | | [theislab/sfaira](https://github.com/theislab/sfaira) | 133 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 133 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | | [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 132 | 5 | 23 | 26 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/8968608190) | 7b1186 | @@ -25,24 +25,24 @@ GitHub Dashboard | [theislab/ncem](https://github.com/theislab/ncem) | 98 | 6 | 26 | 13 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | | [theislab/ncem](https://github.com/theislab/ncem) | 98 | 6 | 26 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | | [theislab/moscot](https://github.com/theislab/moscot) | 94 | 3 | 41 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/8263290173) | 6ea9a1 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 83 | 4 | 23 | 16 | [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/9110030715) [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/9110030723) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/9110030703) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/9110030708) | 246ff5 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 83 | 4 | 23 | 16 | [![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446183) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446170) [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446165) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446171) | 54b7f3 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 83 | 4 | 23 | 16 | [![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8679592172) | be4cce | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 83 | 4 | 24 | 16 | [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/9110030715) [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/9110030723) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/9110030703) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/9110030708) | 246ff5 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 83 | 4 | 24 | 16 | [![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446183) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446170) [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446165) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446171) | 54b7f3 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 83 | 4 | 24 | 16 | [![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8679592172) | be4cce | | [theislab/destiny](https://github.com/theislab/destiny) | 67 | 5 | 31 | 12 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) | 300eb2 | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 47 | 9 | [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | | [theislab/hadge](https://github.com/theislab/hadge) | 23 | 3 | 16 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | -| [theislab/spapros](https://github.com/theislab/spapros) | 21 | 3 | 9 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/9105034484) | e8a37c | +| [theislab/spapros](https://github.com/theislab/spapros) | 21 | 3 | 9 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/9121534217) | e8a37c | | [theislab/spapros](https://github.com/theislab/spapros) | 21 | 3 | 9 | 5 | [![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/9068325347) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/9068325350) [![](https://github.com/theislab/spapros/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/spapros/actions/runs/9068325357) [![](https://github.com/theislab/spapros/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/spapros/actions/runs/9068325338) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/9068325337) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/9068325344) | fe76ca | | [theislab/mubind](https://github.com/theislab/mubind) | 20 | 3 | 30 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/9103890358) | b6188a | | [theislab/geome](https://github.com/theislab/geome) | 15 | 3 | 2 | 4 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | +| [theislab/geome](https://github.com/theislab/geome) | 15 | 3 | 2 | 4 | [![](https://github.com/theislab/geome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/geome/actions/runs/9119133349) [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/9119133353) | f2a58e | | [theislab/graphcompass](https://github.com/theislab/graphcompass) | 15 | 2 | 0 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/9076122683) | 940a9d | | [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | -| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 4 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/9055295814) | bc71ed | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 5 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 4 | 1 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/8315825726) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/8315825728) | f5c767 | | [theislab/ehrdata](https://github.com/theislab/ehrdata) | 4 | 3 | 1 | 1 | [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/9090266970) | ec6303 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/9111866974) | 6e1bb7 | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/9127852123) | 2f6a00 | | [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | @@ -52,7 +52,7 @@ GitHub Dashboard | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1301 | 30 | 21 | 438 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1302 | 30 | 21 | 438 | | [theislab/scarches](https://github.com/theislab/scarches) | 310 | 14 | 39 | 49 | | [theislab/dca](https://github.com/theislab/dca) | 238 | 11 | 31 | 70 | | [theislab/paga](https://github.com/theislab/paga) | 187 | 10 | 22 | 32 | @@ -60,9 +60,9 @@ GitHub Dashboard | [theislab/kBET](https://github.com/theislab/kBET) | 147 | 8 | 8 | 23 | | [theislab/scCODA](https://github.com/theislab/scCODA) | 136 | 9 | 5 | 23 | | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 130 | 6 | 6 | 10 | -| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 105 | 6 | 0 | 10 | +| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 106 | 6 | 0 | 10 | | [theislab/chemCPA](https://github.com/theislab/chemCPA) | 88 | 5 | 9 | 22 | -| [theislab/cpa](https://github.com/theislab/cpa) | 75 | 4 | 14 | 15 | +| [theislab/cpa](https://github.com/theislab/cpa) | 76 | 4 | 14 | 15 | | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 60 | 7 | 16 | 28 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 53 | 6 | 5 | 8 | | [theislab/trVAE](https://github.com/theislab/trVAE) | 53 | 7 | 2 | 11 | @@ -76,8 +76,8 @@ GitHub Dashboard | [theislab/DeepRT](https://github.com/theislab/DeepRT) | 27 | 2 | 11 | 10 | | [theislab/graph_abstraction](https://github.com/theislab/graph_abstraction) | 26 | 8 | 0 | 10 | | [theislab/scvelo_notebooks](https://github.com/theislab/scvelo_notebooks) | 26 | 2 | 2 | 13 | +| [theislab/nicheformer](https://github.com/theislab/nicheformer) | 25 | 2 | 6 | 2 | | [theislab/Covid_meta_analysis](https://github.com/theislab/Covid_meta_analysis) | 24 | 8 | 2 | 11 | -| [theislab/nicheformer](https://github.com/theislab/nicheformer) | 24 | 2 | 6 | 2 | | [theislab/interactive_plotting](https://github.com/theislab/interactive_plotting) | 21 | 4 | 11 | 7 | | [theislab/scgen-reproducibility](https://github.com/theislab/scgen-reproducibility) | 17 | 4 | 5 | 8 | | [theislab/cellrank_reproducibility](https://github.com/theislab/cellrank_reproducibility) | 14 | 2 | 0 | 8 | @@ -118,6 +118,7 @@ GitHub Dashboard | [theislab/2020_Mayr](https://github.com/theislab/2020_Mayr) | 6 | 6 | 0 | 8 | | [theislab/disent](https://github.com/theislab/disent) | 6 | 3 | 0 | 0 | | [theislab/intercode](https://github.com/theislab/intercode) | 6 | 3 | 1 | 1 | +| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 5 | 2 | | [theislab/scatac_poisson_reproducibility](https://github.com/theislab/scatac_poisson_reproducibility) | 6 | 3 | 0 | 0 | | [theislab/sfaira_tutorials](https://github.com/theislab/sfaira_tutorials) | 6 | 4 | 3 | 2 | | [theislab/trVAE_reproducibility](https://github.com/theislab/trVAE_reproducibility) | 6 | 3 | 2 | 5 | diff --git a/index.html b/index.html index 3753422..b77fd9e 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

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Repos without Github Actions

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Repos without Github Actions

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Repos without Github Actions

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Repos without Github Actions

- - - + + + + - - + + - - + @@ -953,685 +954,692 @@

Repos without Github Actions

+ + + + + + + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + diff --git a/repos.csv b/repos.csv index 0f13878..a46e644 100644 --- a/repos.csv +++ b/repos.csv @@ -74,7 +74,7 @@ theislab,consensus-clustering-evaluation,theislab/consensus-clustering-evaluatio theislab,countae,theislab/countae,1,4,0,0,FALSE,https://github.com/theislab/countae,1,NA,NA,NA theislab,covid-perturbation,theislab/covid-perturbation,4,3,0,0,FALSE,https://github.com/theislab/covid-perturbation,4,NA,NA,NA theislab,covid_macrophages_integration,theislab/covid_macrophages_integration,2,5,0,4,FALSE,https://github.com/theislab/covid_macrophages_integration,2,NA,NA,NA -theislab,cpa,theislab/cpa,75,4,14,15,FALSE,https://github.com/theislab/cpa,75,NA,NA,NA +theislab,cpa,theislab/cpa,76,4,14,15,FALSE,https://github.com/theislab/cpa,76,NA,NA,NA theislab,cpa-reproducibility,theislab/cpa-reproducibility,7,2,1,1,FALSE,https://github.com/theislab/cpa-reproducibility,7,NA,NA,NA theislab,cross_system_integration,theislab/cross_system_integration,9,2,10,1,FALSE,https://github.com/theislab/cross_system_integration,9,NA,NA,NA theislab,dali,theislab/dali,0,7,0,1,FALSE,https://github.com/theislab/dali,0,NA,NA,NA @@ -113,7 +113,10 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,9,4,0,1,FALSE,http theislab,geome,theislab/geome,15,3,2,4,FALSE,https://github.com/theislab/geome,15,5bf0cd07b2ea7fa224a37f69232542a9e686c5bf,"Merge pull request #31 from theislab/template-update Automated template update from cookiecutter-scverse",[![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) -theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,6e1bb75308901b25330bfb3e569c8acbcd4d3935,[status] 2024-05-15 12:15:41 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/9111866974) +theislab,geome,theislab/geome,15,3,2,4,FALSE,https://github.com/theislab/geome,15,f2a58ed96b56ed4f62a6e8d39733944ee21a1dc2,"Merge pull request #48 from theislab/feature/_to_category_iterator + +Add transform operation: subset data",[![](https://github.com/theislab/geome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/geome/actions/runs/9119133349) [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/9119133353) +theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,2f6a003bfbc34603e584a5952b79709363d1bed1,[status] 2024-05-16 12:12:21 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/9127852123) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,graphcompass,theislab/graphcompass,15,2,0,0,FALSE,https://github.com/theislab/graphcompass,15,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,8,3,4,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA @@ -145,9 +148,7 @@ Co-authored-by: Dominik Klein ",[![](https://g theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,1,2,1,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,1,NA,NA,NA theislab,moscot_benchmarks,theislab/moscot_benchmarks,2,2,1,0,FALSE,https://github.com/theislab/moscot_benchmarks,2,NA,NA,NA theislab,moscot_not,theislab/moscot_not,3,2,8,1,FALSE,https://github.com/theislab/moscot_not,3,NA,NA,NA -theislab,moscot_notebooks,theislab/moscot_notebooks,6,1,4,2,FALSE,https://github.com/theislab/moscot_notebooks,6,bc71edf71be1ef2fd8a52d44414ece68f98e12b4,"Merge pull request #69 from theislab/revert-68-add/callback_ex - -Revert ""Passing callbacks example""",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/9055295814) +theislab,moscot_notebooks,theislab/moscot_notebooks,6,1,5,2,FALSE,https://github.com/theislab/moscot_notebooks,6,NA,NA,NA theislab,moslin,theislab/moslin,9,1,0,1,FALSE,https://github.com/theislab/moslin,9,NA,NA,NA theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,7,2,0,3,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,7,NA,NA,NA theislab,mubind,theislab/mubind,20,3,30,0,FALSE,https://github.com/theislab/mubind,20,b6188acacbb43c8414b74d022aebf051bceae991,test import changes,[![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/9103890358) @@ -164,13 +165,13 @@ theislab,ncem,theislab/ncem,98,6,26,13,FALSE,https://github.com/theislab/ncem,98 theislab,ncem_benchmarks,theislab/ncem_benchmarks,8,4,4,2,FALSE,https://github.com/theislab/ncem_benchmarks,8,NA,NA,NA theislab,ncem_tutorials,theislab/ncem_tutorials,10,4,5,0,FALSE,https://github.com/theislab/ncem_tutorials,10,NA,NA,NA theislab,neural_organoid_atlas,theislab/neural_organoid_atlas,9,4,2,1,FALSE,https://github.com/theislab/neural_organoid_atlas,9,NA,NA,NA -theislab,nicheformer,theislab/nicheformer,24,2,6,2,FALSE,https://github.com/theislab/nicheformer,24,NA,NA,NA +theislab,nicheformer,theislab/nicheformer,25,2,6,2,FALSE,https://github.com/theislab/nicheformer,25,NA,NA,NA theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimulation,0,3,0,1,FALSE,https://github.com/theislab/organoid_dexamethason_stimulation,0,NA,NA,NA theislab,paga,theislab/paga,187,10,22,32,FALSE,https://github.com/theislab/paga,187,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,7,0,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,4,3,0,6,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,4,NA,NA,NA theislab,pdac_analysis,theislab/pdac_analysis,0,2,0,0,FALSE,https://github.com/theislab/pdac_analysis,0,NA,NA,NA -theislab,pertpy,theislab/pertpy,83,4,23,16,FALSE,https://github.com/theislab/pertpy,83,246ff53dcec171ae35b5b8c7fb36a0130f4bda71,"Fix from_scanpy (#596) +theislab,pertpy,theislab/pertpy,83,4,24,16,FALSE,https://github.com/theislab/pertpy,83,246ff53dcec171ae35b5b8c7fb36a0130f4bda71,"Fix from_scanpy (#596) * Start 0.8.0 @@ -195,10 +196,10 @@ Signed-off-by: zethson --------- Signed-off-by: zethson ",[![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/9110030715) [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/9110030723) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/9110030703) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/9110030708) -theislab,pertpy,theislab/pertpy,83,4,23,16,FALSE,https://github.com/theislab/pertpy,83,54b7f30d58905fa4e7ad83c4229281072e72b661,"Fix nox +theislab,pertpy,theislab/pertpy,83,4,24,16,FALSE,https://github.com/theislab/pertpy,83,54b7f30d58905fa4e7ad83c4229281072e72b661,"Fix nox Signed-off-by: zethson ",[![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446183) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446170) [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446165) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446171) -theislab,pertpy,theislab/pertpy,83,4,23,16,FALSE,https://github.com/theislab/pertpy,83,be4cce6b9d50f19ef5581bfb2aa1c3fb89e2ff4d,"submodule +theislab,pertpy,theislab/pertpy,83,4,24,16,FALSE,https://github.com/theislab/pertpy,83,be4cce6b9d50f19ef5581bfb2aa1c3fb89e2ff4d,"submodule Signed-off-by: zethson ",[![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8679592172) theislab,pertpy-datasets,theislab/pertpy-datasets,1,3,0,1,FALSE,https://github.com/theislab/pertpy-datasets,1,NA,NA,NA @@ -278,7 +279,7 @@ theislab,scvelo,theislab/scvelo,393,12,57,101,FALSE,https://github.com/theislab/ Co-authored-by: Philipp Weiler ",[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8665253017) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8665253018) theislab,scvelo_notebooks,theislab/scvelo_notebooks,26,2,2,13,FALSE,https://github.com/theislab/scvelo_notebooks,26,NA,NA,NA -theislab,sfaira,theislab/sfaira,133,8,166,13,FALSE,https://github.com/theislab/sfaira,133,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9104305264) +theislab,sfaira,theislab/sfaira,133,8,166,13,FALSE,https://github.com/theislab/sfaira,133,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9120814532) theislab,sfaira,theislab/sfaira,133,8,166,13,FALSE,https://github.com/theislab/sfaira,133,5fcf932c44613e6bf4063ef3075ad6062bf5d9a1,round restored counts in some affected datasets,[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) theislab,sfaira,theislab/sfaira,133,8,166,13,FALSE,https://github.com/theislab/sfaira,133,ceb14c946f699c38d18a32192b76d4639caf845e,fix download links,[![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) theislab,sfaira-portal,theislab/sfaira-portal,0,4,2,0,FALSE,https://github.com/theislab/sfaira-portal,0,NA,NA,NA @@ -286,7 +287,7 @@ theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theis theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,3,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA -theislab,single-cell-best-practices,theislab/single-cell-best-practices,652,18,56,143,FALSE,https://github.com/theislab/single-cell-best-practices,652,b7335cda573f62813f404f77ad4bb4bbe85f439d,"Latest pertpy for conditions nb (#266) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,656,19,57,144,FALSE,https://github.com/theislab/single-cell-best-practices,656,b7335cda573f62813f404f77ad4bb4bbe85f439d,"Latest pertpy for conditions nb (#266) * Switch to lastest jupyterbook version @@ -299,7 +300,7 @@ Signed-off-by: zethson --------- Signed-off-by: zethson ",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064601) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064600) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064597) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064598) -theislab,single-cell-best-practices,theislab/single-cell-best-practices,652,18,56,143,FALSE,https://github.com/theislab/single-cell-best-practices,652,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,656,19,57,144,FALSE,https://github.com/theislab/single-cell-best-practices,656,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) * scATAC_pp @@ -413,12 +414,12 @@ Signed-off-by: zethson Co-authored-by: xlancelottx Co-authored-by: zethson Co-authored-by: Anna Schaar ",[![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) -theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,105,6,0,10,FALSE,https://github.com/theislab/single-cell-transformer-papers,105,NA,NA,NA -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1301,30,21,438,FALSE,https://github.com/theislab/single-cell-tutorial,1301,NA,NA,NA +theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,106,6,0,10,FALSE,https://github.com/theislab/single-cell-transformer-papers,106,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1302,30,21,438,FALSE,https://github.com/theislab/single-cell-tutorial,1302,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,3,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,3,NA,NA,NA theislab,spapros,theislab/spapros,21,3,9,5,FALSE,https://github.com/theislab/spapros,21,e8a37c9e78039920a0792fc04f426ab062dbbf88,"Merge pull request #321 from theislab/patch_precommit -pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/9105034484) +pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/9121534217) theislab,spapros,theislab/spapros,21,3,9,5,FALSE,https://github.com/theislab/spapros,21,fe76ca8b70159739b33a7b6b48cd501e70732fde,"Merge pull request #348 from theislab/dependabot/pip/development/traitlets-5.14.3 [DEPENDABOT]: Bump traitlets from 5.14.2 to 5.14.3",[![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/9068325347) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/9068325350) [![](https://github.com/theislab/spapros/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/spapros/actions/runs/9068325357) [![](https://github.com/theislab/spapros/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/spapros/actions/runs/9068325338) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/9068325337) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/9068325344)
theislab/single-cell-best-practices65218561436561957144 @@ -86,10 +86,10 @@

GitHub Dashboard

theislab/single-cell-best-practices65218561436561957144 c06ca9
8 166 13 55bcbb
theislab/pertpy 83 42324 16 @@ -268,7 +268,7 @@

GitHub Dashboard

theislab/pertpy 83 42324 16 @@ -280,7 +280,7 @@

GitHub Dashboard

theislab/pertpy 83 42324 16 be4cce 9 5 - e8a37c
5bf0cd
theislab/geome15324 +f2a58e
theislab/graphcompass 15 2 7c4551
theislab/scanpydoc 12 6 940a9d
theislab/cellrank_notebooks 6 4 677784
theislab/moscot_notebooks6142bc71ed
theislab/ehrapy-datasets 5 2 0 06e1bb72f6a00
theislab/transcription_factor_activity
theislab/single-cell-tutorial13011302 30 21 438
theislab/single-cell-transformer-papers105106 6 0 10
theislab/cpa7576 4 14 15 13
theislab/Covid_meta_analysis248theislab/nicheformer2526 211
theislab/nicheformertheislab/Covid_meta_analysis 248 26211
theislab/interactive_plotting 1
theislab/moscot_notebooks6152
theislab/scatac_poisson_reproducibility 6 3 0 0
theislab/sfaira_tutorials 6 4 3 2
theislab/trVAE_reproducibility 6 3 2 5
theislab/2018_Angelidis 5 4 1 6
theislab/ehrapy-tutorials 5 3 0 2
theislab/flowVI 5 3 0 0
theislab/InterpretableAutoencoders 5 5 0 1
theislab/jump-cpg0016-segmentation 5 1 0 0
theislab/kbranches 5 7 0 0
theislab/scanpy-demo-czbiohub 5 5 0 5
theislab/2022_Tritschler_pancreas_cross_species 4 3 0 1
theislab/cellrank_reproducibility_preprint 4 2 0 0
theislab/covid-perturbation 4 3 0 0
theislab/extended-single-cell-best-practices-container 4 4 2 1
theislab/feature-attribution-sc 4 2 8 1
theislab/LODE 4 2 9 0
theislab/pancreatic-endocrinogenesis 4 3 0 6
theislab/pertpy-tutorials 4 4 1 7
theislab/perturbation-metrics 4 2 1 0
theislab/moscot_not 3 2 8 1
theislab/multires-consensus-clustering 3 4 9 0
theislab/nbconvertR 3 3 1 2
theislab/sc_analysis_template 3 3 0 0
theislab/singlecell_proteomics 3 5 6 3
theislab/ssl_in_scg 3 1 0 1
theislab/2020_iPS_Lung_Differentiation 2 5 0 2
theislab/2021_Aliluev_Tritschler_gut_HFD 2 4 0 1
theislab/atlas-feature-selection-benchmark 2 2 1 0
theislab/augurpy 2 2 10 0
theislab/bartseq-pipeline 2 4 0 3
theislab/campa_ana 2 4 0 0
theislab/covid_macrophages_integration 2 5 0 4
theislab/epicardiods_analysis 2 2 1 0
theislab/flexible_priors 2 2 0 0
theislab/gut_lineage 2 3 0 3
theislab/HPA_reproducibility 2 3 0 1
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