| theislab/single-cell-tutorial |
-1226 |
+1228 |
30 |
19 |
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@@ -722,867 +728,860 @@ Repos without Github Actions
0 |
-| theislab/scanpydoc |
-12 |
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| theislab/MetaMap |
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| theislab/scPoli_reproduce |
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| theislab/diffxpy_tutorials |
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| theislab/enrichment_analysis_celltype |
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| theislab/expiMap_reproducibility |
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| theislab/greatpy |
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| theislab/inVAE |
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| theislab/PathReg |
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| theislab/sc-best-practices-ce |
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| theislab/cpa-reproducibility |
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| theislab/gastrulation_analysis |
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| theislab/mouse_cross-condition_pancreatic_islet_atlas |
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| theislab/scCODA_reproducibility |
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| theislab/intercode |
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| theislab/scatac_poisson_reproducibility |
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| theislab/pancreatic-endocrinogenesis |
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| theislab/perturbation-metrics |
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| theislab/2022_Tritschler_pancreas_cross_species |
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| theislab/covid-perturbation |
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| theislab/sc_analysis_template |
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| theislab/singlecell_proteomics |
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| theislab/2021_Aliluev_Tritschler_gut_HFD |
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| theislab/covid_macrophages_integration |
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| theislab/HPA_reproducibility |
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| theislab/HRCA-reproducibility |
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| theislab/LineagePulse |
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| theislab/moscot_not |
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| theislab/multigrate_reproducibility |
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| theislab/scanpy_squidpy_demo_2021 |
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| theislab/svaeligr |
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| theislab/2020_iPS_Lung_Differentiation |
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| theislab/2021_PRMT7_regulates_Monocyte_Extravasation |
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| theislab/astrocytes_reprogramming_analysis |
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| theislab/autoencoderPS |
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| theislab/bartSeq |
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| theislab/countae |
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| theislab/ehrapy-cli |
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| theislab/ifcseq |
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| theislab/interaction-tools |
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| theislab/LungInjuryRegeneration |
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| theislab/moscot-framework_reproducibility |
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| theislab/tissue_reproducibility |
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| theislab/zebrafish_bipolarity |
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| theislab/2020_Inhibition_LTbetaR-signalling |
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| theislab/2022_Bakhti_pancreas_Syt13 |
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| theislab/archmap_admin |
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| theislab/archmap_doc |
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| theislab/atlas-feature-selection-benchmark |
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| theislab/collideseq_reproducibility |
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| theislab/consensus-clustering-evaluation |
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| theislab/dali |
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| theislab/edgepy |
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| theislab/ehrapy-reproducibility |
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| theislab/ELS_analysis |
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| theislab/GoBI_single_cell |
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| theislab/hadge-reproducibility |
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| theislab/icml_cbw_2022_clcvae |
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| theislab/integraph |
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| theislab/ipsc_ipd_analysis |
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| theislab/LungAgingAtlas |
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| theislab/MetaMap-web |
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| theislab/MRGR_stress_analysis |
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| theislab/multicpa-reproducibility |
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| theislab/organoid_dexamethason_stimulation |
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| theislab/pancreas-targeted_pharmacology |
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| theislab/reproducability_AutoGeneS |
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| theislab/reproducibility_AutoGeneS |
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| theislab/scanpy.org |
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| theislab/sc_ketamine_analysis |
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diff --git a/repos.csv b/repos.csv
index e3222ff..2aa1248 100644
--- a/repos.csv
+++ b/repos.csv
@@ -129,7 +129,7 @@ API Update, Transform and ToIterable classes.",[![](https://github.com/theislab/
theislab,geome,theislab/geome,13,3,4,4,FALSE,https://github.com/theislab/geome,13,5bf0cd07b2ea7fa224a37f69232542a9e686c5bf,"Merge pull request #31 from theislab/template-update
Automated template update from cookiecutter-scverse",[](https://github.com/theislab/geome/actions/runs/4904831582)
-theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,ab701f566b5ebf5058326ab3d270b2f0711846da,[status] 2024-01-04 12:11:14 UTC,[](https://github.com/theislab/gh-dashboard/actions/runs/7421562060)
+theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,62589063f9dcc4f7f54e42445fa9fff5c5456b99,[status] 2024-01-05 12:11:24 UTC,[](https://github.com/theislab/gh-dashboard/actions/runs/7431414384)
theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA
theislab,greatpy,theislab/greatpy,8,3,4,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA
theislab,gut_lineage,theislab/gut_lineage,2,3,0,3,FALSE,https://github.com/theislab/gut_lineage,2,NA,NA,NA
@@ -201,13 +201,11 @@ theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimul
theislab,paga,theislab/paga,176,10,21,30,FALSE,https://github.com/theislab/paga,176,NA,NA,NA
theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,7,0,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA
theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,4,3,0,5,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,4,NA,NA,NA
-theislab,pertpy,theislab/pertpy,65,4,30,15,FALSE,https://github.com/theislab/pertpy,65,404835c82f9a3d943b85973c10130303d090839d,"Revert ""Deleted JaxscgenPlot""
+theislab,pertpy,theislab/pertpy,67,4,31,15,FALSE,https://github.com/theislab/pertpy,67,404835c82f9a3d943b85973c10130303d090839d,"Revert ""Deleted JaxscgenPlot""
This reverts commit 161fc137c5a23320a5799a22cd4d7212b550bca9.",[](https://github.com/theislab/pertpy/actions/runs/4629618853)
-theislab,pertpy,theislab/pertpy,65,4,30,15,FALSE,https://github.com/theislab/pertpy,65,d00c5f9e7243d6b1984becf973509f5f8ae425fc,pre-commit,[](https://github.com/theislab/pertpy/actions/runs/6737423407)
-theislab,pertpy,theislab/pertpy,65,4,30,15,FALSE,https://github.com/theislab/pertpy,65,d0c028ba94de28b8029e8eee478ee11b3484f9c2,"Add enrichment tutorial
-
-Signed-off-by: zethson ",[](https://github.com/theislab/pertpy/actions/runs/7414850857) [](https://github.com/theislab/pertpy/actions/runs/7414850846) [](https://github.com/theislab/pertpy/actions/runs/7414850847) [](https://github.com/theislab/pertpy/actions/runs/7414850861)
+theislab,pertpy,theislab/pertpy,67,4,31,15,FALSE,https://github.com/theislab/pertpy,67,83c035045afb14697009881d415df9f250ba03dd,Replaced gallery images (#488),[](https://github.com/theislab/pertpy/actions/runs/7431067256)
+theislab,pertpy,theislab/pertpy,67,4,31,15,FALSE,https://github.com/theislab/pertpy,67,d00c5f9e7243d6b1984becf973509f5f8ae425fc,pre-commit,[](https://github.com/theislab/pertpy/actions/runs/6737423407)
theislab,pertpy-datasets,theislab/pertpy-datasets,1,3,0,1,FALSE,https://github.com/theislab/pertpy-datasets,1,NA,NA,NA
theislab,pertpy-tutorials,theislab/pertpy-tutorials,4,4,1,6,FALSE,https://github.com/theislab/pertpy-tutorials,4,NA,NA,NA
theislab,perturbation-metrics,theislab/perturbation-metrics,4,2,1,0,FALSE,https://github.com/theislab/perturbation-metrics,4,NA,NA,NA
@@ -231,20 +229,20 @@ theislab,scanpy-in-R,theislab/scanpy-in-R,12,3,1,0,FALSE,https://github.com/thei
theislab,scanpy.org,theislab/scanpy.org,0,7,1,0,FALSE,https://github.com/theislab/scanpy.org,0,NA,NA,NA
theislab,scanpy_neighbors,theislab/scanpy_neighbors,0,3,0,1,FALSE,https://github.com/theislab/scanpy_neighbors,0,NA,NA,NA
theislab,scanpy_squidpy_demo_2021,theislab/scanpy_squidpy_demo_2021,2,4,0,0,FALSE,https://github.com/theislab/scanpy_squidpy_demo_2021,2,NA,NA,NA
-theislab,scanpydoc,theislab/scanpydoc,12,6,4,5,FALSE,https://github.com/theislab/scanpydoc,12,NA,NA,NA
+theislab,scanpydoc,theislab/scanpydoc,12,6,3,5,FALSE,https://github.com/theislab/scanpydoc,12,396625bb13b50ef569075cd7b143eff5e927e0c4,Fix coverage (#114),[](https://github.com/theislab/scanpydoc/actions/runs/7424343432)
theislab,scarches,theislab/scarches,295,14,34,48,FALSE,https://github.com/theislab/scarches,295,NA,NA,NA
theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA
theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,6,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,6,NA,NA,NA
theislab,scgen,theislab/scgen,235,9,20,51,FALSE,https://github.com/theislab/scgen,235,d79e1f04233c30f9a4eb5b8d57718127909807d7,Merge pull request #87 from theislab/batch_corr_labels,[](https://github.com/theislab/scgen/actions/runs/6370224484)
theislab,scgen-reproducibility,theislab/scgen-reproducibility,18,4,5,8,FALSE,https://github.com/theislab/scgen-reproducibility,18,NA,NA,NA
-theislab,scib,theislab/scib,247,17,32,55,FALSE,https://github.com/theislab/scib,NA,ed3e2846414ca1e3dc07552c0eef1e68d82230d4,Bump version: 1.1.3 → 1.1.4,[](https://github.com/theislab/scib/actions/runs/5655324075)
+theislab,scib,theislab/scib,247,17,33,55,FALSE,https://github.com/theislab/scib,NA,ed3e2846414ca1e3dc07552c0eef1e68d82230d4,Bump version: 1.1.3 → 1.1.4,[](https://github.com/theislab/scib/actions/runs/5655324075)
theislab,scib-pipeline,theislab/scib-pipeline,45,7,14,26,FALSE,https://github.com/theislab/scib-pipeline,45,1180bcb35829d6d2984202268b4d1d11c511e20c,Merge branch 'fix/igraph_dependency' into rpy2_unpin,[](https://github.com/theislab/scib-pipeline/actions/runs/4118363146)
theislab,scib-reproducibility,theislab/scib-reproducibility,46,6,3,12,FALSE,https://github.com/theislab/scib-reproducibility,46,NA,NA,NA
-theislab,scvelo,theislab/scvelo,371,13,52,100,FALSE,https://github.com/theislab/scvelo,371,809632e03acc958a5f13d9321981af9c1cd95460,"Update `pyproject.toml` (#1166)
+theislab,scvelo,theislab/scvelo,371,13,53,100,FALSE,https://github.com/theislab/scvelo,371,809632e03acc958a5f13d9321981af9c1cd95460,"Update `pyproject.toml` (#1166)
Update version number.",[](https://github.com/theislab/scvelo/actions/runs/7076514631) [](https://github.com/theislab/scvelo/actions/runs/7076514630) [](https://github.com/theislab/scvelo/actions/runs/7076589652)
theislab,scvelo_notebooks,theislab/scvelo_notebooks,24,2,2,12,FALSE,https://github.com/theislab/scvelo_notebooks,24,NA,NA,NA
-theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[](https://github.com/theislab/sfaira/actions/runs/7416254096)
+theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[](https://github.com/theislab/sfaira/actions/runs/7427993114)
theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,5fcf932c44613e6bf4063ef3075ad6062bf5d9a1,round restored counts in some affected datasets,[](https://github.com/theislab/sfaira/actions/runs/7285672388) [](https://github.com/theislab/sfaira/actions/runs/7285672382) [](https://github.com/theislab/sfaira/actions/runs/7285672385) [](https://github.com/theislab/sfaira/actions/runs/7285672384)
theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,ceb14c946f699c38d18a32192b76d4639caf845e,fix download links,[](https://github.com/theislab/sfaira/actions/runs/6812817430)
theislab,sfaira-portal,theislab/sfaira-portal,0,4,2,0,FALSE,https://github.com/theislab/sfaira-portal,0,NA,NA,NA
@@ -252,10 +250,10 @@ theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theis
theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA
theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA
theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,3,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA
-theislab,single-cell-best-practices,theislab/single-cell-best-practices,550,15,46,118,FALSE,https://github.com/theislab/single-cell-best-practices,550,2e0a1f475d614c86bdc91c8544870e702f67c38e,"Update differential_gene_expression.ipynb (#256)
+theislab,single-cell-best-practices,theislab/single-cell-best-practices,553,15,46,118,FALSE,https://github.com/theislab/single-cell-best-practices,553,2e0a1f475d614c86bdc91c8544870e702f67c38e,"Update differential_gene_expression.ipynb (#256)
Corrected typographical and grammatical errors.",[](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718027) [](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718025) [](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718026) [](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718029)
-theislab,single-cell-best-practices,theislab/single-cell-best-practices,550,15,46,118,FALSE,https://github.com/theislab/single-cell-best-practices,550,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162)
+theislab,single-cell-best-practices,theislab/single-cell-best-practices,553,15,46,118,FALSE,https://github.com/theislab/single-cell-best-practices,553,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162)
* scATAC_pp
@@ -370,7 +368,7 @@ Co-authored-by: xlancelottx
Co-authored-by: zethson
Co-authored-by: Anna Schaar ",[](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952)
theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,24,2,0,2,FALSE,https://github.com/theislab/single-cell-transformer-papers,24,NA,NA,NA
-theislab,single-cell-tutorial,theislab/single-cell-tutorial,1226,30,19,432,FALSE,https://github.com/theislab/single-cell-tutorial,1226,NA,NA,NA
+theislab,single-cell-tutorial,theislab/single-cell-tutorial,1228,30,19,432,FALSE,https://github.com/theislab/single-cell-tutorial,1228,NA,NA,NA
theislab,singlecell_proteomics,theislab/singlecell_proteomics,3,4,4,3,FALSE,https://github.com/theislab/singlecell_proteomics,3,NA,NA,NA
theislab,spapros,theislab/spapros,20,3,15,5,FALSE,https://github.com/theislab/spapros,20,642fb34d2ccbb1bb8730b239840bf1bfe06701f8,"[DEPENDABOT]: Bump importlib-resources from 5.12.0 to 6.1.1 in /docs
@@ -389,7 +387,7 @@ updated-dependencies:
Signed-off-by: dependabot[bot] ",[](https://github.com/theislab/spapros/actions/runs/6854088652) [](https://github.com/theislab/spapros/actions/runs/6854088648)
theislab,spapros,theislab/spapros,20,3,15,5,FALSE,https://github.com/theislab/spapros,20,c4c0903758ecb1acd0e16c1d227e59e8be1e28de,"Merge pull request #288 from theislab/development
-Mention python package in docs",[](https://github.com/theislab/spapros/actions/runs/5980912686) [](https://github.com/theislab/spapros/actions/runs/7416871607)
+Mention python package in docs",[](https://github.com/theislab/spapros/actions/runs/5980912686) [](https://github.com/theislab/spapros/actions/runs/7428525456)
theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,NA,NA,NA
theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA
theislab,spapros_reproducibility,theislab/spapros_reproducibility,0,1,1,0,FALSE,https://github.com/theislab/spapros_reproducibility,0,NA,NA,NA
@@ -127,7 +127,7 @@ 
-
