diff --git a/README.md b/README.md index bbe0c26..23f24c0 100644 --- a/README.md +++ b/README.md @@ -2,66 +2,66 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-02-20 12:09:52 UTC +2024-02-21 12:09:58 UTC -| Repo | Stars | Subscribers | Issues | Forks | Status | Commit | -|:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 584 | 16 | 49 | 127 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718026) | 2e0a1f | -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 584 | 16 | 49 | 127 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920583) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920585) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920584) | 83f34d | -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 584 | 16 | 49 | 127 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | -| [theislab/scvelo](https://github.com/theislab/scvelo) | 379 | 13 | 60 | 102 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/7898495265) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/7898495278) | 3f0a61 | -| [theislab/scvelo](https://github.com/theislab/scvelo) | 379 | 13 | 60 | 102 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/7076589652) | 809632 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 285 | 8 | 13 | 36 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/7952728492) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/7952784236) | 2ce2c7 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 285 | 8 | 13 | 36 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/7005093203) | c11a86 | -| [theislab/scib](https://github.com/theislab/scib) | 255 | 16 | 36 | 57 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/7468185443) | d42f91 | -| [theislab/scgen](https://github.com/theislab/scgen) | 238 | 9 | 19 | 51 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 131 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7966495781) | 55bcbb | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 131 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 131 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | -| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 117 | 6 | 18 | 22 | [![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/7558891230) | 9d557f | -| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 108 | 6 | 14 | 15 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/7970072348) | 297bf4 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 101 | 7 | 43 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 101 | 7 | 43 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7901350354) | aa6039 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 101 | 7 | 43 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7260760638) | ea6b44 | -| [theislab/ncem](https://github.com/theislab/ncem) | 96 | 6 | 24 | 12 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | -| [theislab/ncem](https://github.com/theislab/ncem) | 96 | 6 | 24 | 12 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | -| [theislab/moscot](https://github.com/theislab/moscot) | 82 | 3 | 36 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/6456571831) | b23360 | -| [theislab/moscot](https://github.com/theislab/moscot) | 82 | 3 | 36 | 6 | [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/7971127715) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/7971127714) | ee31de | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 70 | 4 | 31 | 15 | [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7972059435) [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7972059439) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7972059438) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7972059420) | 48ccd7 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 70 | 4 | 31 | 15 | [![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446183) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446170) [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446165) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446171) | 54b7f3 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 70 | 4 | 31 | 15 | [![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) | d00c5f | -| [theislab/destiny](https://github.com/theislab/destiny) | 67 | 5 | 30 | 12 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) | 300eb2 | -| [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 50 | 7 | 17 | 27 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | -| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825767) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825761) | 11ffbb | -| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | -| [theislab/spapros](https://github.com/theislab/spapros) | 21 | 3 | 15 | 5 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/6854088652) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/6854088648) | 642fb3 | -| [theislab/spapros](https://github.com/theislab/spapros) | 21 | 3 | 15 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/7523141362) | c4c090 | -| [theislab/hadge](https://github.com/theislab/hadge) | 18 | 3 | 7 | 5 | [![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/7828889692) [![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/7828889695) | 146009 | -| [theislab/hadge](https://github.com/theislab/hadge) | 18 | 3 | 7 | 5 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | -| [theislab/geome](https://github.com/theislab/geome) | 13 | 3 | 4 | 4 | [![](https://github.com/theislab/geome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/geome/actions/runs/7921988741) [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/7921988747) | 294880 | -| [theislab/geome](https://github.com/theislab/geome) | 13 | 3 | 4 | 4 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | -| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 2 | 5 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/7970070992) | 340c99 | -| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | -| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 3 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/7952758394) | a14755 | -| [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 5 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/4510904353) | cb7707 | -| [theislab/graphcompass](https://github.com/theislab/graphcompass) | 5 | 2 | 0 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | -| [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 3 | 1 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/7102882080) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/7102882073) | 9ab01c | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/7973097323) | 614596 | -| [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/6140914377) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/6140914379) | 1f47f4 | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | +| Repo | Stars | Subscribers | Issues | Forks | Status | Commit | +|:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 585 | 16 | 49 | 128 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718026) | 2e0a1f | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 585 | 16 | 49 | 128 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920583) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920585) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920584) | 83f34d | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 585 | 16 | 49 | 128 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | +| [theislab/scvelo](https://github.com/theislab/scvelo) | 379 | 13 | 62 | 102 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/7076589652) | 809632 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 285 | 8 | 13 | 36 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/7952728492) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/7952784236) | 2ce2c7 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 285 | 8 | 13 | 36 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/7005093203) | c11a86 | +| [theislab/scib](https://github.com/theislab/scib) | 256 | 16 | 36 | 57 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/7468185443) | d42f91 | +| [theislab/scgen](https://github.com/theislab/scgen) | 238 | 9 | 19 | 51 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 131 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7981791150) | 55bcbb | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 131 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 131 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | +| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 117 | 6 | 18 | 22 | [![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/7558891230) | 9d557f | +| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 108 | 6 | 14 | 15 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/7970072348) | 297bf4 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 102 | 7 | 42 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7987891908) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7987891910) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7987891917) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7987891906) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7987891907) | 82be78 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 102 | 7 | 42 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 102 | 7 | 42 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7260760638) | ea6b44 | +| [theislab/ncem](https://github.com/theislab/ncem) | 96 | 6 | 24 | 12 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | +| [theislab/ncem](https://github.com/theislab/ncem) | 96 | 6 | 24 | 12 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | +| [theislab/moscot](https://github.com/theislab/moscot) | 82 | 3 | 37 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/6456571831) | b23360 | +| [theislab/moscot](https://github.com/theislab/moscot) | 82 | 3 | 37 | 6 | [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/7971127715) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/7971127714) | ee31de | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 70 | 4 | 32 | 15 | [![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446183) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446170) [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446165) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446171) | 54b7f3 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 70 | 4 | 32 | 15 | [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7987875438) [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7987875434) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7987875430) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7987875421) | 9dbe3b | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 70 | 4 | 32 | 15 | [![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) | d00c5f | +| [theislab/destiny](https://github.com/theislab/destiny) | 67 | 5 | 30 | 12 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) | 300eb2 | +| [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 50 | 7 | 17 | 27 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | +| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825767) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825761) | 11ffbb | +| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | +| [theislab/spapros](https://github.com/theislab/spapros) | 21 | 3 | 15 | 5 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/6854088652) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/6854088648) | 642fb3 | +| [theislab/spapros](https://github.com/theislab/spapros) | 21 | 3 | 15 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/7523141362) | c4c090 | +| [theislab/hadge](https://github.com/theislab/hadge) | 18 | 3 | 7 | 5 | [![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/7828889692) [![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/7828889695) | 146009 | +| [theislab/hadge](https://github.com/theislab/hadge) | 18 | 3 | 7 | 5 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | +| [theislab/geome](https://github.com/theislab/geome) | 13 | 3 | 4 | 4 | [![](https://github.com/theislab/geome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/geome/actions/runs/7921988741) [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/7921988747) | 294880 | +| [theislab/geome](https://github.com/theislab/geome) | 13 | 3 | 4 | 4 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | +| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 2 | 5 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/7970070992) | 340c99 | +| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | +| [theislab/graphcompass](https://github.com/theislab/graphcompass) | 6 | 2 | 0 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | +| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 3 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/7952758394) | a14755 | +| [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 5 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/4510904353) | cb7707 | +| [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 3 | 1 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/7102882080) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/7102882073) | 9ab01c | +| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 3 | 3 | 3 | 1 | [![](https://github.com/theislab/ehrdata/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/7988591719) [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/7988591721) | a4b96b | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/7988662540) | ae120c | +| [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/6140914377) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/6140914379) | 1f47f4 | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | ## Repos without Github Actions | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1248 | 30 | 21 | 434 | -| [theislab/scarches](https://github.com/theislab/scarches) | 296 | 14 | 35 | 48 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1248 | 30 | 21 | 433 | +| [theislab/scarches](https://github.com/theislab/scarches) | 295 | 14 | 35 | 48 | | [theislab/dca](https://github.com/theislab/dca) | 228 | 11 | 31 | 68 | -| [theislab/paga](https://github.com/theislab/paga) | 182 | 10 | 21 | 31 | +| [theislab/paga](https://github.com/theislab/paga) | 181 | 10 | 21 | 31 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 168 | 6 | 106 | 22 | -| [theislab/kBET](https://github.com/theislab/kBET) | 136 | 9 | 7 | 23 | +| [theislab/kBET](https://github.com/theislab/kBET) | 137 | 9 | 7 | 23 | | [theislab/scCODA](https://github.com/theislab/scCODA) | 127 | 9 | 5 | 23 | | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 119 | 6 | 6 | 10 | | [theislab/chemCPA](https://github.com/theislab/chemCPA) | 83 | 4 | 8 | 22 | @@ -69,8 +69,8 @@ GitHub Dashboard | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 53 | 6 | 4 | 8 | | [theislab/trVAE](https://github.com/theislab/trVAE) | 52 | 7 | 2 | 10 | | [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 48 | 6 | 3 | 13 | +| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 43 | 2 | 0 | 4 | | [theislab/spatial_scog_workshop_2022](https://github.com/theislab/spatial_scog_workshop_2022) | 42 | 9 | 0 | 23 | -| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 41 | 2 | 0 | 4 | | [theislab/pseudodynamics](https://github.com/theislab/pseudodynamics) | 39 | 7 | 0 | 6 | | [theislab/tcellmatch](https://github.com/theislab/tcellmatch) | 37 | 9 | 3 | 7 | | [theislab/scArches-reproducibility](https://github.com/theislab/scArches-reproducibility) | 31 | 5 | 5 | 1 | @@ -139,7 +139,6 @@ GitHub Dashboard | [theislab/perturbation-metrics](https://github.com/theislab/perturbation-metrics) | 4 | 2 | 1 | 0 | | [theislab/2022_Tritschler_pancreas_cross_species](https://github.com/theislab/2022_Tritschler_pancreas_cross_species) | 3 | 3 | 0 | 1 | | [theislab/covid-perturbation](https://github.com/theislab/covid-perturbation) | 3 | 3 | 0 | 0 | -| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 3 | 3 | 3 | 1 | | [theislab/moscot_not](https://github.com/theislab/moscot_not) | 3 | 2 | 8 | 1 | | [theislab/multires-consensus-clustering](https://github.com/theislab/multires-consensus-clustering) | 3 | 4 | 9 | 0 | | [theislab/nbconvertR](https://github.com/theislab/nbconvertR) | 3 | 3 | 1 | 2 | diff --git a/index.html b/index.html index 21d8988..65c8093 100644 --- a/index.html +++ b/index.html @@ -49,15 +49,15 @@

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- - - - - - - - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + diff --git a/repos.csv b/repos.csv index ccdda91..a1e64d0 100644 --- a/repos.csv +++ b/repos.csv @@ -90,16 +90,16 @@ theislab,diffxpy,theislab/diffxpy,168,6,106,22,FALSE,https://github.com/theislab theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA theislab,disent,theislab/disent,6,3,0,0,FALSE,https://github.com/theislab/disent,6,NA,NA,NA theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA -theislab,ehrapy,theislab/ehrapy,101,7,43,14,FALSE,https://github.com/theislab/ehrapy,101,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows - -Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) -theislab,ehrapy,theislab/ehrapy,101,7,43,14,FALSE,https://github.com/theislab/ehrapy,101,aa60399e2a120cf1cae5419d21415a2966c21844,"[pre-commit.ci] pre-commit autoupdate (#656) +theislab,ehrapy,theislab/ehrapy,102,7,42,14,FALSE,https://github.com/theislab/ehrapy,102,82be78ebbc986c940ee0801f5bbda39c33eaf6ff,"[pre-commit.ci] pre-commit autoupdate (#659) updates: -- [github.com/astral-sh/ruff-pre-commit: v0.2.0 → v0.2.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.2.0...v0.2.1) +- [github.com/astral-sh/ruff-pre-commit: v0.2.1 → v0.2.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.2.1...v0.2.2) -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7901350354) -theislab,ehrapy,theislab/ehrapy,101,7,43,14,FALSE,https://github.com/theislab/ehrapy,101,ea6b4430d58d4ff8660eb15bd5db4d248f1c74ea,"Submodule +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7987891908) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7987891910) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7987891917) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7987891906) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7987891907) +theislab,ehrapy,theislab/ehrapy,102,7,42,14,FALSE,https://github.com/theislab/ehrapy,102,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows + +Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) +theislab,ehrapy,theislab/ehrapy,102,7,42,14,FALSE,https://github.com/theislab/ehrapy,102,ea6b4430d58d4ff8660eb15bd5db4d248f1c74ea,"Submodule Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7260760638) theislab,ehrapy-cli,theislab/ehrapy-cli,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-cli,1,NA,NA,NA @@ -107,7 +107,7 @@ theislab,ehrapy-datasets,theislab/ehrapy-datasets,5,2,0,2,FALSE,https://github.c theislab,ehrapy-reproducibility,theislab/ehrapy-reproducibility,0,2,0,0,FALSE,https://github.com/theislab/ehrapy-reproducibility,0,NA,NA,NA theislab,ehrapy-site,theislab/ehrapy-site,1,2,0,0,FALSE,https://github.com/theislab/ehrapy-site,1,NA,NA,NA theislab,ehrapy-tutorials,theislab/ehrapy-tutorials,5,3,1,2,FALSE,https://github.com/theislab/ehrapy-tutorials,5,NA,NA,NA -theislab,ehrdata,theislab/ehrdata,3,3,3,1,FALSE,https://github.com/theislab/ehrdata,3,NA,NA,NA +theislab,ehrdata,theislab/ehrdata,3,3,3,1,FALSE,https://github.com/theislab/ehrdata,3,a4b96b2d401da805f6cd39773bb058d3b5790255,greatly improve the efficiency of the bottleneck - adding awkward array to adata.obsm using dataframe,[![](https://github.com/theislab/ehrdata/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/7988591719) [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/7988591721) theislab,enrichment_analysis_celltype,theislab/enrichment_analysis_celltype,9,5,0,4,FALSE,https://github.com/theislab/enrichment_analysis_celltype,9,NA,NA,NA theislab,epicardiods_analysis,theislab/epicardiods_analysis,2,2,1,0,FALSE,https://github.com/theislab/epicardiods_analysis,2,NA,NA,NA theislab,expiMap_reproducibility,theislab/expiMap_reproducibility,8,5,3,4,FALSE,https://github.com/theislab/expiMap_reproducibility,8,NA,NA,NA @@ -120,9 +120,9 @@ theislab,geome,theislab/geome,13,3,4,4,FALSE,https://github.com/theislab/geome,1 theislab,geome,theislab/geome,13,3,4,4,FALSE,https://github.com/theislab/geome,13,5bf0cd07b2ea7fa224a37f69232542a9e686c5bf,"Merge pull request #31 from theislab/template-update Automated template update from cookiecutter-scverse",[![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) -theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,614596702786aa2fed4912072b4b2bb160c225a5,[status] 2024-02-19 12:12:42 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/7973097323) +theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,ae120ca0cc917a0ae14395014c3799b7107584d9,[status] 2024-02-20 12:11:25 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/7988662540) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA -theislab,graphcompass,theislab/graphcompass,5,2,0,0,FALSE,https://github.com/theislab/graphcompass,5,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) +theislab,graphcompass,theislab/graphcompass,6,2,0,0,FALSE,https://github.com/theislab/graphcompass,6,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,8,3,4,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA theislab,gut_lineage,theislab/gut_lineage,2,3,0,3,FALSE,https://github.com/theislab/gut_lineage,2,NA,NA,NA theislab,hadge,theislab/hadge,18,3,7,5,FALSE,https://github.com/theislab/hadge,18,1460090415d2af10695257a55348a34406ff7d1a,Add zenodo doi,[![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/7828889692) [![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/7828889695) @@ -157,16 +157,16 @@ theislab,interaction-tools,theislab/interaction-tools,1,4,0,0,FALSE,https://gith theislab,interactive_plotting,theislab/interactive_plotting,21,4,11,7,FALSE,https://github.com/theislab/interactive_plotting,21,NA,NA,NA theislab,intercode,theislab/intercode,6,3,1,1,FALSE,https://github.com/theislab/intercode,6,NA,NA,NA theislab,ipsc_ipd_analysis,theislab/ipsc_ipd_analysis,0,3,0,0,FALSE,https://github.com/theislab/ipsc_ipd_analysis,0,NA,NA,NA -theislab,kBET,theislab/kBET,136,9,7,23,FALSE,https://github.com/theislab/kBET,136,NA,NA,NA +theislab,kBET,theislab/kBET,137,9,7,23,FALSE,https://github.com/theislab/kBET,137,NA,NA,NA theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/kbranches,5,NA,NA,NA theislab,masterpraktikum_ssl_segmentation,theislab/masterpraktikum_ssl_segmentation,0,2,0,0,FALSE,https://github.com/theislab/masterpraktikum_ssl_segmentation,0,NA,NA,NA -theislab,moscot,theislab/moscot,82,3,36,6,FALSE,https://github.com/theislab/moscot,82,b233601b6aecd7259aaa1a5dba107f2963420614,"Update/lrgw2 (#613) +theislab,moscot,theislab/moscot,82,3,37,6,FALSE,https://github.com/theislab/moscot,82,b233601b6aecd7259aaa1a5dba107f2963420614,"Update/lrgw2 (#613) Co-authored-by: Arina Danilina Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/6456571831) -theislab,moscot,theislab/moscot,82,3,36,6,FALSE,https://github.com/theislab/moscot,82,ee31deb98183d3bc13595fa55865259d6c7d85d4,"Merge pull request #660 from theislab/pre-commit-ci-update-config +theislab,moscot,theislab/moscot,82,3,37,6,FALSE,https://github.com/theislab/moscot,82,ee31deb98183d3bc13595fa55865259d6c7d85d4,"Merge pull request #660 from theislab/pre-commit-ci-update-config [pre-commit.ci] pre-commit autoupdate",[![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/7971127715) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/7971127714) theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,1,2,1,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,1,NA,NA,NA @@ -192,16 +192,14 @@ theislab,ncem_benchmarks,theislab/ncem_benchmarks,8,4,4,2,FALSE,https://github.c theislab,ncem_tutorials,theislab/ncem_tutorials,10,4,5,0,FALSE,https://github.com/theislab/ncem_tutorials,10,NA,NA,NA theislab,neural_organoid_atlas,theislab/neural_organoid_atlas,6,4,2,1,FALSE,https://github.com/theislab/neural_organoid_atlas,6,NA,NA,NA theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimulation,0,3,0,1,FALSE,https://github.com/theislab/organoid_dexamethason_stimulation,0,NA,NA,NA -theislab,paga,theislab/paga,182,10,21,31,FALSE,https://github.com/theislab/paga,182,NA,NA,NA +theislab,paga,theislab/paga,181,10,21,31,FALSE,https://github.com/theislab/paga,181,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,7,0,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,4,3,0,5,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,4,NA,NA,NA -theislab,pertpy,theislab/pertpy,70,4,31,15,FALSE,https://github.com/theislab/pertpy,70,48ccd7f05fed9e28a3431e6395043becffe0257c,"Fix MILO docstrings - -Signed-off-by: zethson ",[![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7972059435) [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7972059439) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7972059438) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7972059420) -theislab,pertpy,theislab/pertpy,70,4,31,15,FALSE,https://github.com/theislab/pertpy,70,54b7f30d58905fa4e7ad83c4229281072e72b661,"Fix nox +theislab,pertpy,theislab/pertpy,70,4,32,15,FALSE,https://github.com/theislab/pertpy,70,54b7f30d58905fa4e7ad83c4229281072e72b661,"Fix nox Signed-off-by: zethson ",[![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446183) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446170) [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446165) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446171) -theislab,pertpy,theislab/pertpy,70,4,31,15,FALSE,https://github.com/theislab/pertpy,70,d00c5f9e7243d6b1984becf973509f5f8ae425fc,pre-commit,[![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) +theislab,pertpy,theislab/pertpy,70,4,32,15,FALSE,https://github.com/theislab/pertpy,70,9dbe3bc5465058f5ec9cb0db6297bab573509dd8,Add coda to README instructions,[![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7987875438) [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7987875434) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7987875430) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7987875421) +theislab,pertpy,theislab/pertpy,70,4,32,15,FALSE,https://github.com/theislab/pertpy,70,d00c5f9e7243d6b1984becf973509f5f8ae425fc,pre-commit,[![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) theislab,pertpy-datasets,theislab/pertpy-datasets,1,3,0,1,FALSE,https://github.com/theislab/pertpy-datasets,1,NA,NA,NA theislab,pertpy-tutorials,theislab/pertpy-tutorials,4,4,2,7,FALSE,https://github.com/theislab/pertpy-tutorials,4,NA,NA,NA theislab,perturbation-metrics,theislab/perturbation-metrics,4,2,1,0,FALSE,https://github.com/theislab/perturbation-metrics,4,NA,NA,NA @@ -228,12 +226,12 @@ theislab,scanpy_squidpy_demo_2021,theislab/scanpy_squidpy_demo_2021,2,4,0,0,FALS theislab,scanpydoc,theislab/scanpydoc,12,6,2,5,FALSE,https://github.com/theislab/scanpydoc,12,340c99807be0d73544dd0e660dbdc5e1d2709786,"[pre-commit.ci] pre-commit autoupdate (#139) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/7970070992) -theislab,scarches,theislab/scarches,296,14,35,48,FALSE,https://github.com/theislab/scarches,296,NA,NA,NA +theislab,scarches,theislab/scarches,295,14,35,48,FALSE,https://github.com/theislab/scarches,295,NA,NA,NA theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,6,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,6,NA,NA,NA theislab,scgen,theislab/scgen,238,9,19,51,FALSE,https://github.com/theislab/scgen,238,d79e1f04233c30f9a4eb5b8d57718127909807d7,Merge pull request #87 from theislab/batch_corr_labels,[![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) theislab,scgen-reproducibility,theislab/scgen-reproducibility,17,4,5,8,FALSE,https://github.com/theislab/scgen-reproducibility,17,NA,NA,NA -theislab,scib,theislab/scib,255,16,36,57,FALSE,https://github.com/theislab/scib,NA,d42f919b5b0aac86f19937d4d4d02bf2e4d8bdbd,"Update dependencies (#396) +theislab,scib,theislab/scib,256,16,36,57,FALSE,https://github.com/theislab/scib,NA,d42f919b5b0aac86f19937d4d4d02bf2e4d8bdbd,"Update dependencies (#396) * pin pandas 2 and adapt breaking code @@ -242,20 +240,11 @@ theislab,scib,theislab/scib,255,16,36,57,FALSE,https://github.com/theislab/scib, * set minimum python version to 3.8",[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/7468185443) theislab,scib-pipeline,theislab/scib-pipeline,50,7,17,27,FALSE,https://github.com/theislab/scib-pipeline,50,1180bcb35829d6d2984202268b4d1d11c511e20c,Merge branch 'fix/igraph_dependency' into rpy2_unpin,[![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) theislab,scib-reproducibility,theislab/scib-reproducibility,48,6,3,13,FALSE,https://github.com/theislab/scib-reproducibility,48,NA,NA,NA -theislab,scvelo,theislab/scvelo,379,13,60,102,FALSE,https://github.com/theislab/scvelo,379,3f0a6124f93fd6888684eee736228c1fe3c63982,"Remove hard `scvi-tools` dependency (#1185) - -* Remove hard `scvi-tools` dependency - -* Skip VELOVI tests if `scvi-tools` not installed - -* Remove `torch` dependency - -* Remove unused `skip_file`",[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/7898495265) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/7898495278) -theislab,scvelo,theislab/scvelo,379,13,60,102,FALSE,https://github.com/theislab/scvelo,379,809632e03acc958a5f13d9321981af9c1cd95460,"Update `pyproject.toml` (#1166) +theislab,scvelo,theislab/scvelo,379,13,62,102,FALSE,https://github.com/theislab/scvelo,379,809632e03acc958a5f13d9321981af9c1cd95460,"Update `pyproject.toml` (#1166) Update version number.",[![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/7076589652) theislab,scvelo_notebooks,theislab/scvelo_notebooks,26,2,2,12,FALSE,https://github.com/theislab/scvelo_notebooks,26,NA,NA,NA -theislab,sfaira,theislab/sfaira,131,8,166,13,FALSE,https://github.com/theislab/sfaira,131,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7966495781) +theislab,sfaira,theislab/sfaira,131,8,166,13,FALSE,https://github.com/theislab/sfaira,131,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7981791150) theislab,sfaira,theislab/sfaira,131,8,166,13,FALSE,https://github.com/theislab/sfaira,131,5fcf932c44613e6bf4063ef3075ad6062bf5d9a1,round restored counts in some affected datasets,[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) theislab,sfaira,theislab/sfaira,131,8,166,13,FALSE,https://github.com/theislab/sfaira,131,ceb14c946f699c38d18a32192b76d4639caf845e,fix download links,[![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) theislab,sfaira-portal,theislab/sfaira-portal,0,4,2,0,FALSE,https://github.com/theislab/sfaira-portal,0,NA,NA,NA @@ -263,13 +252,13 @@ theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theis theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,3,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA -theislab,single-cell-best-practices,theislab/single-cell-best-practices,584,16,49,127,FALSE,https://github.com/theislab/single-cell-best-practices,584,2e0a1f475d614c86bdc91c8544870e702f67c38e,"Update differential_gene_expression.ipynb (#256) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,585,16,49,128,FALSE,https://github.com/theislab/single-cell-best-practices,585,2e0a1f475d614c86bdc91c8544870e702f67c38e,"Update differential_gene_expression.ipynb (#256) Corrected typographical and grammatical errors.",[![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718026) -theislab,single-cell-best-practices,theislab/single-cell-best-practices,584,16,49,127,FALSE,https://github.com/theislab/single-cell-best-practices,584,83f34dabe86da58240a9d08e118c2f8a8dc99079,"Update raw_data_processing.md +theislab,single-cell-best-practices,theislab/single-cell-best-practices,585,16,49,128,FALSE,https://github.com/theislab/single-cell-best-practices,585,83f34dabe86da58240a9d08e118c2f8a8dc99079,"Update raw_data_processing.md avoid missing piscem path during index generation",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920583) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920585) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7832920584) -theislab,single-cell-best-practices,theislab/single-cell-best-practices,584,16,49,127,FALSE,https://github.com/theislab/single-cell-best-practices,584,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,585,16,49,128,FALSE,https://github.com/theislab/single-cell-best-practices,585,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) * scATAC_pp @@ -383,8 +372,8 @@ Signed-off-by: zethson Co-authored-by: xlancelottx Co-authored-by: zethson Co-authored-by: Anna Schaar ",[![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) -theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,41,2,0,4,FALSE,https://github.com/theislab/single-cell-transformer-papers,41,NA,NA,NA -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1248,30,21,434,FALSE,https://github.com/theislab/single-cell-tutorial,1248,NA,NA,NA +theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,43,2,0,4,FALSE,https://github.com/theislab/single-cell-transformer-papers,43,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1248,30,21,433,FALSE,https://github.com/theislab/single-cell-tutorial,1248,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,3,5,5,3,FALSE,https://github.com/theislab/singlecell_proteomics,3,NA,NA,NA theislab,spapros,theislab/spapros,21,3,15,5,FALSE,https://github.com/theislab/spapros,21,642fb34d2ccbb1bb8730b239840bf1bfe06701f8,"[DEPENDABOT]: Bump importlib-resources from 5.12.0 to 6.1.1 in /docs
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theislab/single-cell-best-practices584585 16 49127128
theislab/single-cell-best-practices584585 16 49127128 c06ca9
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theislab/scgen 238 9 d79e1f
theislab/sfaira 131 8 166 13 55bcbb
theislab/sfaira 131 8 5fcf93
theislab/sfaira 131 8 ceb14c
theislab/zellkonverter 117 6 9d557f
theislab/anndata2ri 108 6 297bf4
theislab/ehrapy101102 74342 1484d33c + + + +82be78
theislab/ehrapy101102 74342 14aa603984d33c
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theislab/pertpy7043115 - - -48ccd7
theislab/pertpy 70 43132 15 @@ -298,12 +280,24 @@

GitHub Dashboard

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