diff --git a/README.md b/README.md index 2fcbeb2..e5684fd 100644 --- a/README.md +++ b/README.md @@ -2,25 +2,25 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-05-12 12:13:27 UTC +2024-05-13 12:13:48 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 647 | 18 | 56 | 142 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064601) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064600) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064597) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064598) | b7335c | -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 647 | 18 | 56 | 142 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 648 | 18 | 56 | 142 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064601) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064600) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064597) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064598) | b7335c | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 648 | 18 | 56 | 142 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | | [theislab/scvelo](https://github.com/theislab/scvelo) | 392 | 12 | 57 | 101 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | | [theislab/scvelo](https://github.com/theislab/scvelo) | 392 | 12 | 57 | 101 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8665253017) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8665253018) | f21651 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 305 | 8 | 18 | 38 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8601715542) | 08f1c9 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 305 | 8 | 18 | 38 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8962180577) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8962240926) | 607491 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 305 | 8 | 17 | 38 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8601715542) | 08f1c9 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 305 | 8 | 17 | 38 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/9055262988) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/9055323922) | 607491 | | [theislab/scib](https://github.com/theislab/scib) | 276 | 14 | 36 | 59 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/8788684911) | 9c5a93 | | [theislab/scgen](https://github.com/theislab/scgen) | 247 | 9 | 19 | 52 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 133 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9047321536) | 55bcbb | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 133 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9055195222) | 55bcbb | | [theislab/sfaira](https://github.com/theislab/sfaira) | 133 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 133 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | | [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 132 | 5 | 23 | 26 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/8968608190) | 7b1186 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 118 | 5 | 32 | 15 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8390347476) | 27d854 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 118 | 5 | 32 | 15 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 118 | 5 | 32 | 15 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/9014066099) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/9014066102) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/9014066094) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/9014066100) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/9014066105) | c21758 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 119 | 5 | 33 | 15 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8390347476) | 27d854 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 119 | 5 | 33 | 15 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/9061869585) | 2ea162 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 119 | 5 | 33 | 15 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | | [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 114 | 7 | 15 | 16 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/8981634245) | e8ad70 | | [theislab/ncem](https://github.com/theislab/ncem) | 98 | 6 | 26 | 13 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | | [theislab/ncem](https://github.com/theislab/ncem) | 98 | 6 | 26 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | @@ -30,20 +30,20 @@ GitHub Dashboard | [theislab/pertpy](https://github.com/theislab/pertpy) | 82 | 4 | 25 | 16 | [![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8679592172) | be4cce | | [theislab/destiny](https://github.com/theislab/destiny) | 67 | 5 | 31 | 12 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) | 300eb2 | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 47 | 9 | [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | -| [theislab/hadge](https://github.com/theislab/hadge) | 23 | 3 | 12 | 5 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | -| [theislab/hadge](https://github.com/theislab/hadge) | 23 | 3 | 12 | 5 | [![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/8468875722) [![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/8468875726) | 6441e6 | +| [theislab/hadge](https://github.com/theislab/hadge) | 23 | 3 | 13 | 5 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | +| [theislab/hadge](https://github.com/theislab/hadge) | 23 | 3 | 13 | 5 | [![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/8468875722) [![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/8468875726) | 6441e6 | | [theislab/spapros](https://github.com/theislab/spapros) | 21 | 3 | 8 | 5 | [![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/8975176142) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/8975176135) [![](https://github.com/theislab/spapros/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/spapros/actions/runs/8975176133) [![](https://github.com/theislab/spapros/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/spapros/actions/runs/8975176148) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/8975176149) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/8975176134) | 945076 | -| [theislab/spapros](https://github.com/theislab/spapros) | 21 | 3 | 8 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/9047860696) | e8a37c | +| [theislab/spapros](https://github.com/theislab/spapros) | 21 | 3 | 8 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/9055851283) | e8a37c | | [theislab/geome](https://github.com/theislab/geome) | 15 | 3 | 0 | 4 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | | [theislab/geome](https://github.com/theislab/geome) | 15 | 3 | 0 | 4 | [![](https://github.com/theislab/geome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/geome/actions/runs/8900509976) [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/8905593851) | 991a31 | | [theislab/graphcompass](https://github.com/theislab/graphcompass) | 15 | 2 | 0 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/8981634217) | 4c97fd | | [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | -| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 4 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/8962213087) | bc71ed | +| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 4 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/9055295814) | bc71ed | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 5 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 4 | 1 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/8315825726) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/8315825728) | f5c767 | | [theislab/ehrdata](https://github.com/theislab/ehrdata) | 4 | 3 | 0 | 1 | [![](https://github.com/theislab/ehrdata/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/8975578461) [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/8975578457) | ec6303 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/9051184940) | 9c59cd | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/9062485852) | 6a0baf | | [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | @@ -53,15 +53,15 @@ GitHub Dashboard | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1300 | 30 | 21 | 438 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1301 | 30 | 21 | 438 | | [theislab/scarches](https://github.com/theislab/scarches) | 310 | 14 | 39 | 49 | | [theislab/dca](https://github.com/theislab/dca) | 238 | 11 | 31 | 70 | | [theislab/paga](https://github.com/theislab/paga) | 187 | 10 | 22 | 32 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 174 | 6 | 107 | 23 | | [theislab/kBET](https://github.com/theislab/kBET) | 147 | 8 | 8 | 23 | -| [theislab/scCODA](https://github.com/theislab/scCODA) | 136 | 9 | 9 | 23 | +| [theislab/scCODA](https://github.com/theislab/scCODA) | 136 | 9 | 5 | 23 | | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 130 | 6 | 6 | 10 | -| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 103 | 6 | 0 | 10 | +| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 104 | 6 | 0 | 10 | | [theislab/chemCPA](https://github.com/theislab/chemCPA) | 88 | 5 | 9 | 22 | | [theislab/cpa](https://github.com/theislab/cpa) | 75 | 4 | 14 | 15 | | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 59 | 7 | 16 | 28 | @@ -78,7 +78,7 @@ GitHub Dashboard | [theislab/graph_abstraction](https://github.com/theislab/graph_abstraction) | 26 | 8 | 0 | 10 | | [theislab/scvelo_notebooks](https://github.com/theislab/scvelo_notebooks) | 26 | 2 | 2 | 13 | | [theislab/Covid_meta_analysis](https://github.com/theislab/Covid_meta_analysis) | 24 | 8 | 2 | 11 | -| [theislab/nicheformer](https://github.com/theislab/nicheformer) | 24 | 2 | 4 | 2 | +| [theislab/nicheformer](https://github.com/theislab/nicheformer) | 24 | 2 | 6 | 2 | | [theislab/interactive_plotting](https://github.com/theislab/interactive_plotting) | 21 | 4 | 11 | 7 | | [theislab/mubind](https://github.com/theislab/mubind) | 20 | 3 | 30 | 0 | | [theislab/scgen-reproducibility](https://github.com/theislab/scgen-reproducibility) | 17 | 4 | 5 | 8 | @@ -147,6 +147,7 @@ GitHub Dashboard | [theislab/ssl_in_scg](https://github.com/theislab/ssl_in_scg) | 3 | 1 | 0 | 1 | | [theislab/2020_iPS_Lung_Differentiation](https://github.com/theislab/2020_iPS_Lung_Differentiation) | 2 | 5 | 0 | 2 | | [theislab/2021_Aliluev_Tritschler_gut_HFD](https://github.com/theislab/2021_Aliluev_Tritschler_gut_HFD) | 2 | 4 | 0 | 1 | +| [theislab/atlas-feature-selection-benchmark](https://github.com/theislab/atlas-feature-selection-benchmark) | 2 | 2 | 1 | 0 | | [theislab/augurpy](https://github.com/theislab/augurpy) | 2 | 2 | 10 | 0 | | [theislab/bartseq-pipeline](https://github.com/theislab/bartseq-pipeline) | 2 | 4 | 0 | 3 | | [theislab/campa_ana](https://github.com/theislab/campa_ana) | 2 | 4 | 0 | 0 | @@ -166,7 +167,6 @@ GitHub Dashboard | [theislab/svaeligr](https://github.com/theislab/svaeligr) | 2 | 3 | 0 | 0 | | [theislab/2021_PRMT7_regulates_Monocyte_Extravasation](https://github.com/theislab/2021_PRMT7_regulates_Monocyte_Extravasation) | 1 | 4 | 0 | 2 | | [theislab/astrocytes_reprogramming_analysis](https://github.com/theislab/astrocytes_reprogramming_analysis) | 1 | 5 | 0 | 0 | -| [theislab/atlas-feature-selection-benchmark](https://github.com/theislab/atlas-feature-selection-benchmark) | 1 | 2 | 1 | 0 | | [theislab/autoencoderPS](https://github.com/theislab/autoencoderPS) | 1 | 3 | 0 | 2 | | [theislab/bartSeq](https://github.com/theislab/bartSeq) | 1 | 5 | 1 | 5 | | [theislab/bindome](https://github.com/theislab/bindome) | 1 | 3 | 5 | 1 | diff --git a/index.html b/index.html index 935715f..5584f5e 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

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+ + + + + + + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - - - - - - - diff --git a/repos.csv b/repos.csv index 601bf3d..f0e79f5 100644 --- a/repos.csv +++ b/repos.csv @@ -37,7 +37,7 @@ Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.gi theislab,archmap_admin,theislab/archmap_admin,0,2,0,0,FALSE,https://github.com/theislab/archmap_admin,0,NA,NA,NA theislab,archmap_doc,theislab/archmap_doc,0,3,0,0,FALSE,https://github.com/theislab/archmap_doc,0,NA,NA,NA theislab,astrocytes_reprogramming_analysis,theislab/astrocytes_reprogramming_analysis,1,5,0,0,FALSE,https://github.com/theislab/astrocytes_reprogramming_analysis,1,NA,NA,NA -theislab,atlas-feature-selection-benchmark,theislab/atlas-feature-selection-benchmark,1,2,1,0,FALSE,https://github.com/theislab/atlas-feature-selection-benchmark,1,NA,NA,NA +theislab,atlas-feature-selection-benchmark,theislab/atlas-feature-selection-benchmark,2,2,1,0,FALSE,https://github.com/theislab/atlas-feature-selection-benchmark,2,NA,NA,NA theislab,augurpy,theislab/augurpy,2,2,10,0,FALSE,https://github.com/theislab/augurpy,2,NA,NA,NA theislab,autoencoderPS,theislab/autoencoderPS,1,3,0,2,FALSE,https://github.com/theislab/autoencoderPS,1,NA,NA,NA theislab,bartSeq,theislab/bartSeq,1,5,1,5,FALSE,https://github.com/theislab/bartSeq,1,NA,NA,NA @@ -46,14 +46,14 @@ theislab,batchglm,theislab/batchglm,26,3,47,9,FALSE,https://github.com/theislab/ theislab,bindome,theislab/bindome,1,3,5,1,FALSE,https://github.com/theislab/bindome,1,NA,NA,NA theislab,campa,theislab/campa,13,4,5,4,FALSE,https://github.com/theislab/campa,13,NA,NA,NA theislab,campa_ana,theislab/campa_ana,2,4,0,0,FALSE,https://github.com/theislab/campa_ana,2,NA,NA,NA -theislab,cellrank,theislab/cellrank,305,8,18,38,FALSE,https://github.com/theislab/cellrank,305,08f1c901cc4ba1f6500f6fced4df8f5c076755e9,"Fix/importError #1183 (#1184) +theislab,cellrank,theislab/cellrank,305,8,17,38,FALSE,https://github.com/theislab/cellrank,305,08f1c901cc4ba1f6500f6fced4df8f5c076755e9,"Fix/importError #1183 (#1184) * fixed importError, issue #1183 * Removed 'renamed_arg' * linting",[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8601715542) -theislab,cellrank,theislab/cellrank,305,8,18,38,FALSE,https://github.com/theislab/cellrank,305,6074913214f087301dd49bd9ef581c20ec56e759,Fix failing test,[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8962180577) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8962240926) +theislab,cellrank,theislab/cellrank,305,8,17,38,FALSE,https://github.com/theislab/cellrank,305,6074913214f087301dd49bd9ef581c20ec56e759,Fix failing test,[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/9055262988) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/9055323922) theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,4,1,0,0,FALSE,https://github.com/theislab/cellrank2_reproducibility,4,f5c767a08bd0db4b58036afaffc91d0a649c90a5,"Add initial state identification (#59) * Add `embryoid_body/initial_state.ipynb` @@ -85,19 +85,25 @@ theislab,diffxpy,theislab/diffxpy,174,6,107,23,FALSE,https://github.com/theislab theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA theislab,disent,theislab/disent,6,3,0,0,FALSE,https://github.com/theislab/disent,6,NA,NA,NA theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA -theislab,ehrapy,theislab/ehrapy,118,5,32,15,FALSE,https://github.com/theislab/ehrapy,118,27d854b4ec26b032ddf611cd7b6cf21dd38de253,"Version 0.7.0 +theislab,ehrapy,theislab/ehrapy,119,5,33,15,FALSE,https://github.com/theislab/ehrapy,119,27d854b4ec26b032ddf611cd7b6cf21dd38de253,"Version 0.7.0 Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8390347476) -theislab,ehrapy,theislab/ehrapy,118,5,32,15,FALSE,https://github.com/theislab/ehrapy,118,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows +theislab,ehrapy,theislab/ehrapy,119,5,33,15,FALSE,https://github.com/theislab/ehrapy,119,2ea162551e3fc6c864885e8419f7443dc3b4b00e,"Improved support of encoded features in detect_bias (#725) -Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) -theislab,ehrapy,theislab/ehrapy,118,5,32,15,FALSE,https://github.com/theislab/ehrapy,118,c217583dd47bae10dc58ae6aa06345f30b44b9cb,"catplot (#721) - -* initial commit catplot +* Support encoded features + +* Include feature importances calculation + +* Removed unused list -* updates catplot +* PR Reviews -* add link to catplot",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/9014066099) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/9014066102) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/9014066094) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/9014066100) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/9014066105) +* Corrected results ordering + +* Docstring improvements",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/9061869585) +theislab,ehrapy,theislab/ehrapy,119,5,33,15,FALSE,https://github.com/theislab/ehrapy,119,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows + +Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) theislab,ehrapy-cli,theislab/ehrapy-cli,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-cli,1,NA,NA,NA theislab,ehrapy-datasets,theislab/ehrapy-datasets,5,2,0,2,FALSE,https://github.com/theislab/ehrapy-datasets,5,e441a5d0912396064360799f10de973b377ba6a5,"Merge pull request #23 from theislab/diabetes-update @@ -122,13 +128,13 @@ Automated template update from cookiecutter-scverse",[![](https://github.com/the theislab,geome,theislab/geome,15,3,0,4,FALSE,https://github.com/theislab/geome,15,991a31359e3d975a2cc02ec532c09d0f1a6e5811,"Merge pull request #47 from theislab/refactor Adding tests and interface improvements",[![](https://github.com/theislab/geome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/geome/actions/runs/8900509976) [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/8905593851) -theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,9c59cd2b65f09912c93f905a0ed44d9f799e8f1c,[status] 2024-05-11 12:15:05 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/9051184940) +theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,6a0baf379abcccfdc63eb38052a7bd53fe5a349c,[status] 2024-05-12 12:14:47 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/9062485852) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,graphcompass,theislab/graphcompass,15,2,0,0,FALSE,https://github.com/theislab/graphcompass,15,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,8,3,4,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA theislab,gut_lineage,theislab/gut_lineage,2,3,0,3,FALSE,https://github.com/theislab/gut_lineage,2,NA,NA,NA -theislab,hadge,theislab/hadge,23,3,12,5,FALSE,https://github.com/theislab/hadge,23,1ed105ed192e66898ff7a305a2c21f5b8c81bcf7,fix gdown bug,[![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) -theislab,hadge,theislab/hadge,23,3,12,5,FALSE,https://github.com/theislab/hadge,23,6441e66e4ee5ae70490a630da6a64fa2d4d8eea9,"Version 0.2.0 +theislab,hadge,theislab/hadge,23,3,13,5,FALSE,https://github.com/theislab/hadge,23,1ed105ed192e66898ff7a305a2c21f5b8c81bcf7,fix gdown bug,[![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) +theislab,hadge,theislab/hadge,23,3,13,5,FALSE,https://github.com/theislab/hadge,23,6441e66e4ee5ae70490a630da6a64fa2d4d8eea9,"Version 0.2.0 Signed-off-by: zethson ",[![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/8468875722) [![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/8468875726) theislab,hadge-reproducibility,theislab/hadge-reproducibility,0,2,0,0,FALSE,https://github.com/theislab/hadge-reproducibility,0,NA,NA,NA @@ -159,7 +165,7 @@ theislab,moscot_benchmarks,theislab/moscot_benchmarks,2,2,1,0,FALSE,https://gith theislab,moscot_not,theislab/moscot_not,3,2,8,1,FALSE,https://github.com/theislab/moscot_not,3,NA,NA,NA theislab,moscot_notebooks,theislab/moscot_notebooks,6,1,4,2,FALSE,https://github.com/theislab/moscot_notebooks,6,bc71edf71be1ef2fd8a52d44414ece68f98e12b4,"Merge pull request #69 from theislab/revert-68-add/callback_ex -Revert ""Passing callbacks example""",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/8962213087) +Revert ""Passing callbacks example""",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/9055295814) theislab,moslin,theislab/moslin,9,1,0,1,FALSE,https://github.com/theislab/moslin,9,NA,NA,NA theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,7,2,0,3,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,7,NA,NA,NA theislab,mubind,theislab/mubind,20,3,30,0,FALSE,https://github.com/theislab/mubind,20,NA,NA,NA @@ -176,7 +182,7 @@ theislab,ncem,theislab/ncem,98,6,26,13,FALSE,https://github.com/theislab/ncem,98 theislab,ncem_benchmarks,theislab/ncem_benchmarks,8,4,4,2,FALSE,https://github.com/theislab/ncem_benchmarks,8,NA,NA,NA theislab,ncem_tutorials,theislab/ncem_tutorials,10,4,5,0,FALSE,https://github.com/theislab/ncem_tutorials,10,NA,NA,NA theislab,neural_organoid_atlas,theislab/neural_organoid_atlas,9,4,2,1,FALSE,https://github.com/theislab/neural_organoid_atlas,9,NA,NA,NA -theislab,nicheformer,theislab/nicheformer,24,2,4,2,FALSE,https://github.com/theislab/nicheformer,24,NA,NA,NA +theislab,nicheformer,theislab/nicheformer,24,2,6,2,FALSE,https://github.com/theislab/nicheformer,24,NA,NA,NA theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimulation,0,3,0,1,FALSE,https://github.com/theislab/organoid_dexamethason_stimulation,0,NA,NA,NA theislab,paga,theislab/paga,187,10,22,32,FALSE,https://github.com/theislab/paga,187,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,7,0,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA @@ -209,7 +215,7 @@ theislab,sc-best-practices-ce,theislab/sc-best-practices-ce,8,8,2,3,FALSE,https: theislab,sc-pert,theislab/sc-pert,130,6,6,10,FALSE,https://github.com/theislab/sc-pert,130,NA,NA,NA theislab,scAnalysisTutorial,theislab/scAnalysisTutorial,10,3,0,3,FALSE,https://github.com/theislab/scAnalysisTutorial,10,NA,NA,NA theislab,scArches-reproducibility,theislab/scArches-reproducibility,31,5,5,0,FALSE,https://github.com/theislab/scArches-reproducibility,31,NA,NA,NA -theislab,scCODA,theislab/scCODA,136,9,9,23,FALSE,https://github.com/theislab/scCODA,136,NA,NA,NA +theislab,scCODA,theislab/scCODA,136,9,5,23,FALSE,https://github.com/theislab/scCODA,136,NA,NA,NA theislab,scCODA_reproducibility,theislab/scCODA_reproducibility,7,5,0,1,FALSE,https://github.com/theislab/scCODA_reproducibility,7,NA,NA,NA theislab,scPoli_legacy,theislab/scPoli_legacy,2,5,0,0,FALSE,https://github.com/theislab/scPoli_legacy,2,NA,NA,NA theislab,scPoli_reproduce,theislab/scPoli_reproduce,12,3,1,4,FALSE,https://github.com/theislab/scPoli_reproduce,12,NA,NA,NA @@ -276,7 +282,7 @@ theislab,scvelo,theislab/scvelo,392,12,57,101,FALSE,https://github.com/theislab/ Co-authored-by: Philipp Weiler ",[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8665253017) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8665253018) theislab,scvelo_notebooks,theislab/scvelo_notebooks,26,2,2,13,FALSE,https://github.com/theislab/scvelo_notebooks,26,NA,NA,NA -theislab,sfaira,theislab/sfaira,133,8,166,13,FALSE,https://github.com/theislab/sfaira,133,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9047321536) +theislab,sfaira,theislab/sfaira,133,8,166,13,FALSE,https://github.com/theislab/sfaira,133,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9055195222) theislab,sfaira,theislab/sfaira,133,8,166,13,FALSE,https://github.com/theislab/sfaira,133,5fcf932c44613e6bf4063ef3075ad6062bf5d9a1,round restored counts in some affected datasets,[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) theislab,sfaira,theislab/sfaira,133,8,166,13,FALSE,https://github.com/theislab/sfaira,133,ceb14c946f699c38d18a32192b76d4639caf845e,fix download links,[![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) theislab,sfaira-portal,theislab/sfaira-portal,0,4,2,0,FALSE,https://github.com/theislab/sfaira-portal,0,NA,NA,NA @@ -284,7 +290,7 @@ theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theis theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,3,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA -theislab,single-cell-best-practices,theislab/single-cell-best-practices,647,18,56,142,FALSE,https://github.com/theislab/single-cell-best-practices,647,b7335cda573f62813f404f77ad4bb4bbe85f439d,"Latest pertpy for conditions nb (#266) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,648,18,56,142,FALSE,https://github.com/theislab/single-cell-best-practices,648,b7335cda573f62813f404f77ad4bb4bbe85f439d,"Latest pertpy for conditions nb (#266) * Switch to lastest jupyterbook version @@ -297,7 +303,7 @@ Signed-off-by: zethson --------- Signed-off-by: zethson ",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064601) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064600) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064597) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064598) -theislab,single-cell-best-practices,theislab/single-cell-best-practices,647,18,56,142,FALSE,https://github.com/theislab/single-cell-best-practices,647,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,648,18,56,142,FALSE,https://github.com/theislab/single-cell-best-practices,648,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) * scATAC_pp @@ -411,15 +417,15 @@ Signed-off-by: zethson Co-authored-by: xlancelottx Co-authored-by: zethson Co-authored-by: Anna Schaar ",[![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) -theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,103,6,0,10,FALSE,https://github.com/theislab/single-cell-transformer-papers,103,NA,NA,NA -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1300,30,21,438,FALSE,https://github.com/theislab/single-cell-tutorial,1300,NA,NA,NA +theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,104,6,0,10,FALSE,https://github.com/theislab/single-cell-transformer-papers,104,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1301,30,21,438,FALSE,https://github.com/theislab/single-cell-tutorial,1301,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,3,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,3,NA,NA,NA theislab,spapros,theislab/spapros,21,3,8,5,FALSE,https://github.com/theislab/spapros,21,94507653801ec86e37b3d7e4184bf9866d65ca12,"Merge pull request #347 from theislab/dependabot/github_actions/development/codecov/codecov-action-4.3.1 [DEPENDABOT]: Bump codecov/codecov-action from 4.3.0 to 4.3.1",[![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/8975176142) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/8975176135) [![](https://github.com/theislab/spapros/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/spapros/actions/runs/8975176133) [![](https://github.com/theislab/spapros/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/spapros/actions/runs/8975176148) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/8975176149) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/8975176134) theislab,spapros,theislab/spapros,21,3,8,5,FALSE,https://github.com/theislab/spapros,21,e8a37c9e78039920a0792fc04f426ab062dbbf88,"Merge pull request #321 from theislab/patch_precommit -pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/9047860696) +pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/9055851283) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,NA,NA,NA theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA theislab,spapros_reproducibility,theislab/spapros_reproducibility,0,1,0,0,FALSE,https://github.com/theislab/spapros_reproducibility,0,NA,NA,NA
theislab/single-cell-best-practices647648 18 56 142
theislab/single-cell-best-practices647648 18 56 142 theislab/cellrank 305 81817 38 08f1c9 theislab/cellrank 305 81817 38 - + 607491
8 166 13 55bcbb
theislab/ehrapy118119 53233 15 27d854
theislab/ehrapy118119 53233 1584d33c2ea162
theislab/ehrapy118119 53233 15 - - - -c2175884d33c
theislab/anndata2ri theislab/hadge 23 31213 5 1ed105 theislab/hadge 23 31213 5 8 5 - e8a37c
1 4 2 bc71ed
2 0 09c59cd6a0baf
theislab/transcription_factor_activity
theislab/single-cell-tutorial13001301 30 21 438 theislab/scCODA 136 995 23
theislab/single-cell-transformer-papers103104 6 0 10 theislab/nicheformer 24 246 2
1
theislab/atlas-feature-selection-benchmark2210
theislab/augurpy 2 2 10 0
theislab/bartseq-pipeline 2 4 0 3
theislab/campa_ana 2 4 0 0
theislab/covid_macrophages_integration 2 5 0 4
theislab/epicardiods_analysis 2 2 1 0
theislab/flexible_priors 2 2 0 0
theislab/gut_lineage 2 3 0 3
theislab/HPA_reproducibility 2 3 0 1
theislab/HRCA-reproducibility 2 4 0 1
theislab/LineagePulse 2 5 0 0
theislab/LungInjuryRegeneration 2 8 0 0
theislab/moscot_benchmarks 2 2 1 0
theislab/multigrate_reproducibility 2 1 0 0
theislab/scanpy_squidpy_demo_2021 2 4 0 1
theislab/scPoli_legacy 2 5 0 0
theislab/spatial_atlas_ssl 2 2 0 0
theislab/svaeligr 2 3 0 0
theislab/2021_PRMT7_regulates_Monocyte_Extravasation 1 4 0 2
theislab/astrocytes_reprogramming_analysis 1 5 0 0
theislab/atlas-feature-selection-benchmark1210
theislab/autoencoderPS 1