diff --git a/README.md b/README.md index cf8a501..3e0452e 100644 --- a/README.md +++ b/README.md @@ -2,48 +2,48 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-01-08 12:10:22 UTC +2024-01-09 12:09:24 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 553 | 15 | 46 | 119 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718027) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718025) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718026) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718029) | 2e0a1f | -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 553 | 15 | 46 | 119 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 554 | 15 | 46 | 119 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718027) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718025) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718026) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718029) | 2e0a1f | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 554 | 15 | 46 | 119 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | | [theislab/scvelo](https://github.com/theislab/scvelo) | 371 | 13 | 53 | 100 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/7076514631) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/7076514630) [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/7076589652) | 809632 | | [theislab/cellrank](https://github.com/theislab/cellrank) | 281 | 7 | 10 | 35 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/7005093203) | c11a86 | | [theislab/cellrank](https://github.com/theislab/cellrank) | 281 | 7 | 10 | 35 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/7441629419) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/7441681902) | cabbd3 | -| [theislab/scib](https://github.com/theislab/scib) | 247 | 17 | 33 | 56 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) | ed3e28 | +| [theislab/scib](https://github.com/theislab/scib) | 248 | 17 | 33 | 56 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) | ed3e28 | | [theislab/scgen](https://github.com/theislab/scgen) | 235 | 9 | 20 | 51 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 132 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7441573460) | 55bcbb | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 132 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7454744858) | 55bcbb | | [theislab/sfaira](https://github.com/theislab/sfaira) | 132 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 132 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | | [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 112 | 6 | 18 | 22 | [![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/6848353013) | a36390 | -| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 104 | 6 | 15 | 15 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/7329671903) | 5f3ce0 | +| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 104 | 6 | 15 | 15 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/7458424406) | 96b5c8 | | [theislab/ncem](https://github.com/theislab/ncem) | 94 | 6 | 23 | 11 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | | [theislab/ncem](https://github.com/theislab/ncem) | 94 | 6 | 23 | 11 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 89 | 7 | 33 | 9 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7411357029) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7411357027) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7411357039) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7411357038) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7411357035) | 7b24a6 | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 89 | 7 | 33 | 9 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 89 | 7 | 33 | 9 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7452254841) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7452254844) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7452254836) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7452254842) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7452254848) | e7fe5b | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 89 | 7 | 33 | 9 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7260760638) | ea6b44 | -| [theislab/moscot](https://github.com/theislab/moscot) | 78 | 3 | 44 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/6456571831) | b23360 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 67 | 4 | 26 | 15 | [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) | \” title=“Revert”Deleted JaxscgenPlot”“\>404835 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 67 | 4 | 26 | 15 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7432873448) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7432873447) [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7432873443) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7432873442) | 5cc698 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 67 | 4 | 26 | 15 | [![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) | d00c5f | +| [theislab/moscot](https://github.com/theislab/moscot) | 78 | 3 | 42 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/6456571831) | b23360 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 67 | 4 | 27 | 15 | [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) | \” title=“Revert”Deleted JaxscgenPlot”“\>404835 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 67 | 4 | 27 | 15 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7452257322) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7452257316) [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7452257314) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7452257309) | 73ac94 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 67 | 4 | 27 | 15 | [![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) | d00c5f | | [theislab/destiny](https://github.com/theislab/destiny) | 66 | 5 | 30 | 11 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) | 300eb2 | | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 45 | 7 | 14 | 26 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825767) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825761) | 11ffbb | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | | [theislab/spapros](https://github.com/theislab/spapros) | 20 | 3 | 15 | 5 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/6854088652) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/6854088648) | 642fb3 | -| [theislab/spapros](https://github.com/theislab/spapros) | 20 | 3 | 15 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/7442104141) | c4c090 | -| [theislab/hadge](https://github.com/theislab/hadge) | 14 | 3 | 4 | 3 | [![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/7011486133) | 94067f | -| [theislab/hadge](https://github.com/theislab/hadge) | 14 | 3 | 4 | 3 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7010930207) | e3c949 | +| [theislab/spapros](https://github.com/theislab/spapros) | 20 | 3 | 15 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/7455412661) | c4c090 | +| [theislab/hadge](https://github.com/theislab/hadge) | 14 | 3 | 3 | 3 | [![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/7447931972) [![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/7447931976) | c4736a | +| [theislab/hadge](https://github.com/theislab/hadge) | 14 | 3 | 3 | 3 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7010930207) | e3c949 | | [theislab/geome](https://github.com/theislab/geome) | 13 | 3 | 4 | 4 | [![](https://github.com/theislab/geome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/geome/actions/runs/7048149542) [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/7048149538) | 0dda80 | | [theislab/geome](https://github.com/theislab/geome) | 13 | 3 | 4 | 4 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | +| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 2 | 5 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/7460570515) | bf6eef | | [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | | [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 6 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/7441656473) | bbca9f | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 4 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/4510904353) | cb7707 | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 3 | 1 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/7102882080) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/7102882073) | 9ab01c | -| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 2 | 3 | 3 | 1 | [![](https://github.com/theislab/ehrdata/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/7445223169) [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/7445223173) | 6db1e2 | | [theislab/bindome](https://github.com/theislab/bindome) | 1 | 3 | 5 | 1 | [![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) | 3cb12b | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/7447109876) | b1a699 | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/7460842635) | 5b34ae | | [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/6140914377) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/6140914379) | 1f47f4 | @@ -53,18 +53,18 @@ GitHub Dashboard | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1229 | 30 | 19 | 432 | -| [theislab/scarches](https://github.com/theislab/scarches) | 295 | 14 | 34 | 48 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1231 | 30 | 19 | 432 | +| [theislab/scarches](https://github.com/theislab/scarches) | 294 | 14 | 35 | 48 | | [theislab/dca](https://github.com/theislab/dca) | 227 | 11 | 31 | 67 | | [theislab/paga](https://github.com/theislab/paga) | 176 | 10 | 21 | 30 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 169 | 6 | 106 | 22 | | [theislab/kBET](https://github.com/theislab/kBET) | 138 | 9 | 8 | 23 | -| [theislab/scCODA](https://github.com/theislab/scCODA) | 124 | 9 | 12 | 21 | +| [theislab/scCODA](https://github.com/theislab/scCODA) | 124 | 9 | 12 | 22 | | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 117 | 6 | 6 | 10 | | [theislab/chemCPA](https://github.com/theislab/chemCPA) | 80 | 4 | 10 | 22 | -| [theislab/cpa](https://github.com/theislab/cpa) | 64 | 4 | 12 | 13 | +| [theislab/cpa](https://github.com/theislab/cpa) | 65 | 4 | 12 | 13 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 53 | 6 | 3 | 8 | -| [theislab/trVAE](https://github.com/theislab/trVAE) | 52 | 7 | 2 | 8 | +| [theislab/trVAE](https://github.com/theislab/trVAE) | 52 | 7 | 2 | 9 | | [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 46 | 6 | 3 | 12 | | [theislab/spatial_scog_workshop_2022](https://github.com/theislab/spatial_scog_workshop_2022) | 42 | 9 | 0 | 24 | | [theislab/pseudodynamics](https://github.com/theislab/pseudodynamics) | 40 | 7 | 0 | 6 | @@ -77,15 +77,14 @@ GitHub Dashboard | [theislab/Covid_meta_analysis](https://github.com/theislab/Covid_meta_analysis) | 24 | 8 | 2 | 11 | | [theislab/scvelo_notebooks](https://github.com/theislab/scvelo_notebooks) | 24 | 2 | 2 | 12 | | [theislab/interactive_plotting](https://github.com/theislab/interactive_plotting) | 20 | 4 | 10 | 7 | +| [theislab/scTab](https://github.com/theislab/scTab) | 20 | 2 | 2 | 3 | | [theislab/mubind](https://github.com/theislab/mubind) | 19 | 3 | 30 | 0 | -| [theislab/scTab](https://github.com/theislab/scTab) | 19 | 2 | 2 | 3 | | [theislab/scgen-reproducibility](https://github.com/theislab/scgen-reproducibility) | 18 | 4 | 5 | 8 | | [theislab/cellrank_reproducibility](https://github.com/theislab/cellrank_reproducibility) | 14 | 2 | 0 | 8 | | [theislab/campa](https://github.com/theislab/campa) | 13 | 4 | 4 | 4 | | [theislab/DeepCollisionalCrossSection](https://github.com/theislab/DeepCollisionalCrossSection) | 13 | 5 | 1 | 6 | | [theislab/multicpa](https://github.com/theislab/multicpa) | 12 | 2 | 1 | 2 | | [theislab/scanpy-in-R](https://github.com/theislab/scanpy-in-R) | 12 | 3 | 1 | 0 | -| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 4 | 5 | | [theislab/MetaMap](https://github.com/theislab/MetaMap) | 11 | 7 | 0 | 8 | | [theislab/multigrate](https://github.com/theislab/multigrate) | 11 | 3 | 6 | 3 | | [theislab/scPoli_reproduce](https://github.com/theislab/scPoli_reproduce) | 11 | 3 | 1 | 4 | @@ -146,6 +145,7 @@ GitHub Dashboard | [theislab/bartseq-pipeline](https://github.com/theislab/bartseq-pipeline) | 2 | 4 | 0 | 3 | | [theislab/campa_ana](https://github.com/theislab/campa_ana) | 2 | 4 | 0 | 0 | | [theislab/covid_macrophages_integration](https://github.com/theislab/covid_macrophages_integration) | 2 | 5 | 0 | 4 | +| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 2 | 3 | 3 | 1 | | [theislab/epicardiods_analysis](https://github.com/theislab/epicardiods_analysis) | 2 | 2 | 1 | 0 | | [theislab/flexible_priors](https://github.com/theislab/flexible_priors) | 2 | 2 | 0 | 0 | | [theislab/gut_lineage](https://github.com/theislab/gut_lineage) | 2 | 3 | 0 | 3 | @@ -171,6 +171,7 @@ GitHub Dashboard | [theislab/moscot_benchmarks](https://github.com/theislab/moscot_benchmarks) | 1 | 2 | 1 | 0 | | [theislab/pertpy-datasets](https://github.com/theislab/pertpy-datasets) | 1 | 3 | 0 | 1 | | [theislab/scPoli_legacy](https://github.com/theislab/scPoli_legacy) | 1 | 5 | 0 | 0 | +| [theislab/spatial_atlas_ssl](https://github.com/theislab/spatial_atlas_ssl) | 1 | 2 | 0 | 0 | | [theislab/tissue_reproducibility](https://github.com/theislab/tissue_reproducibility) | 1 | 3 | 0 | 0 | | [theislab/zebrafish_bipolarity](https://github.com/theislab/zebrafish_bipolarity) | 1 | 4 | 0 | 1 | | [theislab/2020_Inhibition_LTbetaR-signalling](https://github.com/theislab/2020_Inhibition_LTbetaR-signalling) | 0 | 4 | 0 | 3 | @@ -207,5 +208,4 @@ GitHub Dashboard | [theislab/sfaira_extension](https://github.com/theislab/sfaira_extension) | 0 | 3 | 1 | 0 | | [theislab/spapros-smk](https://github.com/theislab/spapros-smk) | 0 | 2 | 0 | 1 | | [theislab/spapros_reproducibility](https://github.com/theislab/spapros_reproducibility) | 0 | 1 | 1 | 0 | -| [theislab/spatial_atlas_ssl](https://github.com/theislab/spatial_atlas_ssl) | 0 | 2 | 0 | 0 | | [theislab/tissue](https://github.com/theislab/tissue) | 0 | 3 | 0 | 0 | diff --git a/index.html b/index.html index 4fac8fd..6ce1894 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

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- - - - - - - - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + + + + + + + + @@ -1325,264 +1325,264 @@

Repos without Github Actions

+ + + + + + + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - - - - - - - diff --git a/repos.csv b/repos.csv index 97acfbc..43b3c4b 100644 --- a/repos.csv +++ b/repos.csv @@ -27,9 +27,9 @@ theislab,MRGR_stress_analysis,theislab/MRGR_stress_analysis,0,3,0,0,FALSE,https: theislab,MetaMap,theislab/MetaMap,11,7,0,8,FALSE,https://github.com/theislab/MetaMap,11,NA,NA,NA theislab,MetaMap-web,theislab/MetaMap-web,0,4,2,0,FALSE,https://github.com/theislab/MetaMap-web,0,NA,NA,NA theislab,PathReg,theislab/PathReg,8,3,0,0,FALSE,https://github.com/theislab/PathReg,8,NA,NA,NA -theislab,anndata2ri,theislab/anndata2ri,104,6,15,15,FALSE,https://github.com/theislab/anndata2ri,104,5f3ce0afce32d3ba52cfae09d78d2bc6bad20d00,"[pre-commit.ci] pre-commit autoupdate (#152) +theislab,anndata2ri,theislab/anndata2ri,104,6,15,15,FALSE,https://github.com/theislab/anndata2ri,104,96b5c83f5b8de90073179a9f0b4f8736d52b2009,"[pre-commit.ci] pre-commit autoupdate (#153) -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/7329671903) +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/7458424406) theislab,archmap_admin,theislab/archmap_admin,0,3,0,0,FALSE,https://github.com/theislab/archmap_admin,0,NA,NA,NA theislab,archmap_doc,theislab/archmap_doc,0,3,0,0,FALSE,https://github.com/theislab/archmap_doc,0,NA,NA,NA theislab,astrocytes_reprogramming_analysis,theislab/astrocytes_reprogramming_analysis,1,5,0,0,FALSE,https://github.com/theislab/astrocytes_reprogramming_analysis,1,NA,NA,NA @@ -82,7 +82,7 @@ theislab,consensus-clustering-evaluation,theislab/consensus-clustering-evaluatio theislab,countae,theislab/countae,1,4,0,0,FALSE,https://github.com/theislab/countae,1,NA,NA,NA theislab,covid-perturbation,theislab/covid-perturbation,3,3,0,0,FALSE,https://github.com/theislab/covid-perturbation,3,NA,NA,NA theislab,covid_macrophages_integration,theislab/covid_macrophages_integration,2,5,0,4,FALSE,https://github.com/theislab/covid_macrophages_integration,2,NA,NA,NA -theislab,cpa,theislab/cpa,64,4,12,13,FALSE,https://github.com/theislab/cpa,64,NA,NA,NA +theislab,cpa,theislab/cpa,65,4,12,13,FALSE,https://github.com/theislab/cpa,65,NA,NA,NA theislab,cpa-reproducibility,theislab/cpa-reproducibility,7,3,0,1,FALSE,https://github.com/theislab/cpa-reproducibility,7,NA,NA,NA theislab,cross_system_integration,theislab/cross_system_integration,9,2,10,0,FALSE,https://github.com/theislab/cross_system_integration,9,NA,NA,NA theislab,dali,theislab/dali,0,7,0,1,FALSE,https://github.com/theislab/dali,0,NA,NA,NA @@ -93,17 +93,15 @@ theislab,diffxpy,theislab/diffxpy,169,6,106,22,FALSE,https://github.com/theislab theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA theislab,disent,theislab/disent,5,3,0,0,FALSE,https://github.com/theislab/disent,5,NA,NA,NA theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA -theislab,ehrapy,theislab/ehrapy,89,7,33,9,FALSE,https://github.com/theislab/ehrapy,89,7b24a6ab26d306927dd19267d789135ad105a77a,"[pre-commit.ci] pre-commit autoupdate (#634) - -updates: -- [github.com/pre-commit/mirrors-prettier: v4.0.0-alpha.7 → v4.0.0-alpha.8](https://github.com/pre-commit/mirrors-prettier/compare/v4.0.0-alpha.7...v4.0.0-alpha.8) -- [github.com/astral-sh/ruff-pre-commit: v0.1.8 → v0.1.9](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.8...v0.1.9) -- [github.com/pre-commit/mirrors-mypy: v1.7.1 → v1.8.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.7.1...v1.8.0) - -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7411357029) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7411357027) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7411357039) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7411357038) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7411357035) theislab,ehrapy,theislab/ehrapy,89,7,33,9,FALSE,https://github.com/theislab/ehrapy,89,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) +theislab,ehrapy,theislab/ehrapy,89,7,33,9,FALSE,https://github.com/theislab/ehrapy,89,e7fe5b7362566f4a2fee8fd47cbd77cdf228aa13,"[pre-commit.ci] pre-commit autoupdate (#636) + +updates: +- [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.9...v0.1.11) + +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7452254841) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7452254844) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7452254836) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7452254842) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7452254848) theislab,ehrapy,theislab/ehrapy,89,7,33,9,FALSE,https://github.com/theislab/ehrapy,89,ea6b4430d58d4ff8660eb15bd5db4d248f1c74ea,"Submodule Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/7260760638) @@ -112,7 +110,7 @@ theislab,ehrapy-datasets,theislab/ehrapy-datasets,4,2,0,2,FALSE,https://github.c theislab,ehrapy-reproducibility,theislab/ehrapy-reproducibility,0,2,0,0,FALSE,https://github.com/theislab/ehrapy-reproducibility,0,NA,NA,NA theislab,ehrapy-site,theislab/ehrapy-site,1,2,0,0,FALSE,https://github.com/theislab/ehrapy-site,1,NA,NA,NA theislab,ehrapy-tutorials,theislab/ehrapy-tutorials,5,3,1,2,FALSE,https://github.com/theislab/ehrapy-tutorials,5,NA,NA,NA -theislab,ehrdata,theislab/ehrdata,2,3,3,1,FALSE,https://github.com/theislab/ehrdata,2,6db1e276006517e0e4ec104d0b14820466059efc,support feature extraction from more OMOP CDM,[![](https://github.com/theislab/ehrdata/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/7445223169) [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/7445223173) +theislab,ehrdata,theislab/ehrdata,2,3,3,1,FALSE,https://github.com/theislab/ehrdata,2,NA,NA,NA theislab,enrichment_analysis_celltype,theislab/enrichment_analysis_celltype,9,5,0,4,FALSE,https://github.com/theislab/enrichment_analysis_celltype,9,NA,NA,NA theislab,epicardiods_analysis,theislab/epicardiods_analysis,2,2,1,0,FALSE,https://github.com/theislab/epicardiods_analysis,2,NA,NA,NA theislab,expiMap_reproducibility,theislab/expiMap_reproducibility,8,5,3,4,FALSE,https://github.com/theislab/expiMap_reproducibility,8,NA,NA,NA @@ -127,14 +125,14 @@ API Update, Transform and ToIterable classes.",[![](https://github.com/theislab/ theislab,geome,theislab/geome,13,3,4,4,FALSE,https://github.com/theislab/geome,13,5bf0cd07b2ea7fa224a37f69232542a9e686c5bf,"Merge pull request #31 from theislab/template-update Automated template update from cookiecutter-scverse",[![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) -theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,b1a699a51115b977752cb13c7d34f3e2a00db616,[status] 2024-01-07 12:13:02 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/7447109876) +theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,5b34aee3ba02ea5e80c4000db7a8d1a1da2b1d7e,[status] 2024-01-08 12:13:03 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/7460842635) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,greatpy,theislab/greatpy,8,3,4,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA theislab,gut_lineage,theislab/gut_lineage,2,3,0,3,FALSE,https://github.com/theislab/gut_lineage,2,NA,NA,NA -theislab,hadge,theislab/hadge,14,3,4,3,FALSE,https://github.com/theislab/hadge,14,94067fd5308d10fad8733f135360935bd8614f00,"Merge pull request #32 from theislab/docs +theislab,hadge,theislab/hadge,14,3,3,3,FALSE,https://github.com/theislab/hadge,14,c4736afb4870773ee2a6d3d4156cdbb0ef15cd0d,"Merge pull request #27 from mari-ga/main -Fix bug when no hto or rna matrix is provided for summary",[![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/7011486133) -theislab,hadge,theislab/hadge,14,3,4,3,FALSE,https://github.com/theislab/hadge,14,e3c949c8518bd9127e3e285da783ff02aadf86e4,remove name of grouplist,[![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7010930207) +Correction for old merge",[![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/7447931972) [![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/7447931976) +theislab,hadge,theislab/hadge,14,3,3,3,FALSE,https://github.com/theislab/hadge,14,e3c949c8518bd9127e3e285da783ff02aadf86e4,remove name of grouplist,[![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7010930207) theislab,hadge-reproducibility,theislab/hadge-reproducibility,0,2,0,0,FALSE,https://github.com/theislab/hadge-reproducibility,0,NA,NA,NA theislab,icml_cbw_2022_clcvae,theislab/icml_cbw_2022_clcvae,0,3,0,0,FALSE,https://github.com/theislab/icml_cbw_2022_clcvae,0,NA,NA,NA theislab,idtrack,theislab/idtrack,0,1,6,0,FALSE,https://github.com/theislab/idtrack,0,12aa73e176bef9d1f91e9dc8c68010a1ac430c18,"Merge pull request #55 from theislab/development @@ -167,7 +165,7 @@ theislab,intercode,theislab/intercode,6,3,1,1,FALSE,https://github.com/theislab/ theislab,ipsc_ipd_analysis,theislab/ipsc_ipd_analysis,0,3,0,0,FALSE,https://github.com/theislab/ipsc_ipd_analysis,0,NA,NA,NA theislab,kBET,theislab/kBET,138,9,8,23,FALSE,https://github.com/theislab/kBET,138,NA,NA,NA theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/kbranches,5,NA,NA,NA -theislab,moscot,theislab/moscot,78,3,44,6,FALSE,https://github.com/theislab/moscot,78,b233601b6aecd7259aaa1a5dba107f2963420614,"Update/lrgw2 (#613) +theislab,moscot,theislab/moscot,78,3,42,6,FALSE,https://github.com/theislab/moscot,78,b233601b6aecd7259aaa1a5dba107f2963420614,"Update/lrgw2 (#613) @@ -199,13 +197,16 @@ theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimul theislab,paga,theislab/paga,176,10,21,30,FALSE,https://github.com/theislab/paga,176,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,7,0,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,4,3,0,5,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,4,NA,NA,NA -theislab,pertpy,theislab/pertpy,67,4,26,15,FALSE,https://github.com/theislab/pertpy,67,404835c82f9a3d943b85973c10130303d090839d,"Revert ""Deleted JaxscgenPlot"" +theislab,pertpy,theislab/pertpy,67,4,27,15,FALSE,https://github.com/theislab/pertpy,67,404835c82f9a3d943b85973c10130303d090839d,"Revert ""Deleted JaxscgenPlot"" This reverts commit 161fc137c5a23320a5799a22cd4d7212b550bca9.",[![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) -theislab,pertpy,theislab/pertpy,67,4,26,15,FALSE,https://github.com/theislab/pertpy,67,5cc6984102f3075a2c2d4d187e1e2d434bab0e52,"Add de_res_to_anndata +theislab,pertpy,theislab/pertpy,67,4,27,15,FALSE,https://github.com/theislab/pertpy,67,73ac94eb749887f1ac5fddc174bfe5c80c253497,"[pre-commit.ci] pre-commit autoupdate (#494) -Signed-off-by: zethson ",[![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7432873448) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7432873447) [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7432873443) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7432873442) -theislab,pertpy,theislab/pertpy,67,4,26,15,FALSE,https://github.com/theislab/pertpy,67,d00c5f9e7243d6b1984becf973509f5f8ae425fc,pre-commit,[![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) +updates: +- [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.9...v0.1.11) + +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7452257322) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7452257316) [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7452257314) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7452257309) +theislab,pertpy,theislab/pertpy,67,4,27,15,FALSE,https://github.com/theislab/pertpy,67,d00c5f9e7243d6b1984becf973509f5f8ae425fc,pre-commit,[![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6737423407) theislab,pertpy-datasets,theislab/pertpy-datasets,1,3,0,1,FALSE,https://github.com/theislab/pertpy-datasets,1,NA,NA,NA theislab,pertpy-tutorials,theislab/pertpy-tutorials,4,4,1,6,FALSE,https://github.com/theislab/pertpy-tutorials,4,NA,NA,NA theislab,perturbation-metrics,theislab/perturbation-metrics,4,2,1,0,FALSE,https://github.com/theislab/perturbation-metrics,4,NA,NA,NA @@ -216,11 +217,11 @@ theislab,sc-best-practices-ce,theislab/sc-best-practices-ce,8,8,2,3,FALSE,https: theislab,sc-pert,theislab/sc-pert,117,6,6,10,FALSE,https://github.com/theislab/sc-pert,117,NA,NA,NA theislab,scAnalysisTutorial,theislab/scAnalysisTutorial,10,3,0,3,FALSE,https://github.com/theislab/scAnalysisTutorial,10,NA,NA,NA theislab,scArches-reproducibility,theislab/scArches-reproducibility,30,5,5,1,FALSE,https://github.com/theislab/scArches-reproducibility,30,NA,NA,NA -theislab,scCODA,theislab/scCODA,124,9,12,21,FALSE,https://github.com/theislab/scCODA,124,NA,NA,NA +theislab,scCODA,theislab/scCODA,124,9,12,22,FALSE,https://github.com/theislab/scCODA,124,NA,NA,NA theislab,scCODA_reproducibility,theislab/scCODA_reproducibility,7,5,0,1,FALSE,https://github.com/theislab/scCODA_reproducibility,7,NA,NA,NA theislab,scPoli_legacy,theislab/scPoli_legacy,1,5,0,0,FALSE,https://github.com/theislab/scPoli_legacy,1,NA,NA,NA theislab,scPoli_reproduce,theislab/scPoli_reproduce,11,3,1,4,FALSE,https://github.com/theislab/scPoli_reproduce,11,NA,NA,NA -theislab,scTab,theislab/scTab,19,2,2,3,FALSE,https://github.com/theislab/scTab,19,NA,NA,NA +theislab,scTab,theislab/scTab,20,2,2,3,FALSE,https://github.com/theislab/scTab,20,NA,NA,NA theislab,sc_analysis_template,theislab/sc_analysis_template,3,3,0,0,FALSE,https://github.com/theislab/sc_analysis_template,3,NA,NA,NA theislab,sc_ketamine_analysis,theislab/sc_ketamine_analysis,0,4,0,0,FALSE,https://github.com/theislab/sc_ketamine_analysis,0,NA,NA,NA theislab,scachepy,theislab/scachepy,7,5,3,1,FALSE,https://github.com/theislab/scachepy,7,NA,NA,NA @@ -229,20 +230,20 @@ theislab,scanpy-in-R,theislab/scanpy-in-R,12,3,1,0,FALSE,https://github.com/thei theislab,scanpy.org,theislab/scanpy.org,0,7,1,0,FALSE,https://github.com/theislab/scanpy.org,0,NA,NA,NA theislab,scanpy_neighbors,theislab/scanpy_neighbors,0,3,0,1,FALSE,https://github.com/theislab/scanpy_neighbors,0,NA,NA,NA theislab,scanpy_squidpy_demo_2021,theislab/scanpy_squidpy_demo_2021,2,4,0,0,FALSE,https://github.com/theislab/scanpy_squidpy_demo_2021,2,NA,NA,NA -theislab,scanpydoc,theislab/scanpydoc,12,6,4,5,FALSE,https://github.com/theislab/scanpydoc,12,NA,NA,NA -theislab,scarches,theislab/scarches,295,14,34,48,FALSE,https://github.com/theislab/scarches,295,NA,NA,NA +theislab,scanpydoc,theislab/scanpydoc,12,6,2,5,FALSE,https://github.com/theislab/scanpydoc,12,bf6eef2ff7b4fb17a3bedb080ae328c2d74dd803,Add test for wrapper (#119),[![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/7460570515) +theislab,scarches,theislab/scarches,294,14,35,48,FALSE,https://github.com/theislab/scarches,294,NA,NA,NA theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,6,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,6,NA,NA,NA theislab,scgen,theislab/scgen,235,9,20,51,FALSE,https://github.com/theislab/scgen,235,d79e1f04233c30f9a4eb5b8d57718127909807d7,Merge pull request #87 from theislab/batch_corr_labels,[![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) theislab,scgen-reproducibility,theislab/scgen-reproducibility,18,4,5,8,FALSE,https://github.com/theislab/scgen-reproducibility,18,NA,NA,NA -theislab,scib,theislab/scib,247,17,33,56,FALSE,https://github.com/theislab/scib,NA,ed3e2846414ca1e3dc07552c0eef1e68d82230d4,Bump version: 1.1.3 → 1.1.4,[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) +theislab,scib,theislab/scib,248,17,33,56,FALSE,https://github.com/theislab/scib,NA,ed3e2846414ca1e3dc07552c0eef1e68d82230d4,Bump version: 1.1.3 → 1.1.4,[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) theislab,scib-pipeline,theislab/scib-pipeline,45,7,14,26,FALSE,https://github.com/theislab/scib-pipeline,45,1180bcb35829d6d2984202268b4d1d11c511e20c,Merge branch 'fix/igraph_dependency' into rpy2_unpin,[![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) theislab,scib-reproducibility,theislab/scib-reproducibility,46,6,3,12,FALSE,https://github.com/theislab/scib-reproducibility,46,NA,NA,NA theislab,scvelo,theislab/scvelo,371,13,53,100,FALSE,https://github.com/theislab/scvelo,371,809632e03acc958a5f13d9321981af9c1cd95460,"Update `pyproject.toml` (#1166) Update version number.",[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/7076514631) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/7076514630) [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/7076589652) theislab,scvelo_notebooks,theislab/scvelo_notebooks,24,2,2,12,FALSE,https://github.com/theislab/scvelo_notebooks,24,NA,NA,NA -theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7441573460) +theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7454744858) theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,5fcf932c44613e6bf4063ef3075ad6062bf5d9a1,round restored counts in some affected datasets,[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,ceb14c946f699c38d18a32192b76d4639caf845e,fix download links,[![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) theislab,sfaira-portal,theislab/sfaira-portal,0,4,2,0,FALSE,https://github.com/theislab/sfaira-portal,0,NA,NA,NA @@ -250,10 +251,10 @@ theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theis theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,3,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA -theislab,single-cell-best-practices,theislab/single-cell-best-practices,553,15,46,119,FALSE,https://github.com/theislab/single-cell-best-practices,553,2e0a1f475d614c86bdc91c8544870e702f67c38e,"Update differential_gene_expression.ipynb (#256) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,554,15,46,119,FALSE,https://github.com/theislab/single-cell-best-practices,554,2e0a1f475d614c86bdc91c8544870e702f67c38e,"Update differential_gene_expression.ipynb (#256) Corrected typographical and grammatical errors.",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718027) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718025) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718026) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/7338718029) -theislab,single-cell-best-practices,theislab/single-cell-best-practices,553,15,46,119,FALSE,https://github.com/theislab/single-cell-best-practices,553,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,554,15,46,119,FALSE,https://github.com/theislab/single-cell-best-practices,554,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) * scATAC_pp @@ -368,7 +369,7 @@ Co-authored-by: xlancelottx Co-authored-by: zethson Co-authored-by: Anna Schaar ",[![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,25,2,0,2,FALSE,https://github.com/theislab/single-cell-transformer-papers,25,NA,NA,NA -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1229,30,19,432,FALSE,https://github.com/theislab/single-cell-tutorial,1229,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1231,30,19,432,FALSE,https://github.com/theislab/single-cell-tutorial,1231,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,3,4,4,3,FALSE,https://github.com/theislab/singlecell_proteomics,3,NA,NA,NA theislab,spapros,theislab/spapros,20,3,15,5,FALSE,https://github.com/theislab/spapros,20,642fb34d2ccbb1bb8730b239840bf1bfe06701f8,"[DEPENDABOT]: Bump importlib-resources from 5.12.0 to 6.1.1 in /docs @@ -387,11 +388,11 @@ updated-dependencies: Signed-off-by: dependabot[bot] ",[![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/6854088652) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/6854088648) theislab,spapros,theislab/spapros,20,3,15,5,FALSE,https://github.com/theislab/spapros,20,c4c0903758ecb1acd0e16c1d227e59e8be1e28de,"Merge pull request #288 from theislab/development -Mention python package in docs",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/7442104141) +Mention python package in docs",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/7455412661) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,NA,NA,NA theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA theislab,spapros_reproducibility,theislab/spapros_reproducibility,0,1,1,0,FALSE,https://github.com/theislab/spapros_reproducibility,0,NA,NA,NA -theislab,spatial_atlas_ssl,theislab/spatial_atlas_ssl,0,2,0,0,FALSE,https://github.com/theislab/spatial_atlas_ssl,0,NA,NA,NA +theislab,spatial_atlas_ssl,theislab/spatial_atlas_ssl,1,2,0,0,FALSE,https://github.com/theislab/spatial_atlas_ssl,1,NA,NA,NA theislab,spatial_scog_workshop_2022,theislab/spatial_scog_workshop_2022,42,9,0,24,FALSE,https://github.com/theislab/spatial_scog_workshop_2022,42,NA,NA,NA theislab,squidpy_reproducibility,theislab/squidpy_reproducibility,8,2,0,5,FALSE,https://github.com/theislab/squidpy_reproducibility,8,NA,NA,NA theislab,superexacttestpy,theislab/superexacttestpy,9,2,3,0,FALSE,https://github.com/theislab/superexacttestpy,9,NA,NA,NA @@ -401,7 +402,7 @@ theislab,theislab.github.io,theislab/theislab.github.io,7,2,9,0,FALSE,https://gi theislab,tissue,theislab/tissue,0,3,0,0,FALSE,https://github.com/theislab/tissue,0,NA,NA,NA theislab,tissue_reproducibility,theislab/tissue_reproducibility,1,3,0,0,FALSE,https://github.com/theislab/tissue_reproducibility,1,NA,NA,NA theislab,tissue_tensorflow,theislab/tissue_tensorflow,8,3,0,0,FALSE,https://github.com/theislab/tissue_tensorflow,8,NA,NA,NA -theislab,trVAE,theislab/trVAE,52,7,2,8,FALSE,https://github.com/theislab/trVAE,52,NA,NA,NA +theislab,trVAE,theislab/trVAE,52,7,2,9,FALSE,https://github.com/theislab/trVAE,52,NA,NA,NA theislab,trVAE_reproducibility,theislab/trVAE_reproducibility,6,3,2,4,FALSE,https://github.com/theislab/trVAE_reproducibility,6,NA,NA,NA theislab,transcription_factor_activity,theislab/transcription_factor_activity,1,1,5,1,FALSE,https://github.com/theislab/transcription_factor_activity,1,ced39f7274e8fb4cc5da8f29dd197a8061227d7e,Delete sync.yaml for noe,[![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) theislab,trvaep,theislab/trvaep,9,3,0,4,FALSE,https://github.com/theislab/trvaep,9,NA,NA,NA
theislab/single-cell-best-practices553554 15 46 119
theislab/single-cell-best-practices553554 15 46 119
theislab/scib247248 17 33 56 8 166 13 55bcbb
6 15 155f3ce096b5c8
theislab/ncem 7 33 9 - - - -7b24a684d33c
theislab/ehrapy 7 33 984d33c + + + +e7fe5b
theislab/ehrapy theislab/moscot 78 34442 6 b23360 theislab/pertpy 67 42627 15 <a href=“https://github.com/theislab/pertpy/commit/404835c82f9a3d943b85973c10130303d090839d” @@ -262,19 +262,19 @@

GitHub Dashboard

theislab/pertpy 67 42627 15 - - -5cc698 + + +73ac94
theislab/pertpy 67 42627 15 d00c5f 15 5 - c4c090
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theislab/scanpydoc12625bf6eef
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theislab/ehrdata2331 -6db1e2
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124 9 122122
theislab/sc-pert
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theislab/scTabtheislab/mubind 1922 3300
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