diff --git a/README.md b/README.md index d9c5797..e1e4f63 100644 --- a/README.md +++ b/README.md @@ -2,39 +2,39 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-08-20 12:11:05 UTC +2024-08-21 12:11:32 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 720 | 18 | 65 | 166 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535081) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535098) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535076) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535080) | 6461a5 | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 722 | 18 | 65 | 167 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535081) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535098) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535076) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535080) | 6461a5 | | [theislab/scvelo](https://github.com/theislab/scvelo) | 405 | 13 | 61 | 102 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/9892975902) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/9892975897) | 3fbce6 | | [theislab/scvelo](https://github.com/theislab/scvelo) | 405 | 13 | 61 | 102 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | | [theislab/cellrank](https://github.com/theislab/cellrank) | 337 | 9 | 17 | 45 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10239706729) | 43c32b | | [theislab/cellrank](https://github.com/theislab/cellrank) | 337 | 9 | 17 | 45 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10444910013) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10444984951) | 86640c | | [theislab/scib](https://github.com/theislab/scib) | 286 | 14 | 37 | 62 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/10287985783) | 5547cd | | [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 145 | 5 | 25 | 27 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/9611012269) | 328e7e | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 136 | 5 | 41 | 18 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 136 | 5 | 41 | 18 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) | e0e081 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 136 | 5 | 41 | 18 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10466124035) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10466124029) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10466124032) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10466124028) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10466124051) | fd600a | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 136 | 5 | 40 | 18 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724893) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724911) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724909) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724900) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724894) | 4e4888 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 136 | 5 | 40 | 18 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 136 | 5 | 40 | 18 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) | e0e081 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 134 | 8 | 167 | 12 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9457340256) | 55bcbb | | [theislab/sfaira](https://github.com/theislab/sfaira) | 134 | 8 | 167 | 12 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 134 | 8 | 167 | 12 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | -| [theislab/moscot](https://github.com/theislab/moscot) | 105 | 3 | 51 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/10212768708) | 36d93b | +| [theislab/moscot](https://github.com/theislab/moscot) | 106 | 3 | 51 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/10212768708) | 36d93b | | [theislab/ncem](https://github.com/theislab/ncem) | 102 | 6 | 27 | 13 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | | [theislab/ncem](https://github.com/theislab/ncem) | 102 | 6 | 27 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | | [theislab/destiny](https://github.com/theislab/destiny) | 71 | 5 | 32 | 12 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) | 300eb2 | -| [theislab/graphcompass](https://github.com/theislab/graphcompass) | 26 | 2 | 1 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | +| [theislab/graphcompass](https://github.com/theislab/graphcompass) | 26 | 2 | 2 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | | [theislab/hadge](https://github.com/theislab/hadge) | 24 | 3 | 13 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | | [theislab/hadge](https://github.com/theislab/hadge) | 24 | 3 | 13 | 6 | [![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/9366149796) [![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/9366149805) | 490a55 | | [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/10459161813) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/10459161788) | a78677 | -| [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/10463702003) | e8a37c | +| [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/10481915986) | e8a37c | | [theislab/mubind](https://github.com/theislab/mubind) | 22 | 3 | 30 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10432291601) | cc7e67 | | [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10399050996) | 402a0a | | [theislab/multimil](https://github.com/theislab/multimil) | 14 | 5 | 3 | 1 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/10163998577) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/10399053136) | 2bb4f9 | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 6 | 1 | 0 | 1 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/9877064958) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/9877064964) | 9f82e8 | | [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 5 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/10471125931) | 0d4e4e | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/10489442332) | a9bf9a | | [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | @@ -43,25 +43,25 @@ GitHub Dashboard | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1341 | 30 | 21 | 449 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1343 | 30 | 21 | 449 | | [theislab/scarches](https://github.com/theislab/scarches) | 326 | 13 | 44 | 51 | | [theislab/scgen](https://github.com/theislab/scgen) | 258 | 9 | 24 | 53 | | [theislab/dca](https://github.com/theislab/dca) | 241 | 11 | 31 | 71 | -| [theislab/paga](https://github.com/theislab/paga) | 197 | 10 | 23 | 33 | +| [theislab/paga](https://github.com/theislab/paga) | 198 | 10 | 23 | 33 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 186 | 6 | 108 | 23 | -| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 171 | 8 | 0 | 18 | +| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 172 | 8 | 0 | 18 | | [theislab/kBET](https://github.com/theislab/kBET) | 150 | 8 | 9 | 23 | | [theislab/scCODA](https://github.com/theislab/scCODA) | 146 | 9 | 7 | 22 | | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 140 | 5 | 6 | 10 | | [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 123 | 7 | 16 | 16 | | [theislab/chemCPA](https://github.com/theislab/chemCPA) | 97 | 5 | 10 | 23 | -| [theislab/cpa](https://github.com/theislab/cpa) | 80 | 5 | 19 | 18 | +| [theislab/cpa](https://github.com/theislab/cpa) | 80 | 5 | 18 | 18 | | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 64 | 7 | 17 | 28 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 53 | 6 | 6 | 8 | | [theislab/trVAE](https://github.com/theislab/trVAE) | 53 | 6 | 3 | 11 | | [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 52 | 6 | 3 | 14 | | [theislab/spatial_scog_workshop_2022](https://github.com/theislab/spatial_scog_workshop_2022) | 48 | 9 | 0 | 27 | -| [theislab/nicheformer](https://github.com/theislab/nicheformer) | 41 | 3 | 10 | 2 | +| [theislab/nicheformer](https://github.com/theislab/nicheformer) | 42 | 3 | 10 | 2 | | [theislab/pseudodynamics](https://github.com/theislab/pseudodynamics) | 39 | 7 | 0 | 6 | | [theislab/scTab](https://github.com/theislab/scTab) | 38 | 3 | 1 | 7 | | [theislab/tcellmatch](https://github.com/theislab/tcellmatch) | 37 | 9 | 3 | 7 | @@ -81,7 +81,7 @@ GitHub Dashboard | [theislab/scanpy-in-R](https://github.com/theislab/scanpy-in-R) | 13 | 3 | 1 | 0 | | [theislab/scPoli_reproduce](https://github.com/theislab/scPoli_reproduce) | 13 | 3 | 2 | 4 | | [theislab/MetaMap](https://github.com/theislab/MetaMap) | 12 | 7 | 0 | 8 | -| [theislab/multigrate](https://github.com/theislab/multigrate) | 12 | 3 | 7 | 4 | +| [theislab/multigrate](https://github.com/theislab/multigrate) | 12 | 3 | 7 | 5 | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 4 | 6 | | [theislab/GWAS-scRNAseq-Integration](https://github.com/theislab/GWAS-scRNAseq-Integration) | 11 | 5 | 0 | 12 | | [theislab/ncem_tutorials](https://github.com/theislab/ncem_tutorials) | 11 | 4 | 6 | 0 | diff --git a/index.html b/index.html index 9b1162e..37a30ed 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

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Repos without Github Actions

- + diff --git a/repos.csv b/repos.csv index 65cc8df..9374de2 100644 --- a/repos.csv +++ b/repos.csv @@ -57,7 +57,7 @@ theislab,consensus-clustering-evaluation,theislab/consensus-clustering-evaluatio theislab,countae,theislab/countae,1,4,0,0,FALSE,https://github.com/theislab/countae,1,NA,NA,NA theislab,covid-perturbation,theislab/covid-perturbation,4,3,0,0,FALSE,https://github.com/theislab/covid-perturbation,4,NA,NA,NA theislab,covid_macrophages_integration,theislab/covid_macrophages_integration,2,5,0,5,FALSE,https://github.com/theislab/covid_macrophages_integration,2,NA,NA,NA -theislab,cpa,theislab/cpa,80,5,19,18,FALSE,https://github.com/theislab/cpa,80,NA,NA,NA +theislab,cpa,theislab/cpa,80,5,18,18,FALSE,https://github.com/theislab/cpa,80,NA,NA,NA theislab,cpa-reproducibility,theislab/cpa-reproducibility,7,2,1,1,FALSE,https://github.com/theislab/cpa-reproducibility,7,NA,NA,NA theislab,cross_system_integration,theislab/cross_system_integration,10,2,10,1,FALSE,https://github.com/theislab/cross_system_integration,10,NA,NA,NA theislab,dali,theislab/dali,0,7,0,1,FALSE,https://github.com/theislab/dali,0,NA,NA,NA @@ -68,35 +68,13 @@ theislab,diffxpy,theislab/diffxpy,186,6,108,23,FALSE,https://github.com/theislab theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA theislab,disent,theislab/disent,6,3,0,0,FALSE,https://github.com/theislab/disent,6,NA,NA,NA theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA -theislab,ehrapy,theislab/ehrapy,136,5,41,18,FALSE,https://github.com/theislab/ehrapy,136,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows +theislab,ehrapy,theislab/ehrapy,136,5,40,18,FALSE,https://github.com/theislab/ehrapy,136,4e488862b970c6157b961f0b8529869283bb6fe0,"Get rid of lots of sphinx warnings and hide-output (#788) -Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) -theislab,ehrapy,theislab/ehrapy,136,5,41,18,FALSE,https://github.com/theislab/ehrapy,136,e0e081a3308add30d6ba55fcd8b28566e35e9386,Update fig1,[![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) -theislab,ehrapy,theislab/ehrapy,136,5,41,18,FALSE,https://github.com/theislab/ehrapy,136,fd600adf5d6e38df5c82c80211af27f8cbd7c2fe,"[pre-commit.ci] pre-commit autoupdate (#787) +Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724893) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724911) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724909) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724900) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724894) +theislab,ehrapy,theislab/ehrapy,136,5,40,18,FALSE,https://github.com/theislab/ehrapy,136,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows -* [pre-commit.ci] pre-commit autoupdate - -updates: -- [github.com/astral-sh/ruff-pre-commit: v0.5.5 → v0.5.7](https://github.com/astral-sh/ruff-pre-commit/compare/v0.5.5...v0.5.7) -- [github.com/pre-commit/mirrors-mypy: v1.11.0 → v1.11.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.11.0...v1.11.1) - -* use types-setuptools instead of types-pkg-resources - -* [pre-commit.ci] pre-commit autoupdate - -updates: -- [github.com/astral-sh/ruff-pre-commit: v0.5.7 → v0.6.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.5.7...v0.6.1) - -* [pre-commit.ci] auto fixes from pre-commit.com hooks - -for more information, see https://pre-commit.ci - -* add seed to rng - ---------- - -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> -Co-authored-by: Eljas Roellin ",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10466124035) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10466124029) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10466124032) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10466124028) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10466124051) +Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) +theislab,ehrapy,theislab/ehrapy,136,5,40,18,FALSE,https://github.com/theislab/ehrapy,136,e0e081a3308add30d6ba55fcd8b28566e35e9386,Update fig1,[![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) theislab,ehrapy-cli,theislab/ehrapy-cli,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-cli,1,NA,NA,NA theislab,ehrapy-datasets,theislab/ehrapy-datasets,5,2,0,2,FALSE,https://github.com/theislab/ehrapy-datasets,5,e441a5d0912396064360799f10de973b377ba6a5,"Merge pull request #23 from theislab/diabetes-update @@ -116,9 +94,9 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,9,4,0,1,FALSE,http theislab,geome,theislab/geome,16,3,3,4,FALSE,https://github.com/theislab/geome,16,402a0a8cdb442fee8666416e5f163c4098fa0c07,"Merge pull request #55 from theislab/fix/toarray Fix Sparse "".A"" Not Found",[![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10399050996) -theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,0d4e4e5a541c7e05f66b4a08b75537c0427c0b09,[status] 2024-08-19 12:13:13 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/10471125931) +theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,a9bf9a6fb4bd2aad11b0135f442f3d07d257f19b,[status] 2024-08-20 12:12:46 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/10489442332) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA -theislab,graphcompass,theislab/graphcompass,26,2,1,0,FALSE,https://github.com/theislab/graphcompass,26,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) +theislab,graphcompass,theislab/graphcompass,26,2,2,0,FALSE,https://github.com/theislab/graphcompass,26,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,8,3,4,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA theislab,gut_lineage,theislab/gut_lineage,2,3,0,3,FALSE,https://github.com/theislab/gut_lineage,2,NA,NA,NA theislab,hadge,theislab/hadge,24,3,13,6,FALSE,https://github.com/theislab/hadge,24,1ed105ed192e66898ff7a305a2c21f5b8c81bcf7,fix gdown bug,[![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) @@ -142,7 +120,7 @@ theislab,jump-cpg0016-segmentation,theislab/jump-cpg0016-segmentation,6,1,2,0,FA theislab,kBET,theislab/kBET,150,8,9,23,FALSE,https://github.com/theislab/kBET,150,NA,NA,NA theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/kbranches,5,NA,NA,NA theislab,masterpraktikum_ssl_segmentation,theislab/masterpraktikum_ssl_segmentation,2,3,0,2,FALSE,https://github.com/theislab/masterpraktikum_ssl_segmentation,2,NA,NA,NA -theislab,moscot,theislab/moscot,105,3,51,9,FALSE,https://github.com/theislab/moscot,105,36d93bf11a407023e622b21aabca032c1885d249,"Merge pull request #737 from theislab/fix/linting_attr +theislab,moscot,theislab/moscot,106,3,51,9,FALSE,https://github.com/theislab/moscot,106,36d93bf11a407023e622b21aabca032c1885d249,"Merge pull request #737 from theislab/fix/linting_attr Fixing Linting and Plotting Error",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/10212768708) theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,3,2,1,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,3,NA,NA,NA @@ -155,7 +133,7 @@ theislab,mubind,theislab/mubind,22,3,30,0,FALSE,https://github.com/theislab/mubi theislab,mubind-benchmark,theislab/mubind-benchmark,0,2,19,0,FALSE,https://github.com/theislab/mubind-benchmark,0,NA,NA,NA theislab,multicpa,theislab/multicpa,13,2,1,2,FALSE,https://github.com/theislab/multicpa,13,NA,NA,NA theislab,multicpa-reproducibility,theislab/multicpa-reproducibility,0,2,0,0,FALSE,https://github.com/theislab/multicpa-reproducibility,0,NA,NA,NA -theislab,multigrate,theislab/multigrate,12,3,7,4,FALSE,https://github.com/theislab/multigrate,12,NA,NA,NA +theislab,multigrate,theislab/multigrate,12,3,7,5,FALSE,https://github.com/theislab/multigrate,12,NA,NA,NA theislab,multigrate_reproducibility,theislab/multigrate_reproducibility,2,1,0,0,FALSE,https://github.com/theislab/multigrate_reproducibility,2,NA,NA,NA theislab,multimil,theislab/multimil,14,5,3,1,FALSE,https://github.com/theislab/multimil,14,2bb4f90eff483df0b6deff73f505ed2db38fb08e,bumped the version,[![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/10163998577) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/10399053136) theislab,multimil_reproducibility,theislab/multimil_reproducibility,3,3,3,0,FALSE,https://github.com/theislab/multimil_reproducibility,3,NA,NA,NA @@ -168,9 +146,9 @@ theislab,ncem,theislab/ncem,102,6,27,13,FALSE,https://github.com/theislab/ncem,1 theislab,ncem_benchmarks,theislab/ncem_benchmarks,8,4,4,2,FALSE,https://github.com/theislab/ncem_benchmarks,8,NA,NA,NA theislab,ncem_tutorials,theislab/ncem_tutorials,11,4,6,0,FALSE,https://github.com/theislab/ncem_tutorials,11,NA,NA,NA theislab,neural_organoid_atlas,theislab/neural_organoid_atlas,10,4,2,1,FALSE,https://github.com/theislab/neural_organoid_atlas,10,NA,NA,NA -theislab,nicheformer,theislab/nicheformer,41,3,10,2,FALSE,https://github.com/theislab/nicheformer,41,NA,NA,NA +theislab,nicheformer,theislab/nicheformer,42,3,10,2,FALSE,https://github.com/theislab/nicheformer,42,NA,NA,NA theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimulation,0,3,0,1,FALSE,https://github.com/theislab/organoid_dexamethason_stimulation,0,NA,NA,NA -theislab,paga,theislab/paga,197,10,23,33,FALSE,https://github.com/theislab/paga,197,NA,NA,NA +theislab,paga,theislab/paga,198,10,23,33,FALSE,https://github.com/theislab/paga,198,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,7,0,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,5,3,0,6,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,5,NA,NA,NA theislab,pdac_analysis,theislab/pdac_analysis,0,2,0,0,FALSE,https://github.com/theislab/pdac_analysis,0,NA,NA,NA @@ -234,7 +212,7 @@ theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theis theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,4,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA -theislab,single-cell-best-practices,theislab/single-cell-best-practices,720,18,65,166,FALSE,https://github.com/theislab/single-cell-best-practices,720,6461a5c0c8f797ed3ace9909e3e66348d9aef78b,"Fix integration environments (#292) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,722,18,65,167,FALSE,https://github.com/theislab/single-cell-best-practices,722,6461a5c0c8f797ed3ace9909e3e66348d9aef78b,"Fix integration environments (#292) * New mamba action @@ -311,8 +289,8 @@ Signed-off-by: zethson --------- Signed-off-by: zethson ",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535081) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535098) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535076) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535080) -theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,171,8,0,18,FALSE,https://github.com/theislab/single-cell-transformer-papers,171,NA,NA,NA -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1341,30,21,449,FALSE,https://github.com/theislab/single-cell-tutorial,1341,NA,NA,NA +theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,172,8,0,18,FALSE,https://github.com/theislab/single-cell-transformer-papers,172,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1343,30,21,449,FALSE,https://github.com/theislab/single-cell-tutorial,1343,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,5,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,5,NA,NA,NA theislab,spapros,theislab/spapros,23,3,13,6,FALSE,https://github.com/theislab/spapros,23,a7867793a6b1f49047fe33377bc2ae523a7bee6c,"[DEPENDABOT]: Bump pynndescent from 0.5.11 to 0.5.13 in /docs @@ -330,7 +308,7 @@ updated-dependencies: Signed-off-by: dependabot[bot] ",[![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/10459161813) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/10459161788) theislab,spapros,theislab/spapros,23,3,13,6,FALSE,https://github.com/theislab/spapros,23,e8a37c9e78039920a0792fc04f426ab062dbbf88,"Merge pull request #321 from theislab/patch_precommit -pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/10463702003) +pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/10481915986) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,NA,NA,NA theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA theislab,spapros_reproducibility,theislab/spapros_reproducibility,0,1,0,1,FALSE,https://github.com/theislab/spapros_reproducibility,0,NA,NA,NA
theislab/single-cell-best-practices720722 18 65166167 @@ -144,32 +144,32 @@

GitHub Dashboard

theislab/ehrapy 136 54140 1884d33c + + + +4e4888
theislab/ehrapy 136 54140 18e0e08184d33c
theislab/ehrapy 136 54140 18 - - - -fd600ae0e081
theislab/sfaira
theislab/moscot105106 3 51 9 theislab/graphcompass 26 212 0 13 6 - e8a37c
2 0 00d4e4ea9bf9a
theislab/transcription_factor_activity
theislab/single-cell-tutorial13411343 30 21 449
theislab/paga197198 10 23 33
theislab/single-cell-transformer-papers171172 8 0 18 theislab/cpa 80 51918 18
theislab/nicheformer4142 3 10 2 12 3 745
theislab/scanpydoc