diff --git a/README.md b/README.md index c023285..77fa876 100644 --- a/README.md +++ b/README.md @@ -2,17 +2,17 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-06-13 12:10:40 UTC +2024-06-14 12:10:53 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 674 | 17 | 58 | 148 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/9363542512) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/9363542534) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/9363542513) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/9363542526) | bcb43c | -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 674 | 17 | 58 | 148 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 675 | 17 | 58 | 148 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/9363542512) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/9363542534) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/9363542513) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/9363542526) | bcb43c | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 675 | 17 | 58 | 148 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | | [theislab/scvelo](https://github.com/theislab/scvelo) | 396 | 12 | 60 | 102 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | | [theislab/scvelo](https://github.com/theislab/scvelo) | 396 | 12 | 60 | 102 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8665253017) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8665253018) | f21651 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 307 | 8 | 18 | 39 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8601715542) | 08f1c9 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 307 | 8 | 18 | 39 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/9440541938) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/9440605477) | 607491 | -| [theislab/scib](https://github.com/theislab/scib) | 280 | 14 | 37 | 60 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/8788684911) | 9c5a93 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 311 | 8 | 19 | 39 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8601715542) | 08f1c9 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 311 | 8 | 19 | 39 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/9440541938) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/9440605477) | 607491 | +| [theislab/scib](https://github.com/theislab/scib) | 280 | 14 | 37 | 61 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/8788684911) | 9c5a93 | | [theislab/scgen](https://github.com/theislab/scgen) | 248 | 9 | 20 | 51 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | | [theislab/sfaira](https://github.com/theislab/sfaira) | 133 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9457340256) | 55bcbb | | [theislab/sfaira](https://github.com/theislab/sfaira) | 133 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | @@ -22,25 +22,25 @@ GitHub Dashboard | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 130 | 5 | 35 | 16 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 130 | 5 | 35 | 16 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/9164725536) | 869cd3 | | [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 114 | 7 | 15 | 16 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/9461491572) | 9a24fb | -| [theislab/ncem](https://github.com/theislab/ncem) | 99 | 6 | 26 | 13 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | -| [theislab/ncem](https://github.com/theislab/ncem) | 99 | 6 | 26 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | -| [theislab/moscot](https://github.com/theislab/moscot) | 98 | 3 | 53 | 8 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/8263290173) | 6ea9a1 | -| [theislab/destiny](https://github.com/theislab/destiny) | 68 | 5 | 31 | 12 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) | 300eb2 | +| [theislab/ncem](https://github.com/theislab/ncem) | 100 | 6 | 26 | 13 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | +| [theislab/ncem](https://github.com/theislab/ncem) | 100 | 6 | 26 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | +| [theislab/moscot](https://github.com/theislab/moscot) | 98 | 3 | 54 | 8 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/8263290173) | 6ea9a1 | +| [theislab/destiny](https://github.com/theislab/destiny) | 68 | 5 | 32 | 12 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) | 300eb2 | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 47 | 9 | [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | | [theislab/hadge](https://github.com/theislab/hadge) | 23 | 3 | 10 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | | [theislab/hadge](https://github.com/theislab/hadge) | 23 | 3 | 10 | 6 | [![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/9366149796) [![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/9366149805) | 490a55 | | [theislab/spapros](https://github.com/theislab/spapros) | 22 | 3 | 10 | 5 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/9453688335) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/9453688339) | 8df755 | -| [theislab/spapros](https://github.com/theislab/spapros) | 22 | 3 | 10 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/9492210701) | e8a37c | +| [theislab/spapros](https://github.com/theislab/spapros) | 22 | 3 | 10 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/9509207786) | e8a37c | | [theislab/mubind](https://github.com/theislab/mubind) | 20 | 3 | 30 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/9496414877) | d438de | | [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/geome/actions/runs/9339397729) [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/9339397728) | 22ce1f | | [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | | [theislab/graphcompass](https://github.com/theislab/graphcompass) | 15 | 2 | 0 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/9461491357) | 0aebd1 | | [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | -| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 4 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/9478725381) | 0e44fe | +| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 4 | 3 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/9512132380) | c2e091 | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 5 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 4 | 1 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/8315825726) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/8315825728) | f5c767 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/9499221490) | 185413 | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/9515757716) | 425a2d | | [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | @@ -51,7 +51,7 @@ GitHub Dashboard | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| | [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1312 | 30 | 21 | 441 | -| [theislab/scarches](https://github.com/theislab/scarches) | 316 | 13 | 43 | 49 | +| [theislab/scarches](https://github.com/theislab/scarches) | 317 | 13 | 43 | 49 | | [theislab/dca](https://github.com/theislab/dca) | 239 | 11 | 31 | 71 | | [theislab/paga](https://github.com/theislab/paga) | 187 | 10 | 22 | 32 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 177 | 6 | 107 | 23 | @@ -68,9 +68,9 @@ GitHub Dashboard | [theislab/spatial_scog_workshop_2022](https://github.com/theislab/spatial_scog_workshop_2022) | 45 | 9 | 0 | 26 | | [theislab/pseudodynamics](https://github.com/theislab/pseudodynamics) | 39 | 7 | 0 | 6 | | [theislab/tcellmatch](https://github.com/theislab/tcellmatch) | 37 | 9 | 3 | 7 | +| [theislab/nicheformer](https://github.com/theislab/nicheformer) | 32 | 3 | 7 | 2 | | [theislab/scArches-reproducibility](https://github.com/theislab/scArches-reproducibility) | 32 | 5 | 5 | 0 | | [theislab/deepflow](https://github.com/theislab/deepflow) | 31 | 5 | 1 | 14 | -| [theislab/nicheformer](https://github.com/theislab/nicheformer) | 31 | 2 | 7 | 2 | | [theislab/scTab](https://github.com/theislab/scTab) | 29 | 3 | 0 | 3 | | [theislab/DeepRT](https://github.com/theislab/DeepRT) | 27 | 2 | 11 | 10 | | [theislab/scvelo_notebooks](https://github.com/theislab/scvelo_notebooks) | 27 | 2 | 3 | 13 | @@ -202,6 +202,7 @@ GitHub Dashboard | [theislab/organoid_dexamethason_stimulation](https://github.com/theislab/organoid_dexamethason_stimulation) | 0 | 3 | 0 | 1 | | [theislab/pancreas-targeted_pharmacology](https://github.com/theislab/pancreas-targeted_pharmacology) | 0 | 7 | 0 | 2 | | [theislab/pdac_analysis](https://github.com/theislab/pdac_analysis) | 0 | 2 | 0 | 0 | +| [theislab/quasiSCVI](https://github.com/theislab/quasiSCVI) | 0 | 2 | 0 | 0 | | [theislab/reproducability_AutoGeneS](https://github.com/theislab/reproducability_AutoGeneS) | 0 | 3 | 0 | 0 | | [theislab/reproducibility_AutoGeneS](https://github.com/theislab/reproducibility_AutoGeneS) | 0 | 3 | 0 | 0 | | [theislab/scanpy.org](https://github.com/theislab/scanpy.org) | 0 | 7 | 1 | 0 | diff --git a/index.html b/index.html index 50da989..18fb0b1 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

GitHub Dashboard


-2024-06-13 12:12:48 UTC

+2024-06-14 12:12:45 UTC

@@ -74,7 +74,7 @@

GitHub Dashboard

- + @@ -86,7 +86,7 @@

GitHub Dashboard

- + @@ -114,18 +114,18 @@

GitHub Dashboard

- + - + - + - + @@ -136,7 +136,7 @@

GitHub Dashboard

- + @@ -230,7 +230,7 @@

GitHub Dashboard

- + @@ -239,7 +239,7 @@

GitHub Dashboard

- + @@ -251,7 +251,7 @@

GitHub Dashboard

- + @@ -260,7 +260,7 @@

GitHub Dashboard

- + @@ -310,7 +310,7 @@

GitHub Dashboard

+ @@ -374,9 +374,9 @@

GitHub Dashboard

- - - + + + @@ -403,8 +403,8 @@

GitHub Dashboard

- - + + @@ -477,7 +477,7 @@

Repos without Github Actions

- + @@ -595,26 +595,26 @@

Repos without Github Actions

+ + + + + + + - + - - - - - - - @@ -1533,90 +1533,97 @@

Repos without Github Actions

+ + + + + + + - + - + - + - + - + - + - + - + - + - + - + - + diff --git a/repos.csv b/repos.csv index 7b1226b..5cb018d 100644 --- a/repos.csv +++ b/repos.csv @@ -46,14 +46,14 @@ theislab,batchglm,theislab/batchglm,26,3,47,9,FALSE,https://github.com/theislab/ theislab,bindome,theislab/bindome,1,3,5,1,FALSE,https://github.com/theislab/bindome,1,NA,NA,NA theislab,campa,theislab/campa,13,4,5,4,FALSE,https://github.com/theislab/campa,13,NA,NA,NA theislab,campa_ana,theislab/campa_ana,2,4,0,0,FALSE,https://github.com/theislab/campa_ana,2,NA,NA,NA -theislab,cellrank,theislab/cellrank,307,8,18,39,FALSE,https://github.com/theislab/cellrank,307,08f1c901cc4ba1f6500f6fced4df8f5c076755e9,"Fix/importError #1183 (#1184) +theislab,cellrank,theislab/cellrank,311,8,19,39,FALSE,https://github.com/theislab/cellrank,311,08f1c901cc4ba1f6500f6fced4df8f5c076755e9,"Fix/importError #1183 (#1184) * fixed importError, issue #1183 * Removed 'renamed_arg' * linting",[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8601715542) -theislab,cellrank,theislab/cellrank,307,8,18,39,FALSE,https://github.com/theislab/cellrank,307,6074913214f087301dd49bd9ef581c20ec56e759,Fix failing test,[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/9440541938) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/9440605477) +theislab,cellrank,theislab/cellrank,311,8,19,39,FALSE,https://github.com/theislab/cellrank,311,6074913214f087301dd49bd9ef581c20ec56e759,Fix failing test,[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/9440541938) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/9440605477) theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,4,1,0,0,FALSE,https://github.com/theislab/cellrank2_reproducibility,4,f5c767a08bd0db4b58036afaffc91d0a649c90a5,"Add initial state identification (#59) * Add `embryoid_body/initial_state.ipynb` @@ -80,7 +80,7 @@ theislab,cross_system_integration,theislab/cross_system_integration,10,2,10,1,FA theislab,dali,theislab/dali,0,7,0,1,FALSE,https://github.com/theislab/dali,0,NA,NA,NA theislab,dca,theislab/dca,239,11,31,71,FALSE,https://github.com/theislab/dca,239,NA,NA,NA theislab,deepflow,theislab/deepflow,31,5,1,14,FALSE,https://github.com/theislab/deepflow,31,NA,NA,NA -theislab,destiny,theislab/destiny,68,5,31,12,FALSE,https://github.com/theislab/destiny,68,300eb293fb773fb3d667818b946fdd3c62b0aa05,Fix sparse matrix cast and ggplot aes_string deprecations (#65),[![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) +theislab,destiny,theislab/destiny,68,5,32,12,FALSE,https://github.com/theislab/destiny,68,300eb293fb773fb3d667818b946fdd3c62b0aa05,Fix sparse matrix cast and ggplot aes_string deprecations (#65),[![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) theislab,diffxpy,theislab/diffxpy,177,6,107,23,FALSE,https://github.com/theislab/diffxpy,177,NA,NA,NA theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA theislab,disent,theislab/disent,6,3,0,0,FALSE,https://github.com/theislab/disent,6,NA,NA,NA @@ -119,7 +119,7 @@ obs_names and var_names added to fields",[![](https://github.com/theislab/geome/ theislab,geome,theislab/geome,16,3,3,4,FALSE,https://github.com/theislab/geome,16,5bf0cd07b2ea7fa224a37f69232542a9e686c5bf,"Merge pull request #31 from theislab/template-update Automated template update from cookiecutter-scverse",[![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) -theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,1854136d3e12cf56ce313c9cc565bcfcc7bcad9a,[status] 2024-06-12 12:13:26 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/9499221490) +theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,425a2dc61d98ed8e3beb631b09d20019dc77360c,[status] 2024-06-13 12:13:00 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/9515757716) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,graphcompass,theislab/graphcompass,15,2,0,0,FALSE,https://github.com/theislab/graphcompass,15,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,8,3,4,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA @@ -148,33 +148,15 @@ theislab,jump-cpg0016-segmentation,theislab/jump-cpg0016-segmentation,5,1,2,0,FA theislab,kBET,theislab/kBET,148,8,8,23,FALSE,https://github.com/theislab/kBET,148,NA,NA,NA theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/kbranches,5,NA,NA,NA theislab,masterpraktikum_ssl_segmentation,theislab/masterpraktikum_ssl_segmentation,0,3,0,1,FALSE,https://github.com/theislab/masterpraktikum_ssl_segmentation,0,NA,NA,NA -theislab,moscot,theislab/moscot,98,3,53,8,FALSE,https://github.com/theislab/moscot,98,6ea9a1612b829aaa4a1c192210e340a9c08d4ac6,"fix bug in quad problem marginals (#666) +theislab,moscot,theislab/moscot,98,3,54,8,FALSE,https://github.com/theislab/moscot,98,6ea9a1612b829aaa4a1c192210e340a9c08d4ac6,"fix bug in quad problem marginals (#666) Co-authored-by: Dominik Klein ",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/8263290173) theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,1,2,1,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,1,NA,NA,NA theislab,moscot_benchmarks,theislab/moscot_benchmarks,2,2,1,0,FALSE,https://github.com/theislab/moscot_benchmarks,2,NA,NA,NA theislab,moscot_not,theislab/moscot_not,3,2,8,1,FALSE,https://github.com/theislab/moscot_not,3,NA,NA,NA -theislab,moscot_notebooks,theislab/moscot_notebooks,6,1,4,2,FALSE,https://github.com/theislab/moscot_notebooks,6,0e44fe3308e2c2f1d525c20453eae279cdf7522e,"callbacks example (#70) +theislab,moscot_notebooks,theislab/moscot_notebooks,6,1,4,3,FALSE,https://github.com/theislab/moscot_notebooks,6,c2e091c4d6c754d6aedcc7a2fe4cb69262f49918,"{meth} reference target (#76) -* initial draft - -* sloving with different callbacks - -* callback example - -* using graph - -* intro link and geodesic cost - -* change data and custom callback - -* edits - -* edits - ---------- - -Co-authored-by: Arina Danilina ",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/9478725381) +Co-authored-by: Arina Danilina ",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/9512132380) theislab,moslin,theislab/moslin,9,1,0,1,FALSE,https://github.com/theislab/moslin,9,NA,NA,NA theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,7,2,0,3,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,7,NA,NA,NA theislab,mubind,theislab/mubind,20,3,30,0,FALSE,https://github.com/theislab/mubind,20,d438de2eaa16af584c97c0ecd0edb6be45b7d5fa,evaluate examples with graph,[![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/9496414877) @@ -184,14 +166,14 @@ theislab,multigrate,theislab/multigrate,12,3,8,4,FALSE,https://github.com/theisl theislab,multigrate_reproducibility,theislab/multigrate_reproducibility,2,1,0,0,FALSE,https://github.com/theislab/multigrate_reproducibility,2,NA,NA,NA theislab,multires-consensus-clustering,theislab/multires-consensus-clustering,3,4,9,0,FALSE,https://github.com/theislab/multires-consensus-clustering,3,NA,NA,NA theislab,nbconvertR,theislab/nbconvertR,3,3,1,2,FALSE,https://github.com/theislab/nbconvertR,3,NA,NA,NA -theislab,ncem,theislab/ncem,99,6,26,13,FALSE,https://github.com/theislab/ncem,99,216fd576d1d1842234ceec300435a1dafcdf8b0c,"Merge pull request #154 from theislab/development +theislab,ncem,theislab/ncem,100,6,26,13,FALSE,https://github.com/theislab/ncem,100,216fd576d1d1842234ceec300435a1dafcdf8b0c,"Merge pull request #154 from theislab/development update docs and python versions",[![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) -theislab,ncem,theislab/ncem,99,6,26,13,FALSE,https://github.com/theislab/ncem,99,d03a0792b9ab6ea62d2715b57ce50fcf1a84967c,remove patsy dependency,[![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) +theislab,ncem,theislab/ncem,100,6,26,13,FALSE,https://github.com/theislab/ncem,100,d03a0792b9ab6ea62d2715b57ce50fcf1a84967c,remove patsy dependency,[![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) theislab,ncem_benchmarks,theislab/ncem_benchmarks,8,4,4,2,FALSE,https://github.com/theislab/ncem_benchmarks,8,NA,NA,NA theislab,ncem_tutorials,theislab/ncem_tutorials,10,4,5,0,FALSE,https://github.com/theislab/ncem_tutorials,10,NA,NA,NA theislab,neural_organoid_atlas,theislab/neural_organoid_atlas,10,4,2,1,FALSE,https://github.com/theislab/neural_organoid_atlas,10,NA,NA,NA -theislab,nicheformer,theislab/nicheformer,31,2,7,2,FALSE,https://github.com/theislab/nicheformer,31,NA,NA,NA +theislab,nicheformer,theislab/nicheformer,32,3,7,2,FALSE,https://github.com/theislab/nicheformer,32,NA,NA,NA theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimulation,0,3,0,1,FALSE,https://github.com/theislab/organoid_dexamethason_stimulation,0,NA,NA,NA theislab,paga,theislab/paga,187,10,22,32,FALSE,https://github.com/theislab/paga,187,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,7,0,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA @@ -200,6 +182,7 @@ theislab,pdac_analysis,theislab/pdac_analysis,0,2,0,0,FALSE,https://github.com/t theislab,pertpy-datasets,theislab/pertpy-datasets,1,3,0,1,FALSE,https://github.com/theislab/pertpy-datasets,1,NA,NA,NA theislab,perturbation-metrics,theislab/perturbation-metrics,4,2,1,0,FALSE,https://github.com/theislab/perturbation-metrics,4,NA,NA,NA theislab,pseudodynamics,theislab/pseudodynamics,39,7,0,6,FALSE,https://github.com/theislab/pseudodynamics,39,NA,NA,NA +theislab,quasiSCVI,theislab/quasiSCVI,0,2,0,0,FALSE,https://github.com/theislab/quasiSCVI,0,NA,NA,NA theislab,reproducability_AutoGeneS,theislab/reproducability_AutoGeneS,0,3,0,0,FALSE,https://github.com/theislab/reproducability_AutoGeneS,0,NA,NA,NA theislab,reproducibility_AutoGeneS,theislab/reproducibility_AutoGeneS,0,3,0,0,FALSE,https://github.com/theislab/reproducibility_AutoGeneS,0,NA,NA,NA theislab,sc-best-practices-ce,theislab/sc-best-practices-ce,8,8,2,3,FALSE,https://github.com/theislab/sc-best-practices-ce,8,NA,NA,NA @@ -226,12 +209,12 @@ updates: - [github.com/astral-sh/ruff-pre-commit: v0.4.7 → v0.4.8](https://github.com/astral-sh/ruff-pre-commit/compare/v0.4.7...v0.4.8) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/9461491357) -theislab,scarches,theislab/scarches,316,13,43,49,FALSE,https://github.com/theislab/scarches,316,NA,NA,NA +theislab,scarches,theislab/scarches,317,13,43,49,FALSE,https://github.com/theislab/scarches,317,NA,NA,NA theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,6,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,6,NA,NA,NA theislab,scgen,theislab/scgen,248,9,20,51,FALSE,https://github.com/theislab/scgen,248,d79e1f04233c30f9a4eb5b8d57718127909807d7,Merge pull request #87 from theislab/batch_corr_labels,[![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) theislab,scgen-reproducibility,theislab/scgen-reproducibility,18,4,5,8,FALSE,https://github.com/theislab/scgen-reproducibility,18,NA,NA,NA -theislab,scib,theislab/scib,280,14,37,60,FALSE,https://github.com/theislab/scib,NA,9c5a936b0ecf21ba09b1bc803712a42c2a942fbc,"Use precomputed clustering (#406) +theislab,scib,theislab/scib,280,14,37,61,FALSE,https://github.com/theislab/scib,NA,9c5a936b0ecf21ba09b1bc803712a42c2a942fbc,"Use precomputed clustering (#406) * cluster only when clustering key does not exist or if forced @@ -281,7 +264,7 @@ theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theis theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,3,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA -theislab,single-cell-best-practices,theislab/single-cell-best-practices,674,17,58,148,FALSE,https://github.com/theislab/single-cell-best-practices,674,bcb43c7a11be0f012fe67df202ce78abf443a8cf,"Mostly minor text changes plus mentioning 5' kits (#279) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,675,17,58,148,FALSE,https://github.com/theislab/single-cell-best-practices,675,bcb43c7a11be0f012fe67df202ce78abf443a8cf,"Mostly minor text changes plus mentioning 5' kits (#279) * Improve clarity (hopefully) @@ -313,7 +296,7 @@ Signed-off-by: zethson Signed-off-by: zethson Co-authored-by: zethson ",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/9363542512) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/9363542534) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/9363542513) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/9363542526) -theislab,single-cell-best-practices,theislab/single-cell-best-practices,674,17,58,148,FALSE,https://github.com/theislab/single-cell-best-practices,674,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,675,17,58,148,FALSE,https://github.com/theislab/single-cell-best-practices,675,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) * scATAC_pp @@ -447,7 +430,7 @@ updated-dependencies: Signed-off-by: dependabot[bot] ",[![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/9453688335) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/9453688339) theislab,spapros,theislab/spapros,22,3,10,5,FALSE,https://github.com/theislab/spapros,22,e8a37c9e78039920a0792fc04f426ab062dbbf88,"Merge pull request #321 from theislab/patch_precommit -pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/9492210701) +pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/9509207786) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,NA,NA,NA theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA theislab,spapros_reproducibility,theislab/spapros_reproducibility,0,1,0,0,FALSE,https://github.com/theislab/spapros_reproducibility,0,NA,NA,NA
theislab/single-cell-best-practices674675 17 58 148
theislab/single-cell-best-practices674675 17 58 148
theislab/cellrank307311 81819 39 08f1c9
theislab/cellrank307311 81819 39 280 14 376061 9c5a93
theislab/ncem99100 6 26 13
theislab/ncem99100 6 26 13 theislab/moscot 98 35354 8 6ea9a1 theislab/destiny 68 53132 12 300eb2 10 5 - e8a37c
6 1 420e44fe3c2e091
theislab/ehrapy-datasets 2 0 0185413425a2d
theislab/transcription_factor_activity
theislab/scarches316317 13 43 49 7
theislab/nicheformer32372
theislab/scArches-reproducibility 32 5 5 0
theislab/deepflow 31 5 1 14
theislab/nicheformer31272
theislab/scTab 29 0
theislab/quasiSCVI0200
theislab/reproducability_AutoGeneS 0 3 0 0
theislab/reproducibility_AutoGeneS 0 3 0 0
theislab/scanpy.org 0 7 1 0
theislab/scanpy_neighbors 0 3 0 1
theislab/scarches_notebooks 0 3 0 0
theislab/sc_ketamine_analysis 0 4 0 0
theislab/sfaira-portal 0 4 2 0
theislab/sfaira-site 0 4 0 0
theislab/sfaira_benchmarks 0 3 0 0
theislab/sfaira_extension 0 3 1 0
theislab/spapros-smk 0 2 0 1
theislab/spapros_reproducibility 0 1 0 0
theislab/tissue 0 3