diff --git a/README.md b/README.md index 303a8f5..7c992d3 100644 --- a/README.md +++ b/README.md @@ -2,17 +2,16 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-08-04 12:10:22 UTC +2024-08-05 12:11:19 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 708 | 18 | 64 | 164 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10201665149) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10201665150) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10201665142) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10201665171) | e45ea7 | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 708 | 18 | 64 | 165 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10201665149) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10201665150) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10201665142) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10201665171) | e45ea7 | | [theislab/scvelo](https://github.com/theislab/scvelo) | 403 | 13 | 61 | 102 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/9892975902) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/9892975897) | 3fbce6 | | [theislab/scvelo](https://github.com/theislab/scvelo) | 403 | 13 | 61 | 102 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 334 | 9 | 19 | 43 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8601715542) | 08f1c9 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 334 | 9 | 19 | 43 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10135902176) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10135978914) | 607491 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 335 | 9 | 18 | 43 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10240409573) [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10239706729) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10240484898) | 43c32b | | [theislab/scib](https://github.com/theislab/scib) | 284 | 14 | 41 | 62 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/8788684911) | 9c5a93 | -| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 141 | 5 | 24 | 27 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/9611012269) | 328e7e | +| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 142 | 5 | 24 | 27 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/9611012269) | 328e7e | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 136 | 5 | 39 | 18 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 136 | 5 | 39 | 18 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/9164725536) | 869cd3 | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 136 | 5 | 39 | 18 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10174964324) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10174964328) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10174964330) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10174964335) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10174964334) | 8eda2c | @@ -20,25 +19,25 @@ GitHub Dashboard | [theislab/sfaira](https://github.com/theislab/sfaira) | 134 | 8 | 167 | 12 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 134 | 8 | 167 | 12 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | | [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 122 | 7 | 15 | 16 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/10157600769) | 41313c | -| [theislab/moscot](https://github.com/theislab/moscot) | 105 | 3 | 51 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/10212768708) | 36d93b | +| [theislab/moscot](https://github.com/theislab/moscot) | 105 | 3 | 51 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/10212768708) [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/10240418790) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/10240364619) | 36d93b | | [theislab/ncem](https://github.com/theislab/ncem) | 101 | 6 | 27 | 13 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | | [theislab/ncem](https://github.com/theislab/ncem) | 101 | 6 | 27 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | -| [theislab/destiny](https://github.com/theislab/destiny) | 70 | 5 | 32 | 12 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) | 300eb2 | +| [theislab/destiny](https://github.com/theislab/destiny) | 71 | 5 | 32 | 12 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) | 300eb2 | | [theislab/graphcompass](https://github.com/theislab/graphcompass) | 23 | 2 | 0 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | | [theislab/hadge](https://github.com/theislab/hadge) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | | [theislab/hadge](https://github.com/theislab/hadge) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/9366149796) [![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/9366149805) | 490a55 | | [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/9969684855) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/9969684854) | d9eb37 | -| [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/10232455781) | e8a37c | +| [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/10241063415) | e8a37c | | [theislab/mubind](https://github.com/theislab/mubind) | 20 | 3 | 30 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10160618373) | 9c315b | | [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10192312926) | 402a0a | +| [theislab/multimil](https://github.com/theislab/multimil) | 12 | 5 | 3 | 1 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/10163998577) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/10192315109) | 2bb4f9 | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/10157600746) | d2f571 | -| [theislab/multimil](https://github.com/theislab/multimil) | 11 | 6 | 3 | 1 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/10163998577) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/10192315109) | 2bb4f9 | | [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | -| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 3 | 3 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/10135943972) | 5b9d4e | +| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 3 | 3 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/10240450530) | 5b9d4e | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 5 | 1 | 1 | 1 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/9877064958) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/9877064964) | 9f82e8 | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 5 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | | [theislab/ehrdata](https://github.com/theislab/ehrdata) | 5 | 3 | 1 | 1 | [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/10192343708) | 502662 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/10236007028) | c86877 | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/10248396298) | b41e07 | | [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | @@ -47,14 +46,14 @@ GitHub Dashboard | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1335 | 30 | 21 | 445 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1335 | 30 | 21 | 446 | | [theislab/scarches](https://github.com/theislab/scarches) | 323 | 13 | 44 | 50 | | [theislab/scgen](https://github.com/theislab/scgen) | 256 | 9 | 24 | 51 | | [theislab/dca](https://github.com/theislab/dca) | 241 | 11 | 31 | 71 | | [theislab/paga](https://github.com/theislab/paga) | 196 | 10 | 23 | 33 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 186 | 6 | 108 | 23 | | [theislab/kBET](https://github.com/theislab/kBET) | 149 | 8 | 9 | 23 | -| [theislab/scCODA](https://github.com/theislab/scCODA) | 145 | 9 | 8 | 22 | +| [theislab/scCODA](https://github.com/theislab/scCODA) | 145 | 9 | 9 | 22 | | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 139 | 5 | 6 | 10 | | [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 137 | 8 | 0 | 12 | | [theislab/chemCPA](https://github.com/theislab/chemCPA) | 95 | 5 | 10 | 23 | @@ -62,14 +61,14 @@ GitHub Dashboard | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 61 | 7 | 17 | 28 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 53 | 6 | 5 | 8 | | [theislab/trVAE](https://github.com/theislab/trVAE) | 53 | 7 | 3 | 11 | -| [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 51 | 6 | 3 | 14 | +| [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 52 | 6 | 3 | 14 | | [theislab/spatial_scog_workshop_2022](https://github.com/theislab/spatial_scog_workshop_2022) | 47 | 9 | 0 | 27 | | [theislab/pseudodynamics](https://github.com/theislab/pseudodynamics) | 39 | 7 | 0 | 6 | | [theislab/nicheformer](https://github.com/theislab/nicheformer) | 38 | 3 | 8 | 2 | | [theislab/tcellmatch](https://github.com/theislab/tcellmatch) | 37 | 9 | 3 | 7 | | [theislab/scArches-reproducibility](https://github.com/theislab/scArches-reproducibility) | 33 | 5 | 5 | 0 | +| [theislab/scTab](https://github.com/theislab/scTab) | 32 | 3 | 0 | 4 | | [theislab/deepflow](https://github.com/theislab/deepflow) | 31 | 5 | 1 | 14 | -| [theislab/scTab](https://github.com/theislab/scTab) | 30 | 3 | 0 | 4 | | [theislab/scvelo_notebooks](https://github.com/theislab/scvelo_notebooks) | 29 | 2 | 4 | 12 | | [theislab/batchglm](https://github.com/theislab/batchglm) | 27 | 3 | 47 | 9 | | [theislab/DeepRT](https://github.com/theislab/DeepRT) | 27 | 2 | 11 | 10 | diff --git a/index.html b/index.html index 7d26786..3cb28dc 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

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Repos without Github Actions

+ + + + + + + - - - - - - - diff --git a/repos.csv b/repos.csv index 2acbb23..ad4f3f9 100644 --- a/repos.csv +++ b/repos.csv @@ -48,14 +48,7 @@ theislab,batchglm,theislab/batchglm,27,3,47,9,FALSE,https://github.com/theislab/ theislab,bindome,theislab/bindome,1,3,5,1,FALSE,https://github.com/theislab/bindome,1,NA,NA,NA theislab,campa,theislab/campa,14,4,5,4,FALSE,https://github.com/theislab/campa,14,NA,NA,NA theislab,campa_ana,theislab/campa_ana,2,4,0,0,FALSE,https://github.com/theislab/campa_ana,2,NA,NA,NA -theislab,cellrank,theislab/cellrank,334,9,19,43,FALSE,https://github.com/theislab/cellrank,334,08f1c901cc4ba1f6500f6fced4df8f5c076755e9,"Fix/importError #1183 (#1184) - -* fixed importError, issue #1183 - -* Removed 'renamed_arg' - -* linting",[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8601715542) -theislab,cellrank,theislab/cellrank,334,9,19,43,FALSE,https://github.com/theislab/cellrank,334,6074913214f087301dd49bd9ef581c20ec56e759,Fix failing test,[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10135902176) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10135978914) +theislab,cellrank,theislab/cellrank,335,9,18,43,FALSE,https://github.com/theislab/cellrank,335,43c32bb904243bbfc9dba2b2faea3607d50c95a5,Remove numba cache (#1212),[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10240409573) [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10239706729) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10240484898) theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,5,1,1,1,FALSE,https://github.com/theislab/cellrank2_reproducibility,5,9f82e87ae090f08302b760ba13ec660b3d11ef5d,"Update `labeling_kernel/inference.ipynb` (#62) Specify initial parameter estimate as `None`.",[![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/9877064958) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/9877064964) @@ -74,7 +67,7 @@ theislab,cross_system_integration,theislab/cross_system_integration,10,2,10,1,FA theislab,dali,theislab/dali,0,7,0,1,FALSE,https://github.com/theislab/dali,0,NA,NA,NA theislab,dca,theislab/dca,241,11,31,71,FALSE,https://github.com/theislab/dca,241,NA,NA,NA theislab,deepflow,theislab/deepflow,31,5,1,14,FALSE,https://github.com/theislab/deepflow,31,NA,NA,NA -theislab,destiny,theislab/destiny,70,5,32,12,FALSE,https://github.com/theislab/destiny,70,300eb293fb773fb3d667818b946fdd3c62b0aa05,Fix sparse matrix cast and ggplot aes_string deprecations (#65),[![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) +theislab,destiny,theislab/destiny,71,5,32,12,FALSE,https://github.com/theislab/destiny,71,300eb293fb773fb3d667818b946fdd3c62b0aa05,Fix sparse matrix cast and ggplot aes_string deprecations (#65),[![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) theislab,diffxpy,theislab/diffxpy,186,6,108,23,FALSE,https://github.com/theislab/diffxpy,186,NA,NA,NA theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA theislab,disent,theislab/disent,6,3,0,0,FALSE,https://github.com/theislab/disent,6,NA,NA,NA @@ -110,7 +103,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,9,4,0,1,FALSE,http theislab,geome,theislab/geome,16,3,3,4,FALSE,https://github.com/theislab/geome,16,402a0a8cdb442fee8666416e5f163c4098fa0c07,"Merge pull request #55 from theislab/fix/toarray Fix Sparse "".A"" Not Found",[![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10192312926) -theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,c86877a4c3666d18ec168d3d57a6b621a97c6cff,[status] 2024-08-03 12:11:32 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/10236007028) +theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,b41e07ff9dc76d5c225cac0970a6b0ecfcb05aa5,[status] 2024-08-04 12:11:44 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/10248396298) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,graphcompass,theislab/graphcompass,23,2,0,0,FALSE,https://github.com/theislab/graphcompass,23,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,8,3,4,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA @@ -138,13 +131,13 @@ theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/ theislab,masterpraktikum_ssl_segmentation,theislab/masterpraktikum_ssl_segmentation,1,3,0,1,FALSE,https://github.com/theislab/masterpraktikum_ssl_segmentation,1,NA,NA,NA theislab,moscot,theislab/moscot,105,3,51,9,FALSE,https://github.com/theislab/moscot,105,36d93bf11a407023e622b21aabca032c1885d249,"Merge pull request #737 from theislab/fix/linting_attr -Fixing Linting and Plotting Error",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/10212768708) +Fixing Linting and Plotting Error",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/10212768708) [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/10240418790) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/10240364619) theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,2,2,1,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,2,NA,NA,NA theislab,moscot_benchmarks,theislab/moscot_benchmarks,2,2,1,0,FALSE,https://github.com/theislab/moscot_benchmarks,2,NA,NA,NA theislab,moscot_not,theislab/moscot_not,3,2,8,1,FALSE,https://github.com/theislab/moscot_not,3,NA,NA,NA theislab,moscot_notebooks,theislab/moscot_notebooks,6,1,3,3,FALSE,https://github.com/theislab/moscot_notebooks,6,5b9d4e07d7188b1c391ec47a1c5d957da1ab2bca,"attribute and argument fixes (#80) -Co-authored-by: Arina Danilina ",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/10135943972) +Co-authored-by: Arina Danilina ",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/10240450530) theislab,moslin,theislab/moslin,9,1,0,1,FALSE,https://github.com/theislab/moslin,9,NA,NA,NA theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,7,2,0,3,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,7,NA,NA,NA theislab,mubind,theislab/mubind,20,3,30,0,FALSE,https://github.com/theislab/mubind,20,9c315b05556638e229e422d6924ef7bd4c66e691,pytest,[![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10160618373) @@ -152,7 +145,7 @@ theislab,multicpa,theislab/multicpa,13,2,1,2,FALSE,https://github.com/theislab/m theislab,multicpa-reproducibility,theislab/multicpa-reproducibility,0,2,0,0,FALSE,https://github.com/theislab/multicpa-reproducibility,0,NA,NA,NA theislab,multigrate,theislab/multigrate,12,3,7,4,FALSE,https://github.com/theislab/multigrate,12,NA,NA,NA theislab,multigrate_reproducibility,theislab/multigrate_reproducibility,2,1,0,0,FALSE,https://github.com/theislab/multigrate_reproducibility,2,NA,NA,NA -theislab,multimil,theislab/multimil,11,6,3,1,FALSE,https://github.com/theislab/multimil,11,2bb4f90eff483df0b6deff73f505ed2db38fb08e,bumped the version,[![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/10163998577) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/10192315109) +theislab,multimil,theislab/multimil,12,5,3,1,FALSE,https://github.com/theislab/multimil,12,2bb4f90eff483df0b6deff73f505ed2db38fb08e,bumped the version,[![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/10163998577) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/10192315109) theislab,multimil_reproducibility,theislab/multimil_reproducibility,2,3,3,0,FALSE,https://github.com/theislab/multimil_reproducibility,2,NA,NA,NA theislab,multires-consensus-clustering,theislab/multires-consensus-clustering,3,4,9,0,FALSE,https://github.com/theislab/multires-consensus-clustering,3,NA,NA,NA theislab,nbconvertR,theislab/nbconvertR,3,3,1,2,FALSE,https://github.com/theislab/nbconvertR,3,NA,NA,NA @@ -179,12 +172,12 @@ theislab,sc-best-practices-ce,theislab/sc-best-practices-ce,8,8,2,3,FALSE,https: theislab,sc-pert,theislab/sc-pert,139,5,6,10,FALSE,https://github.com/theislab/sc-pert,139,NA,NA,NA theislab,scAnalysisTutorial,theislab/scAnalysisTutorial,10,3,0,3,FALSE,https://github.com/theislab/scAnalysisTutorial,10,NA,NA,NA theislab,scArches-reproducibility,theislab/scArches-reproducibility,33,5,5,0,FALSE,https://github.com/theislab/scArches-reproducibility,33,NA,NA,NA -theislab,scCODA,theislab/scCODA,145,9,8,22,FALSE,https://github.com/theislab/scCODA,145,NA,NA,NA +theislab,scCODA,theislab/scCODA,145,9,9,22,FALSE,https://github.com/theislab/scCODA,145,NA,NA,NA theislab,scCODA_reproducibility,theislab/scCODA_reproducibility,7,5,0,1,FALSE,https://github.com/theislab/scCODA_reproducibility,7,NA,NA,NA theislab,scPoli_legacy,theislab/scPoli_legacy,2,5,0,0,FALSE,https://github.com/theislab/scPoli_legacy,2,NA,NA,NA theislab,scPoli_reproduce,theislab/scPoli_reproduce,13,3,2,4,FALSE,https://github.com/theislab/scPoli_reproduce,13,NA,NA,NA theislab,scProtVelo,theislab/scProtVelo,0,0,0,0,FALSE,https://github.com/theislab/scProtVelo,0,NA,NA,NA -theislab,scTab,theislab/scTab,30,3,0,4,FALSE,https://github.com/theislab/scTab,30,NA,NA,NA +theislab,scTab,theislab/scTab,32,3,0,4,FALSE,https://github.com/theislab/scTab,32,NA,NA,NA theislab,sc_analysis_template,theislab/sc_analysis_template,3,3,0,0,FALSE,https://github.com/theislab/sc_analysis_template,3,NA,NA,NA theislab,sc_ketamine_analysis,theislab/sc_ketamine_analysis,0,4,0,0,FALSE,https://github.com/theislab/sc_ketamine_analysis,0,NA,NA,NA theislab,sc_mae,theislab/sc_mae,1,2,0,0,FALSE,https://github.com/theislab/sc_mae,1,NA,NA,NA @@ -231,7 +224,7 @@ theislab,scib,theislab/scib,284,14,41,62,FALSE,https://github.com/theislab/scib, * use graph connectivity for scanorama",[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/8788684911) theislab,scib-pipeline,theislab/scib-pipeline,61,7,17,28,FALSE,https://github.com/theislab/scib-pipeline,61,NA,NA,NA -theislab,scib-reproducibility,theislab/scib-reproducibility,51,6,3,14,FALSE,https://github.com/theislab/scib-reproducibility,51,NA,NA,NA +theislab,scib-reproducibility,theislab/scib-reproducibility,52,6,3,14,FALSE,https://github.com/theislab/scib-reproducibility,52,NA,NA,NA theislab,scvelo,theislab/scvelo,403,13,61,102,FALSE,https://github.com/theislab/scvelo,403,3fbce6ff6d644a44911091f498efa0c69f6b85b0,"Update densifying sparse array (#1263) Switch from `.A` to `.toarray()`",[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/9892975902) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/9892975897) @@ -247,18 +240,18 @@ theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theis theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,4,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA -theislab,single-cell-best-practices,theislab/single-cell-best-practices,708,18,64,164,FALSE,https://github.com/theislab/single-cell-best-practices,708,e45ea77c4eca4d63c7fd1753780cc0c1eb4e6ffc,"While at it... (#290) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,708,18,64,165,FALSE,https://github.com/theislab/single-cell-best-practices,708,e45ea77c4eca4d63c7fd1753780cc0c1eb4e6ffc,"While at it... (#290) * fix the name for the Holland reference * quite a large one, with some typos fixed all in one go",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10201665149) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10201665150) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10201665142) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10201665171) theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,137,8,0,12,FALSE,https://github.com/theislab/single-cell-transformer-papers,137,NA,NA,NA -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1335,30,21,445,FALSE,https://github.com/theislab/single-cell-tutorial,1335,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1335,30,21,446,FALSE,https://github.com/theislab/single-cell-tutorial,1335,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,5,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,5,NA,NA,NA theislab,spapros,theislab/spapros,23,3,13,6,FALSE,https://github.com/theislab/spapros,23,d9eb37799b6a261a120fba28fd66f695afdea83c,update notebook to pipeline changes,[![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/9969684855) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/9969684854) theislab,spapros,theislab/spapros,23,3,13,6,FALSE,https://github.com/theislab/spapros,23,e8a37c9e78039920a0792fc04f426ab062dbbf88,"Merge pull request #321 from theislab/patch_precommit -pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/10232455781) +pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/10241063415) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,NA,NA,NA theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA theislab,spapros_reproducibility,theislab/spapros_reproducibility,0,1,0,1,FALSE,https://github.com/theislab/spapros_reproducibility,0,NA,NA,NA @@ -280,7 +273,7 @@ theislab,transcription_factor_activity,theislab/transcription_factor_activity,1, theislab,trvaep,theislab/trvaep,9,3,0,5,FALSE,https://github.com/theislab/trvaep,9,NA,NA,NA theislab,unbalanced_monge_maps_single_cell,theislab/unbalanced_monge_maps_single_cell,1,1,0,0,FALSE,https://github.com/theislab/unbalanced_monge_maps_single_cell,1,NA,NA,NA theislab,zebrafish_bipolarity,theislab/zebrafish_bipolarity,1,4,0,1,FALSE,https://github.com/theislab/zebrafish_bipolarity,1,NA,NA,NA -theislab,zellkonverter,theislab/zellkonverter,141,5,24,27,FALSE,https://github.com/theislab/zellkonverter,141,328e7ea895196dbac6229ad3076e9b6ed00b7afe,"Merge branch 'RELEASE_3_19' into devel +theislab,zellkonverter,theislab/zellkonverter,142,5,24,27,FALSE,https://github.com/theislab/zellkonverter,142,328e7ea895196dbac6229ad3076e9b6ed00b7afe,"Merge branch 'RELEASE_3_19' into devel * RELEASE_3_19: Bump release version
708 18 64164165 @@ -105,24 +105,16 @@

GitHub Dashboard

theislab/cellrank334335 91918 4308f1c9 + +43c32b
theislab/cellrank33491943 -607491
theislab/scib 284 14 9c5a93
theislab/zellkonverter141142 5 24 27 328e7e
theislab/ehrapy 136 5 84d33c
theislab/ehrapy 136 5 869cd3
theislab/ehrapy 136 5 8eda2c
theislab/sfaira 134 8 55bcbb
theislab/sfaira 134 8 5fcf93
theislab/sfaira 134 8 ceb14c
theislab/anndata2ri 122 7 41313c
theislab/moscot 105 3 51 9 + + 36d93b
theislab/ncem 101 6 216fd5
theislab/ncem 101 6 d03a07
theislab/destiny7071 5 32 12 300eb2
theislab/graphcompass 23 2 7c4551
theislab/hadge 23 3 1ed105
theislab/hadge 23 3 490a55
theislab/spapros 23 3 d9eb37
theislab/spapros 23 3 13 6 - e8a37c
theislab/mubind 20 3 9c315b
theislab/geome 16 3 402a0a
theislab/multimil12531 +2bb4f9
theislab/scanpydoc 12 d2f571
theislab/multimil11631 -2bb4f9
theislab/cellrank_notebooks 6 4 677784
theislab/moscot_notebooks 6 1 3 3 5b9d4e
theislab/cellrank2_reproducibility 5 1 9f82e8
theislab/ehrapy-datasets 5 2 e441a5
theislab/ehrdata 5 3 502662
theislab/gh-dashboard 1 2 0 0c86877b41e07
theislab/transcription_factor_activity 1 1 ced39f
theislab/idtrack 0 1 12aa73
theislab/idtrack 0 1 1335 30 21445446
theislab/scarches theislab/scCODA 145 989 22
theislab/scib-reproducibility5152 6 3 14 0
theislab/scTab32304
theislab/deepflow 31 5 1 14
theislab/scTab30304
theislab/scvelo_notebooks 29