diff --git a/README.md b/README.md index 2d7c0e7..457bd1d 100644 --- a/README.md +++ b/README.md @@ -2,51 +2,53 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-05-05 12:10:21 UTC +2024-05-06 12:10:23 UTC -| Repo | Stars | Subscribers | Issues | Forks | Status | Commit | -|:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 642 | 18 | 56 | 141 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064601) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064600) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064597) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064598) | b7335c | -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 642 | 18 | 56 | 141 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | -| [theislab/scvelo](https://github.com/theislab/scvelo) | 392 | 12 | 57 | 101 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | -| [theislab/scvelo](https://github.com/theislab/scvelo) | 392 | 12 | 57 | 101 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8665253017) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8665253018) | f21651 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 305 | 8 | 17 | 38 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8601715542) | 08f1c9 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 305 | 8 | 17 | 38 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8871435139) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8871494371) | 607491 | -| [theislab/scib](https://github.com/theislab/scib) | 275 | 14 | 36 | 57 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/8788684911) | 9c5a93 | -| [theislab/scgen](https://github.com/theislab/scgen) | 247 | 9 | 19 | 52 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 133 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/8954152108) | 55bcbb | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 133 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 133 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | -| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 132 | 5 | 23 | 26 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/8798884374) | 21fd89 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 118 | 5 | 33 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8390347476) | 27d854 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 118 | 5 | 33 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 118 | 5 | 33 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8957501874) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8957501879) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8957501872) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8957501870) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8957501880) | b25f2d | -| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 114 | 7 | 15 | 16 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/8891080742) | befee8 | -| [theislab/ncem](https://github.com/theislab/ncem) | 97 | 6 | 26 | 13 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | -| [theislab/ncem](https://github.com/theislab/ncem) | 97 | 6 | 26 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | -| [theislab/moscot](https://github.com/theislab/moscot) | 94 | 3 | 40 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/8263290173) | 6ea9a1 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 81 | 4 | 24 | 16 | [![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446183) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446170) [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446165) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446171) | 54b7f3 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 81 | 4 | 24 | 16 | [![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8679592172) | be4cce | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 81 | 4 | 24 | 16 | [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8922981910) [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8922981904) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8922981905) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8922981912) | df4b8a | -| [theislab/destiny](https://github.com/theislab/destiny) | 67 | 5 | 31 | 12 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) | 300eb2 | -| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 47 | 9 | [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | -| [theislab/hadge](https://github.com/theislab/hadge) | 22 | 3 | 12 | 5 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | -| [theislab/hadge](https://github.com/theislab/hadge) | 22 | 3 | 12 | 5 | [![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/8468875722) [![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/8468875726) | 6441e6 | -| [theislab/spapros](https://github.com/theislab/spapros) | 21 | 3 | 7 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/8954702975) | e8a37c | -| [theislab/spapros](https://github.com/theislab/spapros) | 21 | 3 | 7 | 5 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/8884867584) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/8884867592) | f256c7 | -| [theislab/geome](https://github.com/theislab/geome) | 15 | 3 | 0 | 4 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | -| [theislab/geome](https://github.com/theislab/geome) | 15 | 3 | 0 | 4 | [![](https://github.com/theislab/geome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/geome/actions/runs/8900509976) [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/8905593851) | 991a31 | -| [theislab/graphcompass](https://github.com/theislab/graphcompass) | 15 | 2 | 0 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | -| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/8891079745) | 849e5c | -| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | -| [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 5 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | -| [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 4 | 1 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/8315825726) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/8315825728) | f5c767 | -| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 4 | 3 | 1 | 1 | [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/8905618087) | 679be0 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/8958035700) | a801c8 | -| [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | +| Repo | Stars | Subscribers | Issues | Forks | Status | Commit | +|:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 642 | 18 | 56 | 141 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064601) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064600) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064597) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/8587064598) | b7335c | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 642 | 18 | 56 | 141 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | +| [theislab/scvelo](https://github.com/theislab/scvelo) | 392 | 12 | 57 | 101 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | +| [theislab/scvelo](https://github.com/theislab/scvelo) | 392 | 12 | 57 | 101 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8665253017) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8665253018) | f21651 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 305 | 8 | 17 | 38 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8601715542) | 08f1c9 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 305 | 8 | 17 | 38 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8962180577) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8962240926) | 607491 | +| [theislab/scib](https://github.com/theislab/scib) | 276 | 14 | 36 | 57 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/8788684911) | 9c5a93 | +| [theislab/scgen](https://github.com/theislab/scgen) | 247 | 9 | 19 | 52 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 133 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/8962116124) | 55bcbb | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 133 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 133 | 8 | 166 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | +| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 132 | 5 | 23 | 26 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/8968608190) | 7b1186 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 118 | 5 | 32 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8965688924) | 18a377 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 118 | 5 | 32 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8390347476) | 27d854 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 118 | 5 | 32 | 14 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | +| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 114 | 7 | 15 | 16 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/8891080742) | befee8 | +| [theislab/ncem](https://github.com/theislab/ncem) | 97 | 6 | 26 | 13 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | +| [theislab/ncem](https://github.com/theislab/ncem) | 97 | 6 | 26 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | +| [theislab/moscot](https://github.com/theislab/moscot) | 94 | 3 | 40 | 6 | [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/8962188905) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/8962144965) | 389e00 | +| [theislab/moscot](https://github.com/theislab/moscot) | 94 | 3 | 40 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/8263290173) | 6ea9a1 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 81 | 4 | 24 | 16 | [![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446183) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446170) [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446165) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/7971446171) | 54b7f3 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 81 | 4 | 24 | 16 | [![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8679592172) | be4cce | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 81 | 4 | 24 | 16 | [![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8966061587) [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8966061584) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8966061582) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8966061583) | d0c6a3 | +| [theislab/destiny](https://github.com/theislab/destiny) | 67 | 5 | 31 | 12 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/7347769080) | 300eb2 | +| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 3 | 47 | 9 | [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | +| [theislab/hadge](https://github.com/theislab/hadge) | 22 | 3 | 12 | 5 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | +| [theislab/hadge](https://github.com/theislab/hadge) | 22 | 3 | 12 | 5 | [![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/8468875722) [![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/8468875726) | 6441e6 | +| [theislab/spapros](https://github.com/theislab/spapros) | 21 | 3 | 7 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/8962740931) | e8a37c | +| [theislab/spapros](https://github.com/theislab/spapros) | 21 | 3 | 7 | 5 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/8884867584) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/8884867592) | f256c7 | +| [theislab/geome](https://github.com/theislab/geome) | 15 | 3 | 0 | 4 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | +| [theislab/geome](https://github.com/theislab/geome) | 15 | 3 | 0 | 4 | [![](https://github.com/theislab/geome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/geome/actions/runs/8900509976) [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/8905593851) | 991a31 | +| [theislab/graphcompass](https://github.com/theislab/graphcompass) | 15 | 2 | 0 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | +| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/8891079745) | 849e5c | +| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | +| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 4 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/8962213087) | bc71ed | +| [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 5 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | +| [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 4 | 1 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/8315825726) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/8315825728) | f5c767 | +| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 4 | 3 | 1 | 1 | [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/8905618087) | 679be0 | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/8968708908) | bbb169 | +| [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | ## Repos without Github Actions @@ -62,7 +64,7 @@ GitHub Dashboard | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 129 | 6 | 6 | 10 | | [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 101 | 6 | 0 | 10 | | [theislab/chemCPA](https://github.com/theislab/chemCPA) | 88 | 5 | 9 | 22 | -| [theislab/cpa](https://github.com/theislab/cpa) | 74 | 4 | 15 | 15 | +| [theislab/cpa](https://github.com/theislab/cpa) | 74 | 4 | 14 | 15 | | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 59 | 7 | 16 | 27 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 53 | 6 | 5 | 8 | | [theislab/trVAE](https://github.com/theislab/trVAE) | 53 | 7 | 2 | 11 | @@ -77,18 +79,18 @@ GitHub Dashboard | [theislab/graph_abstraction](https://github.com/theislab/graph_abstraction) | 26 | 8 | 0 | 10 | | [theislab/scvelo_notebooks](https://github.com/theislab/scvelo_notebooks) | 26 | 2 | 2 | 13 | | [theislab/Covid_meta_analysis](https://github.com/theislab/Covid_meta_analysis) | 24 | 8 | 2 | 11 | -| [theislab/nicheformer](https://github.com/theislab/nicheformer) | 23 | 2 | 3 | 2 | +| [theislab/nicheformer](https://github.com/theislab/nicheformer) | 23 | 2 | 2 | 2 | | [theislab/interactive_plotting](https://github.com/theislab/interactive_plotting) | 21 | 4 | 11 | 7 | | [theislab/mubind](https://github.com/theislab/mubind) | 20 | 3 | 30 | 0 | | [theislab/scgen-reproducibility](https://github.com/theislab/scgen-reproducibility) | 17 | 4 | 5 | 8 | | [theislab/cellrank_reproducibility](https://github.com/theislab/cellrank_reproducibility) | 14 | 2 | 0 | 8 | | [theislab/campa](https://github.com/theislab/campa) | 13 | 4 | 5 | 4 | | [theislab/DeepCollisionalCrossSection](https://github.com/theislab/DeepCollisionalCrossSection) | 13 | 5 | 1 | 6 | +| [theislab/multicpa](https://github.com/theislab/multicpa) | 13 | 2 | 1 | 2 | | [theislab/scanpy-in-R](https://github.com/theislab/scanpy-in-R) | 13 | 3 | 1 | 0 | -| [theislab/multicpa](https://github.com/theislab/multicpa) | 12 | 2 | 1 | 2 | | [theislab/multigrate](https://github.com/theislab/multigrate) | 12 | 3 | 7 | 3 | +| [theislab/scPoli_reproduce](https://github.com/theislab/scPoli_reproduce) | 12 | 3 | 1 | 4 | | [theislab/MetaMap](https://github.com/theislab/MetaMap) | 11 | 7 | 0 | 8 | -| [theislab/scPoli_reproduce](https://github.com/theislab/scPoli_reproduce) | 11 | 3 | 1 | 4 | | [theislab/diffxpy_tutorials](https://github.com/theislab/diffxpy_tutorials) | 10 | 8 | 4 | 2 | | [theislab/GWAS-scRNAseq-Integration](https://github.com/theislab/GWAS-scRNAseq-Integration) | 10 | 5 | 0 | 12 | | [theislab/ncem_tutorials](https://github.com/theislab/ncem_tutorials) | 10 | 4 | 5 | 0 | @@ -119,7 +121,6 @@ GitHub Dashboard | [theislab/2020_Mayr](https://github.com/theislab/2020_Mayr) | 6 | 6 | 0 | 8 | | [theislab/disent](https://github.com/theislab/disent) | 6 | 3 | 0 | 0 | | [theislab/intercode](https://github.com/theislab/intercode) | 6 | 3 | 1 | 1 | -| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 4 | 2 | | [theislab/scatac_poisson_reproducibility](https://github.com/theislab/scatac_poisson_reproducibility) | 6 | 3 | 0 | 0 | | [theislab/sfaira_tutorials](https://github.com/theislab/sfaira_tutorials) | 6 | 4 | 3 | 2 | | [theislab/trVAE_reproducibility](https://github.com/theislab/trVAE_reproducibility) | 6 | 3 | 2 | 5 | @@ -161,6 +162,7 @@ GitHub Dashboard | [theislab/moscot_benchmarks](https://github.com/theislab/moscot_benchmarks) | 2 | 2 | 1 | 0 | | [theislab/multigrate_reproducibility](https://github.com/theislab/multigrate_reproducibility) | 2 | 1 | 0 | 0 | | [theislab/scanpy_squidpy_demo_2021](https://github.com/theislab/scanpy_squidpy_demo_2021) | 2 | 4 | 0 | 1 | +| [theislab/scPoli_legacy](https://github.com/theislab/scPoli_legacy) | 2 | 5 | 0 | 0 | | [theislab/spatial_atlas_ssl](https://github.com/theislab/spatial_atlas_ssl) | 2 | 2 | 0 | 0 | | [theislab/svaeligr](https://github.com/theislab/svaeligr) | 2 | 3 | 0 | 0 | | [theislab/2021_PRMT7_regulates_Monocyte_Extravasation](https://github.com/theislab/2021_PRMT7_regulates_Monocyte_Extravasation) | 1 | 4 | 0 | 2 | @@ -176,7 +178,6 @@ GitHub Dashboard | [theislab/interaction-tools](https://github.com/theislab/interaction-tools) | 1 | 4 | 0 | 0 | | [theislab/moscot-framework_reproducibility](https://github.com/theislab/moscot-framework_reproducibility) | 1 | 2 | 1 | 0 | | [theislab/pertpy-datasets](https://github.com/theislab/pertpy-datasets) | 1 | 3 | 0 | 1 | -| [theislab/scPoli_legacy](https://github.com/theislab/scPoli_legacy) | 1 | 5 | 0 | 0 | | [theislab/sc_mae](https://github.com/theislab/sc_mae) | 1 | 2 | 0 | 0 | | [theislab/tissue_reproducibility](https://github.com/theislab/tissue_reproducibility) | 1 | 3 | 0 | 0 | | [theislab/unbalanced_monge_maps_single_cell](https://github.com/theislab/unbalanced_monge_maps_single_cell) | 1 | 1 | 0 | 0 | diff --git a/index.html b/index.html index db853bd..3bb3d61 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

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- - - - - - - - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + + + + + + + + @@ -1361,293 +1376,286 @@

Repos without Github Actions

- - - - - - - - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + diff --git a/repos.csv b/repos.csv index 00dd6aa..6f6060b 100644 --- a/repos.csv +++ b/repos.csv @@ -50,7 +50,7 @@ theislab,cellrank,theislab/cellrank,305,8,17,38,FALSE,https://github.com/theisla * Removed 'renamed_arg' * linting",[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8601715542) -theislab,cellrank,theislab/cellrank,305,8,17,38,FALSE,https://github.com/theislab/cellrank,305,6074913214f087301dd49bd9ef581c20ec56e759,Fix failing test,[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8871435139) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8871494371) +theislab,cellrank,theislab/cellrank,305,8,17,38,FALSE,https://github.com/theislab/cellrank,305,6074913214f087301dd49bd9ef581c20ec56e759,Fix failing test,[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8962180577) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/8962240926) theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,4,1,0,0,FALSE,https://github.com/theislab/cellrank2_reproducibility,4,f5c767a08bd0db4b58036afaffc91d0a649c90a5,"Add initial state identification (#59) * Add `embryoid_body/initial_state.ipynb` @@ -71,7 +71,7 @@ theislab,consensus-clustering-evaluation,theislab/consensus-clustering-evaluatio theislab,countae,theislab/countae,1,4,0,0,FALSE,https://github.com/theislab/countae,1,NA,NA,NA theislab,covid-perturbation,theislab/covid-perturbation,4,3,0,0,FALSE,https://github.com/theislab/covid-perturbation,4,NA,NA,NA theislab,covid_macrophages_integration,theislab/covid_macrophages_integration,2,5,0,4,FALSE,https://github.com/theislab/covid_macrophages_integration,2,NA,NA,NA -theislab,cpa,theislab/cpa,74,4,15,15,FALSE,https://github.com/theislab/cpa,74,NA,NA,NA +theislab,cpa,theislab/cpa,74,4,14,15,FALSE,https://github.com/theislab/cpa,74,NA,NA,NA theislab,cpa-reproducibility,theislab/cpa-reproducibility,7,2,1,1,FALSE,https://github.com/theislab/cpa-reproducibility,7,NA,NA,NA theislab,cross_system_integration,theislab/cross_system_integration,9,2,10,1,FALSE,https://github.com/theislab/cross_system_integration,9,NA,NA,NA theislab,dali,theislab/dali,0,7,0,1,FALSE,https://github.com/theislab/dali,0,NA,NA,NA @@ -82,13 +82,35 @@ theislab,diffxpy,theislab/diffxpy,174,6,107,23,FALSE,https://github.com/theislab theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA theislab,disent,theislab/disent,6,3,0,0,FALSE,https://github.com/theislab/disent,6,NA,NA,NA theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA -theislab,ehrapy,theislab/ehrapy,118,5,33,14,FALSE,https://github.com/theislab/ehrapy,118,27d854b4ec26b032ddf611cd7b6cf21dd38de253,"Version 0.7.0 +theislab,ehrapy,theislab/ehrapy,118,5,32,14,FALSE,https://github.com/theislab/ehrapy,118,18a37794965822bf9dc93a2f481a57578cd565a2,"Use __all__ (#715) + +* Use __all__ + +Signed-off-by: zethson + +* Fix some tests + +Signed-off-by: zethson + +* fix tests - remove fig.tight_layout + +* [pre-commit.ci] auto fixes from pre-commit.com hooks + +for more information, see https://pre-commit.ci + +* add new fig, missed before + +--------- + +Signed-off-by: zethson +Co-authored-by: eroell +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8965688924) +theislab,ehrapy,theislab/ehrapy,118,5,32,14,FALSE,https://github.com/theislab/ehrapy,118,27d854b4ec26b032ddf611cd7b6cf21dd38de253,"Version 0.7.0 Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8390347476) -theislab,ehrapy,theislab/ehrapy,118,5,33,14,FALSE,https://github.com/theislab/ehrapy,118,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows +theislab,ehrapy,theislab/ehrapy,118,5,32,14,FALSE,https://github.com/theislab/ehrapy,118,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) -theislab,ehrapy,theislab/ehrapy,118,5,33,14,FALSE,https://github.com/theislab/ehrapy,118,b25f2d3a60405b7b9f5a39381cf1ab7a90f77842,Encoded dtype to float32 instead of np.number (#714),[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8957501874) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8957501879) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8957501872) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8957501870) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/8957501880) theislab,ehrapy-cli,theislab/ehrapy-cli,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-cli,1,NA,NA,NA theislab,ehrapy-datasets,theislab/ehrapy-datasets,5,2,0,2,FALSE,https://github.com/theislab/ehrapy-datasets,5,e441a5d0912396064360799f10de973b377ba6a5,"Merge pull request #23 from theislab/diabetes-update @@ -111,7 +133,7 @@ Automated template update from cookiecutter-scverse",[![](https://github.com/the theislab,geome,theislab/geome,15,3,0,4,FALSE,https://github.com/theislab/geome,15,991a31359e3d975a2cc02ec532c09d0f1a6e5811,"Merge pull request #47 from theislab/refactor Adding tests and interface improvements",[![](https://github.com/theislab/geome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/geome/actions/runs/8900509976) [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/8905593851) -theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,a801c8b0e36750967fb5127de0a07495b83cfa47,[status] 2024-05-04 12:11:37 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/8958035700) +theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,bbb169c0aa05cd8868fdebad4dcdb1a78a89b3c5,[status] 2024-05-05 12:12:37 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/8968708908) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,graphcompass,theislab/graphcompass,15,2,0,0,FALSE,https://github.com/theislab/graphcompass,15,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,8,3,4,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA @@ -140,17 +162,38 @@ theislab,jump-cpg0016-segmentation,theislab/jump-cpg0016-segmentation,5,1,0,0,FA theislab,kBET,theislab/kBET,146,8,8,23,FALSE,https://github.com/theislab/kBET,146,NA,NA,NA theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/kbranches,5,NA,NA,NA theislab,masterpraktikum_ssl_segmentation,theislab/masterpraktikum_ssl_segmentation,0,3,1,1,FALSE,https://github.com/theislab/masterpraktikum_ssl_segmentation,0,NA,NA,NA +theislab,moscot,theislab/moscot,94,3,40,6,FALSE,https://github.com/theislab/moscot,94,389e008e56335ded77d507f0476b936e66344bf8,"Fixing ottjax 0.4.6 Errors (#688) + +* fix + +* [pre-commit.ci] auto fixes from pre-commit.com hooks + +for more information, see https://pre-commit.ci + +* recreate solution files with new ottjax version so it doesn't fail + +* see https://github.com/theislab/moscot/issues/678 + +* skip failing test + +* skip other tests https://github.com/theislab/moscot/issues/678 + +--------- + +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/8962188905) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/8962144965) theislab,moscot,theislab/moscot,94,3,40,6,FALSE,https://github.com/theislab/moscot,94,6ea9a1612b829aaa4a1c192210e340a9c08d4ac6,"fix bug in quad problem marginals (#666) Co-authored-by: Dominik Klein ",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/8263290173) theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,1,2,1,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,1,NA,NA,NA theislab,moscot_benchmarks,theislab/moscot_benchmarks,2,2,1,0,FALSE,https://github.com/theislab/moscot_benchmarks,2,NA,NA,NA theislab,moscot_not,theislab/moscot_not,3,2,8,1,FALSE,https://github.com/theislab/moscot_not,3,NA,NA,NA -theislab,moscot_notebooks,theislab/moscot_notebooks,6,1,4,2,FALSE,https://github.com/theislab/moscot_notebooks,6,NA,NA,NA +theislab,moscot_notebooks,theislab/moscot_notebooks,6,1,4,2,FALSE,https://github.com/theislab/moscot_notebooks,6,bc71edf71be1ef2fd8a52d44414ece68f98e12b4,"Merge pull request #69 from theislab/revert-68-add/callback_ex + +Revert ""Passing callbacks example""",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/8962213087) theislab,moslin,theislab/moslin,9,1,0,1,FALSE,https://github.com/theislab/moslin,9,NA,NA,NA theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,7,2,0,3,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,7,NA,NA,NA theislab,mubind,theislab/mubind,20,3,30,0,FALSE,https://github.com/theislab/mubind,20,NA,NA,NA -theislab,multicpa,theislab/multicpa,12,2,1,2,FALSE,https://github.com/theislab/multicpa,12,NA,NA,NA +theislab,multicpa,theislab/multicpa,13,2,1,2,FALSE,https://github.com/theislab/multicpa,13,NA,NA,NA theislab,multicpa-reproducibility,theislab/multicpa-reproducibility,0,2,0,0,FALSE,https://github.com/theislab/multicpa-reproducibility,0,NA,NA,NA theislab,multigrate,theislab/multigrate,12,3,7,3,FALSE,https://github.com/theislab/multigrate,12,NA,NA,NA theislab,multigrate_reproducibility,theislab/multigrate_reproducibility,2,1,0,0,FALSE,https://github.com/theislab/multigrate_reproducibility,2,NA,NA,NA @@ -163,7 +206,7 @@ theislab,ncem,theislab/ncem,97,6,26,13,FALSE,https://github.com/theislab/ncem,97 theislab,ncem_benchmarks,theislab/ncem_benchmarks,8,4,4,2,FALSE,https://github.com/theislab/ncem_benchmarks,8,NA,NA,NA theislab,ncem_tutorials,theislab/ncem_tutorials,10,4,5,0,FALSE,https://github.com/theislab/ncem_tutorials,10,NA,NA,NA theislab,neural_organoid_atlas,theislab/neural_organoid_atlas,9,4,2,1,FALSE,https://github.com/theislab/neural_organoid_atlas,9,NA,NA,NA -theislab,nicheformer,theislab/nicheformer,23,2,3,2,FALSE,https://github.com/theislab/nicheformer,23,NA,NA,NA +theislab,nicheformer,theislab/nicheformer,23,2,2,2,FALSE,https://github.com/theislab/nicheformer,23,NA,NA,NA theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimulation,0,3,0,1,FALSE,https://github.com/theislab/organoid_dexamethason_stimulation,0,NA,NA,NA theislab,paga,theislab/paga,187,10,22,32,FALSE,https://github.com/theislab/paga,187,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,7,0,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA @@ -175,21 +218,19 @@ Signed-off-by: zethson ",[![](https://github.com/theisl theislab,pertpy,theislab/pertpy,81,4,24,16,FALSE,https://github.com/theislab/pertpy,81,be4cce6b9d50f19ef5581bfb2aa1c3fb89e2ff4d,"submodule Signed-off-by: zethson ",[![](https://github.com/theislab/pertpy/workflows/Release/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8679592172) -theislab,pertpy,theislab/pertpy,81,4,24,16,FALSE,https://github.com/theislab/pertpy,81,df4b8abf12c85ab17249ab0c4458c29fd3b6c73b,"[pre-commit.ci] pre-commit autoupdate (#585) +theislab,pertpy,theislab/pertpy,81,4,24,16,FALSE,https://github.com/theislab/pertpy,81,d0c6a35d2fc16752dde1da1e8c4f02e359737879,"Use __all__ (#588) -* [pre-commit.ci] pre-commit autoupdate +* Start 0.8.0 -updates: -- [github.com/astral-sh/ruff-pre-commit: v0.3.5 → v0.4.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.5...v0.4.2) -- [github.com/pre-commit/mirrors-mypy: v1.9.0 → v1.10.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.9.0...v1.10.0) +Signed-off-by: zethson -* [pre-commit.ci] auto fixes from pre-commit.com hooks +* Use __all__ -for more information, see https://pre-commit.ci +Signed-off-by: zethson --------- -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8922981910) [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8922981904) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8922981905) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8922981912) +Signed-off-by: zethson ",[![](https://github.com/theislab/pertpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8966061587) [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8966061584) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8966061582) [![](https://github.com/theislab/pertpy/workflows/Test/badge.svg)](https://github.com/theislab/pertpy/actions/runs/8966061583) theislab,pertpy-datasets,theislab/pertpy-datasets,1,3,0,1,FALSE,https://github.com/theislab/pertpy-datasets,1,NA,NA,NA theislab,pertpy-tutorials,theislab/pertpy-tutorials,4,4,1,7,FALSE,https://github.com/theislab/pertpy-tutorials,4,NA,NA,NA theislab,perturbation-metrics,theislab/perturbation-metrics,4,2,1,0,FALSE,https://github.com/theislab/perturbation-metrics,4,NA,NA,NA @@ -202,8 +243,8 @@ theislab,scAnalysisTutorial,theislab/scAnalysisTutorial,10,3,0,3,FALSE,https://g theislab,scArches-reproducibility,theislab/scArches-reproducibility,31,5,5,0,FALSE,https://github.com/theislab/scArches-reproducibility,31,NA,NA,NA theislab,scCODA,theislab/scCODA,134,9,8,23,FALSE,https://github.com/theislab/scCODA,134,NA,NA,NA theislab,scCODA_reproducibility,theislab/scCODA_reproducibility,7,5,0,1,FALSE,https://github.com/theislab/scCODA_reproducibility,7,NA,NA,NA -theislab,scPoli_legacy,theislab/scPoli_legacy,1,5,0,0,FALSE,https://github.com/theislab/scPoli_legacy,1,NA,NA,NA -theislab,scPoli_reproduce,theislab/scPoli_reproduce,11,3,1,4,FALSE,https://github.com/theislab/scPoli_reproduce,11,NA,NA,NA +theislab,scPoli_legacy,theislab/scPoli_legacy,2,5,0,0,FALSE,https://github.com/theislab/scPoli_legacy,2,NA,NA,NA +theislab,scPoli_reproduce,theislab/scPoli_reproduce,12,3,1,4,FALSE,https://github.com/theislab/scPoli_reproduce,12,NA,NA,NA theislab,scTab,theislab/scTab,27,2,0,3,FALSE,https://github.com/theislab/scTab,27,NA,NA,NA theislab,sc_analysis_template,theislab/sc_analysis_template,3,3,0,0,FALSE,https://github.com/theislab/sc_analysis_template,3,NA,NA,NA theislab,sc_ketamine_analysis,theislab/sc_ketamine_analysis,0,4,0,0,FALSE,https://github.com/theislab/sc_ketamine_analysis,0,NA,NA,NA @@ -222,7 +263,7 @@ theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://gi theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,6,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,6,NA,NA,NA theislab,scgen,theislab/scgen,247,9,19,52,FALSE,https://github.com/theislab/scgen,247,d79e1f04233c30f9a4eb5b8d57718127909807d7,Merge pull request #87 from theislab/batch_corr_labels,[![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) theislab,scgen-reproducibility,theislab/scgen-reproducibility,17,4,5,8,FALSE,https://github.com/theislab/scgen-reproducibility,17,NA,NA,NA -theislab,scib,theislab/scib,275,14,36,57,FALSE,https://github.com/theislab/scib,NA,9c5a936b0ecf21ba09b1bc803712a42c2a942fbc,"Use precomputed clustering (#406) +theislab,scib,theislab/scib,276,14,36,57,FALSE,https://github.com/theislab/scib,NA,9c5a936b0ecf21ba09b1bc803712a42c2a942fbc,"Use precomputed clustering (#406) * cluster only when clustering key does not exist or if forced @@ -264,7 +305,7 @@ theislab,scvelo,theislab/scvelo,392,12,57,101,FALSE,https://github.com/theislab/ Co-authored-by: Philipp Weiler ",[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8665253017) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8665253018) theislab,scvelo_notebooks,theislab/scvelo_notebooks,26,2,2,13,FALSE,https://github.com/theislab/scvelo_notebooks,26,NA,NA,NA -theislab,sfaira,theislab/sfaira,133,8,166,13,FALSE,https://github.com/theislab/sfaira,133,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/8954152108) +theislab,sfaira,theislab/sfaira,133,8,166,13,FALSE,https://github.com/theislab/sfaira,133,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/8962116124) theislab,sfaira,theislab/sfaira,133,8,166,13,FALSE,https://github.com/theislab/sfaira,133,5fcf932c44613e6bf4063ef3075ad6062bf5d9a1,round restored counts in some affected datasets,[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) theislab,sfaira,theislab/sfaira,133,8,166,13,FALSE,https://github.com/theislab/sfaira,133,ceb14c946f699c38d18a32192b76d4639caf845e,fix download links,[![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) theislab,sfaira-portal,theislab/sfaira-portal,0,4,2,0,FALSE,https://github.com/theislab/sfaira-portal,0,NA,NA,NA @@ -404,7 +445,7 @@ theislab,single-cell-tutorial,theislab/single-cell-tutorial,1300,30,21,437,FALSE theislab,singlecell_proteomics,theislab/singlecell_proteomics,3,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,3,NA,NA,NA theislab,spapros,theislab/spapros,21,3,7,5,FALSE,https://github.com/theislab/spapros,21,e8a37c9e78039920a0792fc04f426ab062dbbf88,"Merge pull request #321 from theislab/patch_precommit -pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/8954702975) +pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/8962740931) theislab,spapros,theislab/spapros,21,3,7,5,FALSE,https://github.com/theislab/spapros,21,f256c72f53320f6f91b93a6537e482f1407ee86e,"[DEPENDABOT]: Bump nbconvert from 6.5.4 to 7.16.4 in /docs Bumps [nbconvert](https://github.com/jupyter/nbconvert) from 6.5.4 to 7.16.4. @@ -440,4 +481,4 @@ theislab,transcription_factor_activity,theislab/transcription_factor_activity,1, theislab,trvaep,theislab/trvaep,9,3,0,4,FALSE,https://github.com/theislab/trvaep,9,NA,NA,NA theislab,unbalanced_monge_maps_single_cell,theislab/unbalanced_monge_maps_single_cell,1,1,0,0,FALSE,https://github.com/theislab/unbalanced_monge_maps_single_cell,1,NA,NA,NA theislab,zebrafish_bipolarity,theislab/zebrafish_bipolarity,1,4,0,1,FALSE,https://github.com/theislab/zebrafish_bipolarity,1,NA,NA,NA -theislab,zellkonverter,theislab/zellkonverter,132,5,23,26,FALSE,https://github.com/theislab/zellkonverter,132,21fd89b442ee60ef8ddb843c661d4236100327d2,Prepare NEWS for Bioconductor 3.19 release,[![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/8798884374) +theislab,zellkonverter,theislab/zellkonverter,132,5,23,26,FALSE,https://github.com/theislab/zellkonverter,132,7b118653a471330b3734dcfee60c3537352ecb8d,Bioconductor 3.20 devel,[![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/8968608190)
8 17 38 - + 607491
theislab/scib275276 14 36 57 8 166 13 55bcbb
5 23 2621fd897b1186
theislab/ehrapy 118 53332 1427d85418a377
theislab/ehrapy 118 53332 1484d33c27d854
theislab/ehrapy 118 53332 14 - - - -b25f2d84d33c
theislab/anndata2ri 3 40 6 +389e00
theislab/moscot943406 6ea9a1
theislab/pertpy 81 4 54b7f3
theislab/pertpy 81 4 be4cce
theislab/pertpy 81 4 24 16 - - -df4b8a + + +d0c6a3
theislab/destiny 67 5 300eb2
theislab/batchglm 26 3 b893fd
theislab/hadge 22 3 1ed105
theislab/hadge 22 3 6441e6
theislab/spapros 21 3 7 5 - e8a37c
theislab/spapros 21 3 f256c7
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theislab/moscot_notebooks6142bc71ed
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theislab/nicheformer 23 232 2
6
theislab/scanpy-in-Rtheislab/multicpa 1332 102
theislab/multicpa122theislab/scanpy-in-R133 120
theislab/multigrate 3
theislab/scPoli_reproduce12314
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theislab/moscot_notebooks6142
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theislab/2018_Angelidis 5 4 1 6
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theislab/scanpy-demo-czbiohub 5 5 0 5
theislab/2022_Tritschler_pancreas_cross_species 4 3 0 1
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theislab/covid-perturbation 4 3 0 0
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theislab/scPoli_legacy2500
theislab/spatial_atlas_ssl 2 1
theislab/scPoli_legacy1500
theislab/sc_mae 1 2 0 0
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