diff --git a/README.md b/README.md index 7779a56..7840c7b 100644 --- a/README.md +++ b/README.md @@ -2,47 +2,48 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2023-10-15 12:14:23 UTC +2023-10-16 12:06:02 UTC -| Repo | Stars | Subscribers | Issues | Forks | Status | Commit | -|:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 495 | 15 | 44 | 98 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6170954090) | a2f3eb | -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 495 | 15 | 44 | 98 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 257 | 8 | 10 | 34 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) | 1287de | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 257 | 8 | 10 | 34 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6450832910) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6450878339) | c3ced6 | -| [theislab/scib](https://github.com/theislab/scib) | 238 | 17 | 27 | 48 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) | ed3e28 | -| [theislab/scgen](https://github.com/theislab/scgen) | 219 | 10 | 18 | 48 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 130 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665642) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665653) [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665648) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665649) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665641) | 55e110 | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 130 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6520707556) | c50240 | -| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 105 | 6 | 15 | 21 | [![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/6381921739) | 617f7f | -| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 99 | 6 | 15 | 14 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/6461737415) | 093ef0 | -| [theislab/ncem](https://github.com/theislab/ncem) | 92 | 6 | 23 | 11 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | -| [theislab/ncem](https://github.com/theislab/ncem) | 92 | 6 | 23 | 11 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6119220837) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6119220836) | 4137a3 | -| [theislab/moscot](https://github.com/theislab/moscot) | 67 | 4 | 36 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/6456571831) | b23360 | -| [theislab/destiny](https://github.com/theislab/destiny) | 64 | 5 | 29 | 11 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/3288756982) | 8f083f | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 54 | 5 | 38 | 8 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 54 | 5 | 38 | 8 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6272566576) | ec54de | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 51 | 5 | 28 | 10 | [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) | \” title=“Revert”Deleted JaxscgenPlot”“\>404835 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 51 | 5 | 28 | 10 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6485929201) | d8d2c5 | -| [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 40 | 7 | 14 | 25 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | -| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825767) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825761) | 11ffbb | -| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Labeler/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3209792663) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | -| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3213182368) | e78395 | -| [theislab/spapros](https://github.com/theislab/spapros) | 19 | 3 | 14 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6521158606) | c4c090 | -| [theislab/spapros](https://github.com/theislab/spapros) | 19 | 3 | 14 | 5 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/6303579093) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/6303579095) | d2f5c6 | -| [theislab/geome](https://github.com/theislab/geome) | 13 | 3 | 5 | 4 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | -| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 5 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/6461732304) | 8a5b9e | -| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 2 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6450846110) | 677784 | -| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 4 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/6450858251) | bbca9f | -| [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 4 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/4510904353) | cb7707 | -| [theislab/batch_correction_cellpainting](https://github.com/theislab/batch_correction_cellpainting) | 1 | 1 | 11 | 2 | [![](https://github.com/theislab/batch_correction_cellpainting/workflows/PR%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/6468244415) [![](https://github.com/theislab/batch_correction_cellpainting/workflows/Package%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/6468244416) | 4285a2 | -| [theislab/bindome](https://github.com/theislab/bindome) | 1 | 3 | 5 | 1 | [![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) | 3cb12b | -| [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 1 | 0 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369762) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369764) | 96c815 | -| [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 0 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6523902198) | dd3f43 | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/6140914377) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/6140914379) | 1f47f4 | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | +| Repo | Stars | Subscribers | Issues | Forks | Status | Commit | +|:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 495 | 15 | 41 | 98 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290209) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290212) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290229) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290234) | 64cdab | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 495 | 15 | 41 | 98 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 257 | 8 | 10 | 34 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) | 1287de | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 257 | 8 | 10 | 34 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6527349932) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6527398967) | c3ced6 | +| [theislab/scib](https://github.com/theislab/scib) | 238 | 17 | 27 | 48 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) | ed3e28 | +| [theislab/scgen](https://github.com/theislab/scgen) | 219 | 10 | 18 | 48 | [![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484) | d79e1f | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 130 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665642) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665653) [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665648) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665649) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665641) | 55e110 | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 130 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6527299042) | c50240 | +| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 105 | 6 | 15 | 21 | [![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/6532217835) | 253179 | +| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 99 | 6 | 14 | 14 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/6461737415) | 093ef0 | +| [theislab/ncem](https://github.com/theislab/ncem) | 92 | 6 | 23 | 11 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | +| [theislab/ncem](https://github.com/theislab/ncem) | 92 | 6 | 23 | 11 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6119220837) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6119220836) | 4137a3 | +| [theislab/moscot](https://github.com/theislab/moscot) | 67 | 4 | 36 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/6456571831) | b23360 | +| [theislab/moscot](https://github.com/theislab/moscot) | 67 | 4 | 36 | 6 | [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/6527357160) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/6527321128) | c9ebbc | +| [theislab/destiny](https://github.com/theislab/destiny) | 64 | 5 | 29 | 11 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/3288756982) | 8f083f | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 54 | 5 | 38 | 8 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 54 | 5 | 38 | 8 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6272566576) | ec54de | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 51 | 5 | 27 | 10 | [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) | \” title=“Revert”Deleted JaxscgenPlot”“\>404835 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 51 | 5 | 27 | 10 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6530864547) | 67ee21 | +| [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 40 | 7 | 14 | 25 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | +| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825767) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825761) | 11ffbb | +| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Labeler/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3209792663) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | +| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3213182368) | e78395 | +| [theislab/spapros](https://github.com/theislab/spapros) | 19 | 3 | 14 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6527838052) | c4c090 | +| [theislab/spapros](https://github.com/theislab/spapros) | 19 | 3 | 14 | 5 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/6303579093) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/6303579095) | d2f5c6 | +| [theislab/geome](https://github.com/theislab/geome) | 13 | 3 | 5 | 4 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | +| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 5 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/6461732304) | 8a5b9e | +| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 2 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6527364682) | 677784 | +| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 6 | 1 | 4 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/6527376440) | bbca9f | +| [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 4 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/4510904353) | cb7707 | +| [theislab/batch_correction_cellpainting](https://github.com/theislab/batch_correction_cellpainting) | 1 | 1 | 11 | 2 | [![](https://github.com/theislab/batch_correction_cellpainting/workflows/PR%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/6468244415) [![](https://github.com/theislab/batch_correction_cellpainting/workflows/Package%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/6468244416) | 4285a2 | +| [theislab/bindome](https://github.com/theislab/bindome) | 1 | 3 | 5 | 1 | [![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) | 3cb12b | +| [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 1 | 0 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369762) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369764) | 96c815 | +| [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 0 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6533252962) | dd5f54 | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/6140914377) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/6140914379) | 1f47f4 | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | ## Repos without Github Actions @@ -56,7 +57,7 @@ GitHub Dashboard | [theislab/paga](https://github.com/theislab/paga) | 169 | 10 | 21 | 29 | | [theislab/kBET](https://github.com/theislab/kBET) | 137 | 9 | 8 | 23 | | [theislab/scCODA](https://github.com/theislab/scCODA) | 120 | 9 | 9 | 21 | -| [theislab/sc-pert](https://github.com/theislab/sc-pert) | 108 | 6 | 5 | 8 | +| [theislab/sc-pert](https://github.com/theislab/sc-pert) | 109 | 6 | 5 | 9 | | [theislab/chemCPA](https://github.com/theislab/chemCPA) | 70 | 5 | 8 | 15 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 51 | 6 | 6 | 8 | | [theislab/trVAE](https://github.com/theislab/trVAE) | 51 | 7 | 2 | 8 | @@ -160,6 +161,7 @@ GitHub Dashboard | [theislab/moscot_benchmarks](https://github.com/theislab/moscot_benchmarks) | 1 | 2 | 1 | 0 | | [theislab/pertpy-datasets](https://github.com/theislab/pertpy-datasets) | 1 | 3 | 0 | 1 | | [theislab/scPoli_legacy](https://github.com/theislab/scPoli_legacy) | 1 | 5 | 0 | 0 | +| [theislab/svaeligr](https://github.com/theislab/svaeligr) | 1 | 2 | 0 | 0 | | [theislab/tissue_reproducibility](https://github.com/theislab/tissue_reproducibility) | 1 | 3 | 0 | 0 | | [theislab/zebrafish_bipolarity](https://github.com/theislab/zebrafish_bipolarity) | 1 | 4 | 0 | 1 | | [theislab/2020_Inhibition_LTbetaR-signalling](https://github.com/theislab/2020_Inhibition_LTbetaR-signalling) | 0 | 4 | 0 | 3 | diff --git a/index.html b/index.html index bf35c16..7db7d33 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

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Repos without Github Actions

+ + + + + + + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + diff --git a/repos.csv b/repos.csv index fab32aa..a062ecb 100644 --- a/repos.csv +++ b/repos.csv @@ -25,7 +25,7 @@ theislab,MRGR_stress_analysis,theislab/MRGR_stress_analysis,0,3,0,0,FALSE,https: theislab,MetaMap,theislab/MetaMap,11,7,0,8,FALSE,https://github.com/theislab/MetaMap,11,NA,NA,NA theislab,MetaMap-web,theislab/MetaMap-web,0,4,2,0,FALSE,https://github.com/theislab/MetaMap-web,0,NA,NA,NA theislab,PathReg,theislab/PathReg,8,3,0,0,FALSE,https://github.com/theislab/PathReg,8,NA,NA,NA -theislab,anndata2ri,theislab/anndata2ri,99,6,15,14,FALSE,https://github.com/theislab/anndata2ri,99,093ef078a1e08f6b7b029be3dad273ab59e9d275,"[pre-commit.ci] pre-commit autoupdate (#137) +theislab,anndata2ri,theislab/anndata2ri,99,6,14,14,FALSE,https://github.com/theislab/anndata2ri,99,093ef078a1e08f6b7b029be3dad273ab59e9d275,"[pre-commit.ci] pre-commit autoupdate (#137) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/6461737415) theislab,archmap_admin,theislab/archmap_admin,0,3,0,0,FALSE,https://github.com/theislab/archmap_admin,0,NA,NA,NA @@ -67,12 +67,12 @@ theislab,cellrank,theislab/cellrank,257,8,10,34,FALSE,https://github.com/theisla * Add test -* Add `zarr` to test reqs",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6450832910) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6450878339) +* Add `zarr` to test reqs",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6527349932) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6527398967) theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,1,0,0,0,FALSE,https://github.com/theislab/cellrank2_reproducibility,1,96c815f78ecbb75d9dc12f0ee995851acf314add,"Add `lint.yml` (#40) Adds CI to check linting on push to `main` or when opeing a PR to merge into `main`.",[![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369762) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369764) -theislab,cellrank_notebooks,theislab/cellrank_notebooks,6,4,2,5,FALSE,https://github.com/theislab/cellrank_notebooks,6,6777840bcc146924d208c0b9b02677da63620805,[ci skip] Fix pepy badge,[![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6450846110) +theislab,cellrank_notebooks,theislab/cellrank_notebooks,6,4,2,5,FALSE,https://github.com/theislab/cellrank_notebooks,6,6777840bcc146924d208c0b9b02677da63620805,[ci skip] Fix pepy badge,[![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6527364682) theislab,cellrank_reproducibility,theislab/cellrank_reproducibility,13,2,0,7,FALSE,https://github.com/theislab/cellrank_reproducibility,13,NA,NA,NA theislab,cellrank_reproducibility_preprint,theislab/cellrank_reproducibility_preprint,4,2,0,0,FALSE,https://github.com/theislab/cellrank_reproducibility_preprint,4,NA,NA,NA theislab,chemCPA,theislab/chemCPA,70,5,8,15,FALSE,https://github.com/theislab/chemCPA,70,NA,NA,NA @@ -115,7 +115,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,7,4,0,1,FALSE,http theislab,geome,theislab/geome,13,3,5,4,FALSE,https://github.com/theislab/geome,13,5bf0cd07b2ea7fa224a37f69232542a9e686c5bf,"Merge pull request #31 from theislab/template-update Automated template update from cookiecutter-scverse",[![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) -theislab,gh-dashboard,theislab/gh-dashboard,0,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,0,dd3f43fa563a2889b25b5cdf368306bafc726bef,[status] 2023-10-14 12:09:24 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6523902198) +theislab,gh-dashboard,theislab/gh-dashboard,0,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,0,dd5f54a4252141cc9add08e5391a31f7574d4386,[status] 2023-10-15 12:15:54 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6533252962) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,greatpy,theislab/greatpy,8,3,3,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA theislab,gut_lineage,theislab/gut_lineage,2,3,0,3,FALSE,https://github.com/theislab/gut_lineage,2,NA,NA,NA @@ -157,12 +157,15 @@ theislab,moscot,theislab/moscot,67,4,36,6,FALSE,https://github.com/theislab/mosc Co-authored-by: Arina Danilina Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/6456571831) +theislab,moscot,theislab/moscot,67,4,36,6,FALSE,https://github.com/theislab/moscot,67,c9ebbcab4d572494a514cc092d4f321c0c5ae4ff,"Merge pull request #617 from theislab/pre-commit-ci-update-config + +[pre-commit.ci] pre-commit autoupdate",[![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/6527357160) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/6527321128) theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,1,2,0,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,1,NA,NA,NA theislab,moscot_benchmarks,theislab/moscot_benchmarks,1,2,1,0,FALSE,https://github.com/theislab/moscot_benchmarks,1,NA,NA,NA theislab,moscot_not,theislab/moscot_not,2,2,8,0,FALSE,https://github.com/theislab/moscot_not,2,NA,NA,NA theislab,moscot_notebooks,theislab/moscot_notebooks,6,1,4,2,FALSE,https://github.com/theislab/moscot_notebooks,6,bbca9f2b0243c4349e0cdd98c78af083251cfe9c,"Merge pull request #58 from theislab/fix/func_calls -small fixes for warnings and function calls",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/6450858251) +small fixes for warnings and function calls",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/6527376440) theislab,moslin,theislab/moslin,9,1,0,1,FALSE,https://github.com/theislab/moslin,9,NA,NA,NA theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,5,2,0,2,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,5,NA,NA,NA theislab,mubind,theislab/mubind,18,2,30,0,FALSE,https://github.com/theislab/mubind,18,NA,NA,NA @@ -183,20 +186,35 @@ theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimul theislab,paga,theislab/paga,169,10,21,29,FALSE,https://github.com/theislab/paga,169,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,7,0,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,3,3,0,5,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,3,NA,NA,NA -theislab,pertpy,theislab/pertpy,51,5,28,10,FALSE,https://github.com/theislab/pertpy,51,404835c82f9a3d943b85973c10130303d090839d,"Revert ""Deleted JaxscgenPlot"" +theislab,pertpy,theislab/pertpy,51,5,27,10,FALSE,https://github.com/theislab/pertpy,51,404835c82f9a3d943b85973c10130303d090839d,"Revert ""Deleted JaxscgenPlot"" This reverts commit 161fc137c5a23320a5799a22cd4d7212b550bca9.",[![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) -theislab,pertpy,theislab/pertpy,51,5,28,10,FALSE,https://github.com/theislab/pertpy,51,d8d2c58e0747100e6a724f14aa5ce30349b4c038,"Speed up tests by subsampling (#398) - -* Subsampling by 10% for sccoda, tasccoda, and cinemaot - -* [pre-commit.ci] auto fixes from pre-commit.com hooks - -for more information, see https://pre-commit.ci - ---------- +theislab,pertpy,theislab/pertpy,51,5,27,10,FALSE,https://github.com/theislab/pertpy,51,67ee210b838bc2d421d472256574b2f028621c22,"Documentation examples (#391) -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6485929201) +* Examples added for preprocessing._guide_rna + +* All examples added for mixscape + +* Scanpy preprocessing in docs examples removed + +* Most examples added for Augur and the Perturbation Space tools + +* Added all examples for Perturbation Space tools + +* Added all examples for Milo + +* Finished examples for Augur and Dialogue (also plotting) + +* Finished examples for scCODA, MetaCellLine and respective plots + +* Simplified examples for scCODA and tascCODA + +* Finalized examples for scCODA and tascCODA (also plotting) and dialogue + +--------- + +Co-authored-by: Lilly +Co-authored-by: Lukas Heumos ",[![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/6530864547) theislab,pertpy-datasets,theislab/pertpy-datasets,1,3,0,1,FALSE,https://github.com/theislab/pertpy-datasets,1,NA,NA,NA theislab,pertpy-tutorials,theislab/pertpy-tutorials,4,4,3,6,FALSE,https://github.com/theislab/pertpy-tutorials,4,NA,NA,NA theislab,perturbation-metrics,theislab/perturbation-metrics,0,2,0,0,FALSE,https://github.com/theislab/perturbation-metrics,0,NA,NA,NA @@ -204,7 +222,7 @@ theislab,pseudodynamics,theislab/pseudodynamics,40,7,0,6,FALSE,https://github.co theislab,reproducability_AutoGeneS,theislab/reproducability_AutoGeneS,0,3,0,0,FALSE,https://github.com/theislab/reproducability_AutoGeneS,0,NA,NA,NA theislab,reproducibility_AutoGeneS,theislab/reproducibility_AutoGeneS,0,3,0,0,FALSE,https://github.com/theislab/reproducibility_AutoGeneS,0,NA,NA,NA theislab,sc-best-practices-ce,theislab/sc-best-practices-ce,5,7,2,3,FALSE,https://github.com/theislab/sc-best-practices-ce,5,NA,NA,NA -theislab,sc-pert,theislab/sc-pert,108,6,5,8,FALSE,https://github.com/theislab/sc-pert,108,NA,NA,NA +theislab,sc-pert,theislab/sc-pert,109,6,5,9,FALSE,https://github.com/theislab/sc-pert,109,NA,NA,NA theislab,scAnalysisTutorial,theislab/scAnalysisTutorial,10,3,0,3,FALSE,https://github.com/theislab/scAnalysisTutorial,10,NA,NA,NA theislab,scArches-reproducibility,theislab/scArches-reproducibility,29,5,5,2,FALSE,https://github.com/theislab/scArches-reproducibility,29,NA,NA,NA theislab,scCODA,theislab/scCODA,120,9,9,21,FALSE,https://github.com/theislab/scCODA,120,NA,NA,NA @@ -239,51 +257,14 @@ Co-authored-by: David S. Fischer Co-authored-by: Leander <20015434+le-ander@users.noreply.github.com>",[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665642) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665653) [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665648) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665649) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6219665641) theislab,sfaira,theislab/sfaira,130,8,177,13,FALSE,https://github.com/theislab/sfaira,130,c50240a74530e614ab7681bf9c63b04cb815b361,"Merge pull request #589 from theislab/release -Release 0.3.12",[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6520707556) +Release 0.3.12",[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6527299042) theislab,sfaira-portal,theislab/sfaira-portal,0,4,2,0,FALSE,https://github.com/theislab/sfaira-portal,0,NA,NA,NA theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theislab/sfaira-site,0,NA,NA,NA theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,3,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA -theislab,single-cell-best-practices,theislab/single-cell-best-practices,495,15,44,98,FALSE,https://github.com/theislab/single-cell-best-practices,495,a2f3eb811135a9be1fd3b2eacb43ada9e73c5274,"Typos (#237) - -* first typo test commit - -* further typos - -* chapter 4 some typos - -* chapter 7 some typos - -* chapter 8 some typos - -* chapter 9 some typos - -* chapter 10 some typos - -* chapter 11 some typos - -* chapter 12 some typos - -* chapter 13 some typos - -* some typos in compositional analysis chapter - -* some typos in gsea - -* typos gsea pert domains neighborhood spatialvar - -* some typos spatial deconvolution - -* some typos in imputation, including corrected chapter numbering - -* Remove unfinished sentence - ---------- - -Co-authored-by: Eljas -Co-authored-by: zethson ",[![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6170954090) -theislab,single-cell-best-practices,theislab/single-cell-best-practices,495,15,44,98,FALSE,https://github.com/theislab/single-cell-best-practices,495,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,495,15,41,98,FALSE,https://github.com/theislab/single-cell-best-practices,495,64cdabb5a3a1cd5981adcfd19cbfa9c0dabb7560,Fix typo,[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290209) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290212) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290229) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6531290234) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,495,15,41,98,FALSE,https://github.com/theislab/single-cell-best-practices,495,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) * scATAC_pp @@ -401,7 +382,7 @@ theislab,single-cell-tutorial,theislab/single-cell-tutorial,1168,30,19,422,FALSE theislab,singlecell_proteomics,theislab/singlecell_proteomics,3,4,4,3,FALSE,https://github.com/theislab/singlecell_proteomics,3,NA,NA,NA theislab,spapros,theislab/spapros,19,3,14,5,FALSE,https://github.com/theislab/spapros,19,c4c0903758ecb1acd0e16c1d227e59e8be1e28de,"Merge pull request #288 from theislab/development -Mention python package in docs",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6521158606) +Mention python package in docs",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6527838052) theislab,spapros,theislab/spapros,19,3,14,5,FALSE,https://github.com/theislab/spapros,19,d2f5c628c6cff3ae8168650e1cbbca846d40824b,"[DEPENDABOT]: Bump actions/checkout from 3.0.2 to 4.1.0 Bumps [actions/checkout](https://github.com/actions/checkout) from 3.0.2 to 4.1.0. @@ -423,6 +404,7 @@ theislab,spapros_reproducibility,theislab/spapros_reproducibility,0,1,1,0,FALSE, theislab,spatial_scog_workshop_2022,theislab/spatial_scog_workshop_2022,41,9,0,24,FALSE,https://github.com/theislab/spatial_scog_workshop_2022,41,NA,NA,NA theislab,squidpy_reproducibility,theislab/squidpy_reproducibility,8,2,0,5,FALSE,https://github.com/theislab/squidpy_reproducibility,8,NA,NA,NA theislab,superexacttestpy,theislab/superexacttestpy,9,2,3,0,FALSE,https://github.com/theislab/superexacttestpy,9,NA,NA,NA +theislab,svaeligr,theislab/svaeligr,1,2,0,0,FALSE,https://github.com/theislab/svaeligr,1,NA,NA,NA theislab,tcellmatch,theislab/tcellmatch,36,9,3,7,FALSE,https://github.com/theislab/tcellmatch,36,NA,NA,NA theislab,theislab.github.io,theislab/theislab.github.io,7,2,9,0,FALSE,https://github.com/theislab/theislab.github.io,7,NA,NA,NA theislab,tissue,theislab/tissue,0,2,0,0,FALSE,https://github.com/theislab/tissue,0,NA,NA,NA @@ -433,5 +415,4 @@ theislab,trVAE_reproducibility,theislab/trVAE_reproducibility,6,3,2,4,FALSE,http theislab,transcription_factor_activity,theislab/transcription_factor_activity,1,1,5,1,FALSE,https://github.com/theislab/transcription_factor_activity,1,ced39f7274e8fb4cc5da8f29dd197a8061227d7e,Delete sync.yaml for noe,[![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) theislab,trvaep,theislab/trvaep,8,3,0,3,FALSE,https://github.com/theislab/trvaep,8,NA,NA,NA theislab,zebrafish_bipolarity,theislab/zebrafish_bipolarity,1,4,0,1,FALSE,https://github.com/theislab/zebrafish_bipolarity,1,NA,NA,NA -theislab,zellkonverter,theislab/zellkonverter,105,6,15,21,FALSE,https://github.com/theislab/zellkonverter,105,617f7f5a4275d2bb80d0aef629b9de36c60dbc6e," - nbclient -Update NEWS for release",[![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/6381921739) +theislab,zellkonverter,theislab/zellkonverter,105,6,15,21,FALSE,https://github.com/theislab/zellkonverter,105,253179e9d05a309f366dbc06148017886221623c,Add anndata v0.10.2 environment,[![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/6532217835)
theislab/single-cell-best-practices 495 154441 98a2f3eb + + +64cdab
theislab/single-cell-best-practices 495 154441 98 c06ca9 8 10 34 - + c3ced6
8 177 13 c50240
6 15 21617f7f253179
theislab/anndata2ri 99 61514 14 093ef0 b23360
theislab/moscot674366 +c9ebbc
theislab/destiny 64 5 8f083f
theislab/ehrapy 54 5 84d33c
theislab/ehrapy 54 5 ec54de
theislab/pertpy 51 52827 10 <a href=“https://github.com/theislab/pertpy/commit/404835c82f9a3d943b85973c10130303d090839d” title=“Revert”Deleted JaxscgenPlot”“>404835
theislab/pertpy 51 52827 10d8d2c567ee21
theislab/scib-pipeline 40 7 1180bc
theislab/batchglm 26 4 11ffbb
theislab/batchglm 26 4 b893fd
theislab/batchglm 26 4 e78395
theislab/spapros 19 3 14 5 - c4c090
theislab/spapros 19 3 d2f5c6
theislab/geome 13 3 5bf0cd
theislab/scanpydoc 12 6 8a5b9e
theislab/cellrank_notebooks 6 4 2 5 677784
theislab/moscot_notebooks 6 1 4 2 bbca9f
theislab/ehrapy-datasets 4 2 cb7707
theislab/batch_correction_cellpainting 1 1 4285a2
theislab/bindome 1 3 3cb12b
theislab/cellrank2_reproducibility 1 0 96c815
theislab/transcription_factor_activity 1 1 ced39f
theislab/gh-dashboard 0 2 0 0dd3f43dd5f54
theislab/idtrack 0 1 12aa73
theislab/idtrack 0 1 1f47f4
theislab/idtrack 0 1
theislab/sc-pert108109 6 589
theislab/chemCPA 0
theislab/svaeligr1200
theislab/tissue_reproducibility 1 3 0 0
theislab/zebrafish_bipolarity 1 4 0 1
theislab/2020_Inhibition_LTbetaR-signalling 0 4 0 3
theislab/2022_Bakhti_pancreas_Syt13 0 3 0 0
theislab/archmap_admin 0 3 0 0
theislab/astrocytes_reprogramming_analysis 0 5 0 0
theislab/atlas-feature-selection-benchmark 0 2 3 0
theislab/collideseq_reproducibility 0 2 0 0
theislab/consensus-clustering-evaluation 0 4 0 0
theislab/dali 0 7 0 1
theislab/edgepy 0 3 0 0
theislab/GoBI_single_cell 0 3 0 0
theislab/hadge-reproducibility 0 1 0 0
theislab/icml_cbw_2022_clcvae 0 2 0 0
theislab/ipsc_ipd_analysis 0 3 0 0
theislab/LungAgingAtlas 0 5 0 0
theislab/MetaMap-web 0 4 2 0
theislab/MRGR_stress_analysis 0 3 0 0
theislab/multicpa-reproducibility 0 2 0 0
theislab/organoid_dexamethason_stimulation 0 3 0 0
theislab/pancreas-targeted_pharmacology 0 7 0 2
theislab/perturbation-metrics 0 2 0 0
theislab/reproducability_AutoGeneS 0 3 0 0
theislab/reproducibility_AutoGeneS 0 3 0 0
theislab/scanpy.org 0 7 1 0
theislab/scanpy_neighbors 0 3 0 1
theislab/scarches_notebooks 0 3 0 0
theislab/sc_ketamine_analysis 0 4 0 0
theislab/sfaira-portal 0 4 2 0
theislab/sfaira-site 0 4 0 0
theislab/sfaira_benchmarks 0 3 0 0
theislab/sfaira_extension 0 3 1 0
theislab/spapros-smk 0 2 0 1
theislab/spapros_reproducibility 0 1 1 0
theislab/tissue 0 2