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environment.yml
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environment.yml
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name: mvvae
channels:
- defaults
- conda-forge
- bioconda
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2023.12.12=h06a4308_0
- ld_impl_linux-64=2.38=h1181459_1
- libffi=3.4.4=h6a678d5_0
- libgcc-ng=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libstdcxx-ng=11.2.0=h1234567_1
- libuuid=1.41.5=h5eee18b_0
- ncurses=6.4=h6a678d5_0
- openssl=3.0.13=h7f8727e_0
- pip=23.3.1=py310h06a4308_0
- python=3.10.13=h955ad1f_0
- readline=8.2=h5eee18b_0
- setuptools=68.2.2=py310h06a4308_0
- sqlite=3.41.2=h5eee18b_0
- tk=8.6.12=h1ccaba5_0
- wheel=0.41.2=py310h06a4308_0
- xz=5.4.5=h5eee18b_0
- zlib=1.2.13=h5eee18b_0
- pip:
- aiohttp==3.9.3
- aiosignal==1.3.1
- antlr4-python3-runtime==4.9.3
- appdirs==1.4.4
- async-timeout==4.0.3
- attrs==23.2.0
- certifi==2024.2.2
- charset-normalizer==3.3.2
- click==8.1.7
- docker-pycreds==0.4.0
- filelock==3.13.1
- frozenlist==1.4.1
- fsspec==2024.2.0
- gitdb==4.0.11
- gitpython==3.1.41
- hydra-core==1.3.2
- idna==3.6
- jinja2==3.1.3
- joblib==1.3.2
- lightning-utilities==0.10.1
- markupsafe==2.1.5
- mpmath==1.3.0
- multidict==6.0.5
- networkx==3.2.1
- nltk==3.8.1
- numpy==1.26.4
- nvidia-cublas-cu12==12.1.3.1
- nvidia-cuda-cupti-cu12==12.1.105
- nvidia-cuda-nvrtc-cu12==12.1.105
- nvidia-cuda-runtime-cu12==12.1.105
- nvidia-cudnn-cu12==8.9.2.26
- nvidia-cufft-cu12==11.0.2.54
- nvidia-curand-cu12==10.3.2.106
- nvidia-cusolver-cu12==11.4.5.107
- nvidia-cusparse-cu12==12.1.0.106
- nvidia-nccl-cu12==2.19.3
- nvidia-nvjitlink-cu12==12.3.101
- nvidia-nvtx-cu12==12.1.105
- omegaconf==2.3.0
- packaging==23.2
- pandas==2.2.0
- pillow==10.2.0
- protobuf==4.25.2
- psutil==5.9.8
- python-dateutil==2.8.2
- pytorch-lightning==2.1.4
- pytz==2024.1
- pyyaml==6.0.1
- regex==2023.12.25
- requests==2.31.0
- scikit-learn==1.4.0
- scipy==1.12.0
- sentry-sdk==1.40.0
- setproctitle==1.3.3
- six==1.16.0
- smmap==5.0.1
- sympy==1.12
- threadpoolctl==3.2.0
- torch==2.2.0
- torchaudio==2.2.0
- torchmetrics==1.3.0.post0
- torchvision==0.17.0
- tqdm==4.66.1
- triton==2.2.0
- typing-extensions==4.9.0
- tzdata==2023.4
- urllib3==2.2.0
- wandb==0.16.2
- yarl==1.9.4
prefix: /usr/scratch/miniconda3/envs/mvvae