-
Notifications
You must be signed in to change notification settings - Fork 275
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
CRAN clang-san error from purrr during package submission pre-check #1157
Open
jayhesselberth opened this issue
Jan 9, 2025
· 1 comment
· Fixed by jayhesselberth/purrr#1 · May be fixed by #1159
Open
CRAN clang-san error from purrr during package submission pre-check #1157
jayhesselberth opened this issue
Jan 9, 2025
· 1 comment
· Fixed by jayhesselberth/purrr#1 · May be fixed by #1159
Comments
jayhesselberth
changed the title
CRAN clang-san error from purrr
CRAN clang-san error from purrr during package submission pre-check
Jan 9, 2025
A suggested fix is provided on the r-pkg-devel mailing list: https://stat.ethz.ch/pipermail/r-package-devel/2025q1/011353.html . This warning was also previously noted during another package submission: https://stat.ethz.ch/pipermail/r-package-devel/2024q4/011230.html |
This was referenced Jan 10, 2025
jayhesselberth
added a commit
to jayhesselberth/purrr
that referenced
this issue
Jan 11, 2025
Fixes tidyverse#1157 I confirmed that clang-asan fails on current purrr with a similar error to what we're seeing in valr. This is in purrr-Ex.Rout from [this rhub check](https://github.com/jayhesselberth/purrr/actions/runs/12720310041/job/35461775454). ``` cleancall.c:110:46: runtime error: call to function cb_progress_done through pointer to incorrect function type 'void (*)(void *)' /__w/purrr/purrr/check/purrr.Rcheck/00_pkg_src/purrr/src/map.c:15: note: cb_progress_done defined here #0 0x7fd287f0d48b in call_exits /__w/purrr/purrr/check/purrr.Rcheck/00_pkg_src/purrr/src/cleancall.c:110:46 #1 0x7fd28ddf1131 in R_ExecWithCleanup /tmp/R-devel/src/main/context.c:913:5 #2 0x7fd287f0cdf2 in r_with_cleanup_context /__w/purrr/purrr/check/purrr.Rcheck/00_pkg_src/purrr/src/cleancall.c:133:14 ``` This simple patch proposed on the R-devel mailing list fixes that clang-asan error ([clang asan run](https://github.com/jayhesselberth/purrr/actions/runs/12718786947/job/35457848128)).
jayhesselberth
added a commit
to rnabioco/purrr
that referenced
this issue
Jan 11, 2025
I confirmed that clang-asan fails on current purrr with a similar error to what we're seeing in valr. This is in purrr-Ex.Rout from [this rhub check](https://github.com/jayhesselberth/purrr/actions/runs/12720310041/job/35461775454). ``` cleancall.c:110:46: runtime error: call to function cb_progress_done through pointer to incorrect function type 'void (*)(void *)' /__w/purrr/purrr/check/purrr.Rcheck/00_pkg_src/purrr/src/map.c:15: note: cb_progress_done defined here #0 0x7fd287f0d48b in call_exits /__w/purrr/purrr/check/purrr.Rcheck/00_pkg_src/purrr/src/cleancall.c:110:46 tidyverse#1 0x7fd28ddf1131 in R_ExecWithCleanup /tmp/R-devel/src/main/context.c:913:5 tidyverse#2 0x7fd287f0cdf2 in r_with_cleanup_context /__w/purrr/purrr/check/purrr.Rcheck/00_pkg_src/purrr/src/cleancall.c:133:14 ``` This simple patch proposed on the R-devel mailing list fixes that clang-asan error ([clang asan run](https://github.com/jayhesselberth/purrr/actions/runs/12718786947/job/35457848128)). Also updated the rhub action because it was useful to debug this issue.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
We are updating a package on CRAN and this error is thrown during the pre-check, from
cleancall.c
in purrr:rnabioco/valr#423 (comment)
CRAN wants us to fix. We don't import purrr directly but it's an eventual dependency (haven't tracked the specific culprit though).
Created on 2025-01-09 with reprex v2.1.1
This error doesn't appear to have come up before in the purrr issues. Any ideas for a fix?
The text was updated successfully, but these errors were encountered: