Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Allow naming of either upper or lower case Normal/Tumor sample types #46

Open
tjbencomo opened this issue Mar 7, 2020 · 0 comments
Open

Allow naming of either upper or lower case Normal/Tumor sample types #46

tjbencomo opened this issue Mar 7, 2020 · 0 comments

Comments

@tjbencomo
Copy link
Owner

Right now the pipeline requires sample type be specified as normal or tumor - the upper case versions cause an error. Call tolower() on the units data frame in common.smk to prevent this from mattering
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@tjbencomo