azure-pipelines.yml

pool:
  vmImage: 'Ubuntu 16.04'

steps:
- bash: |
    sudo service mysql stop
    sudo apt-get update
    sudo apt-get remove --purge mysql-client mysql-server mysql-common -y
    sudo apt-get purge mysql-client mysql-server mysql-common -y
    sudo apt-get autoremove -y
    sudo apt-get autoclean -y
    sudo rm -rf /var/lib/mysql/

    wget -nv https://apt.puppetlabs.com/puppet5-release-xenial.deb
    sudo dpkg -i puppet5-release-xenial.deb
    sudo apt-get install -qq -f
    sudo apt-get update
    sudo rm -f puppet5-release-xenial.deb

    sudo apt-get install puppet-agent -y

    sudo apt-get clean all
    sudo apt-get update
    sudo apt-get autoremove -y
    sudo apt-get clean all

    sudo /opt/puppetlabs/puppet/bin/gem install r10k

    echo -n "Puppet version: "
    /opt/puppetlabs/bin/puppet --version
    /opt/puppetlabs/puppet/bin/r10k version

    git clone -b ubuntu16 https://github.com/datashield/datashield-infrastructure.git ../datashield-infrastructure
    pushd ../datashield-infrastructure/puppet/environments/datashield_azurepipelines && sudo /opt/puppetlabs/puppet/bin/r10k puppetfile install && popd
    sudo /opt/puppetlabs/bin/puppet apply azure-pipelines_site.pp --environment datashield_azurepipelines --environmentpath ../datashield-infrastructure/puppet/environments
  displayName: 'Install DataSHIELD server'

- bash: |
    sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
    sudo add-apt-repository 'deb [arch=amd64,i386] https://cran.rstudio.com/bin/linux/ubuntu xenial/'
    sudo apt-get update
    sudo apt-get install -qq libxml2-dev libcurl4-openssl-dev libssl-dev -y
    sudo apt-get install -qq r-base -y
    sudo R -e "install.packages('devtools', dependencies=TRUE)"
    sudo R -e "library('devtools'); library('opal'); library('opaladmin'); opals <- opal.login(username='administrator', password='password', url='http://127.0.0.1:8080'); opaladmin::dsadmin.install_package(opal=opals,pkg='dsBetaTest',githubusername='datashield',ref='master'); datashield.logout(opals)"
  displayName: 'Install R client'

- bash: |
    R -e "library('devtools'); devtools::check(args = c('--no-examples'))" | tee azure-pipelines_check.Rout
    grep --quiet "0 error" azure-pipelines_check.Rout
  displayName: 'Devtools checks'
  condition: always()

- bash: |
    R -e "library('devtools'); devtools::test()" | tee azure-pipelines_test.Rout
    grep --quiet "Failed:   0" azure-pipelines_test.Rout
  displayName: 'Devtools tests'
  condition: always()

- bash: |
    ./checkDocumentationUpdated.sh
  displayName: 'Check documents'
  condition: always()