Biostrings port in Java (for study)
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Updated
Jan 6, 2018 - Java
Biostrings port in Java (for study)
🧪 Naming non-cyclical alkanes using the official IUPAC nomenclature
Different prototypes for detecting chemical graph presentation of the molecules into computer-readable format from image, IUPAC name
A simple HTML page with Javascript to determine all possible sequences represented by IUPAC nucleotide codes
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JCAMP-DX file converter for iOS
A collection of bioinformatics and data mining scripts
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
This Python program serves to extract definitions from the IUPAC key-value store by searching through a JSON file based on user-defined terms. Utilizing Pandas, it generates a table and exports the retrieved definitions into a downloadable CSV format. This tool facilitates easy access to IUPAC scientific terminology.
Collapse a set of redundant kmers to use IUPAC degenerate bases
IUPAC-based large-scale molecular pre-trained model for property prediction and molecular generation
Conversion between IUPAC names and SMILES chemical structures using context free grammars.
Diffusion-based generative drug-like molecular editing with chemical natural language
Algorithms for Bionformatics - Python Module to handle biological sequences and run common algorithms and techniques
Encoder-decoders for translating different chemical formats.
pattern matching with error for small pattern size (<= 64) for DNA and IUPAC
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