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Sample masking from sgkit dataset #895

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benjeffery opened this issue Jan 26, 2024 · 1 comment
Open

Sample masking from sgkit dataset #895

benjeffery opened this issue Jan 26, 2024 · 1 comment

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@benjeffery
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To restrict inference to a subset of samples a subset-copy of the sgkit dataset needs to be performed. For large datasets this is less than ideal.
If tsinfer read a sample_mask array from the dataset, inference could be restricted to those samples in the mask. If done at the SgkitSampleDataset level this should be possible without wider changes to tsinfer.

@benjeffery
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Note that "sample" in this context is the sgkit sample, which is "individual" in tsinfer.

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