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can i use a trajectory and align it to the same protein structure saved in another pdb file? #37

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hima111997 opened this issue Jul 24, 2023 · 0 comments

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@hima111997
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assuming that i have 3 xtc files with N frames and i want to align all of them to the same protein structure. however this structure is saved in another pdb file. can i do this?
will it work if i added this structure to one of the xtc files as the first frame then used:

ttclust -f xtc1_with ref xtc2 xtc3 -t top

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