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BeakerX not support miniforge? install failed via conda. #8327

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plmcoder opened this issue Mar 17, 2024 · 0 comments
Open

BeakerX not support miniforge? install failed via conda. #8327

plmcoder opened this issue Mar 17, 2024 · 0 comments

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@plmcoder
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Hi,
follow the instructions of official site: http://beakerx.com/documentation
and could not install the beakerx, beakerx_all
it seems the version is too old.
but when I search it in https://pypi.org/, the latest version is 2.4.1!!!
how can I get it works on miniforge (conda-forge channel), do you still support conda? or is this project still alive?

this project is very useful to me because I'm do research on Quarto and try to add java/groovy feature based on beakerx.
Thanks in advance!

(base) d:\0-Apps\quarto>conda install -c conda-forge beakerx
Channels:
 - conda-forge
Platform: win-64
Collecting package metadata (repodata.json): done
Solving environment: done

## Package Plan ##

  environment location: C:\miniforge3

  added / updated specs:
    - beakerx


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    pytest-8.1.1               |     pyhd8ed1ab_0         250 KB  conda-forge
    ------------------------------------------------------------
                                           Total:         250 KB

The following NEW packages will be INSTALLED:

  beakerx            conda-forge/win-64::beakerx-1.4.1-py310h5588dad_8
  iniconfig          conda-forge/noarch::iniconfig-2.0.0-pyhd8ed1ab_0
  intel-openmp       conda-forge/win-64::intel-openmp-2024.0.0-h57928b3_49841
  libblas            conda-forge/win-64::libblas-3.9.0-21_win64_mkl
  libcblas           conda-forge/win-64::libcblas-3.9.0-21_win64_mkl
  libhwloc           conda-forge/win-64::libhwloc-2.9.3-default_haede6df_1009
  liblapack          conda-forge/win-64::liblapack-3.9.0-21_win64_mkl
  maven              conda-forge/win-64::maven-3.9.6-h57928b3_0
  mkl                conda-forge/win-64::mkl-2024.0.0-h66d3029_49657
  numpy              conda-forge/win-64::numpy-1.26.4-py310hf667824_0
  openjdk            conda-forge/win-64::openjdk-8.0.121-zulu8.20.0.5_0
  pandas             conda-forge/win-64::pandas-2.2.1-py310hecd3228_0
  pthreads-win32     conda-forge/win-64::pthreads-win32-2.9.1-hfa6e2cd_3
  py4j               conda-forge/noarch::py4j-0.10.9.7-pyhd8ed1ab_0
  pytest             conda-forge/noarch::pytest-8.1.1-pyhd8ed1ab_0
  python-tzdata      conda-forge/noarch::python-tzdata-2024.1-pyhd8ed1ab_0
  tbb                conda-forge/win-64::tbb-2021.11.0-h91493d7_1


Proceed ([y]/n)? y


Downloading and Extracting Packages:

Preparing transaction: done
Verifying transaction: done
Executing transaction: / Traceback (most recent call last):
  File "C:\miniforge3\Scripts\beakerx-script.py", line 6, in <module>
    from beakerx import run
  File "C:\miniforge3\lib\site-packages\beakerx\__init__.py", line 20, in <module>
    from .handlers import load_jupyter_server_extension
  File "C:\miniforge3\lib\site-packages\beakerx\handlers.py", line 20, in <module>
    from notebook.base.handlers import APIHandler, IPythonHandler
ModuleNotFoundError: No module named 'notebook.base'

done
ERROR conda.core.link:_execute(945): An error occurred while installing package 'conda-forge::beakerx-1.4.1-py310h5588dad_8'.
Rolling back transaction: done

LinkError: post-link script failed for package conda-forge::beakerx-1.4.1-py310h5588dad_8
location of failed script: C:\miniforge3\Scripts\.beakerx-post-link.bat
==> script messages <==
Traceback (most recent call last):
  File "C:\miniforge3\Scripts\beakerx-script.py", line 6, in <module>
    from beakerx import run
  File "C:\miniforge3\lib\site-packages\beakerx\__init__.py", line 20, in <module>
    from .handlers import load_jupyter_server_extension
  File "C:\miniforge3\lib\site-packages\beakerx\handlers.py", line 20, in <module>
    from notebook.base.handlers import APIHandler, IPythonHandler
ModuleNotFoundError: No module named 'notebook.base'

==> script output <==
stdout:
stderr:
return code: 1

()
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